Wall clock time and date at job start Mon Mar 30 2020 05:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46898 * 110.99452 * 2 1 4 4 C 1.46898 * 111.00157 * 123.95205 * 2 1 3 5 5 C 1.53006 * 109.47006 * 60.00147 * 4 2 1 6 6 C 1.52997 * 109.47127 * 179.97438 * 5 4 2 7 7 C 1.53000 * 109.47060 * 300.00449 * 6 5 4 8 8 N 1.46905 * 109.47123 * 299.99706 * 7 6 5 9 9 C 1.46901 * 111.00187 * 205.00495 * 8 7 6 10 10 C 1.52993 * 109.47164 * 180.02562 * 9 8 7 11 11 O 1.42903 * 109.47047 * 64.99606 * 10 9 8 12 12 C 1.42905 * 113.99769 * 179.97438 * 11 10 9 13 13 C 1.50693 * 109.47023 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00517 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00017 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00231 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00307 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47119 * 89.99817 * 17 15 13 19 19 H 1.48496 * 109.47383 * 210.00507 * 17 15 13 20 20 H 1.48504 * 109.46733 * 330.00010 * 17 15 13 21 21 C 1.52996 * 109.47328 * 60.00126 * 7 6 5 22 22 C 1.52997 * 109.47123 * 180.02562 * 4 2 1 23 23 H 1.09002 * 109.47549 * 296.04409 * 1 2 3 24 24 H 1.08994 * 109.47328 * 56.04605 * 1 2 3 25 25 H 1.09005 * 109.46967 * 176.04710 * 1 2 3 26 26 H 1.09007 * 109.46909 * 183.95377 * 3 2 1 27 27 H 1.08997 * 109.47651 * 303.95516 * 3 2 1 28 28 H 1.09002 * 109.47061 * 63.95566 * 3 2 1 29 29 H 1.09001 * 109.47062 * 300.00401 * 4 2 1 30 30 H 1.08998 * 109.46505 * 59.99663 * 5 4 2 31 31 H 1.08996 * 109.46884 * 300.00544 * 5 4 2 32 32 H 1.09002 * 109.47153 * 180.02562 * 6 5 4 33 33 H 1.09001 * 109.46832 * 60.00321 * 6 5 4 34 34 H 1.09004 * 109.46724 * 180.02562 * 7 6 5 35 35 H 1.00897 * 110.99456 * 81.04589 * 8 7 6 36 36 H 1.09005 * 109.46355 * 300.00136 * 9 8 7 37 37 H 1.09007 * 109.47046 * 59.99613 * 9 8 7 38 38 H 1.08999 * 109.47150 * 184.99600 * 10 9 8 39 39 H 1.09000 * 109.46992 * 304.99830 * 10 9 8 40 40 H 1.08997 * 109.47318 * 300.00760 * 12 11 10 41 41 H 1.09001 * 109.46609 * 60.00408 * 12 11 10 42 42 H 0.96998 * 120.00084 * 179.97438 * 16 15 13 43 43 H 1.08992 * 109.47554 * 59.99639 * 21 7 6 44 44 H 1.09004 * 109.47108 * 179.97438 * 21 7 6 45 45 H 1.09002 * 109.47045 * 60.00157 * 22 4 2 46 46 H 1.09001 * 109.47375 * 300.00082 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 1.5049 -2.2125 1.0492 6 6 2.0538 -3.0104 2.2337 7 6 3.5832 -2.9874 2.1992 8 7 4.0538 -3.5882 0.9439 9 6 5.4131 -4.1248 1.0942 10 6 5.8678 -4.7401 -0.2307 11 8 5.9732 -3.7150 -1.2207 12 6 6.3941 -4.1860 -2.5025 13 6 6.4711 -3.0274 -3.4630 14 1 6.2238 -2.0308 -3.1280 15 6 6.8573 -3.2394 -4.7695 16 7 7.1580 -4.4529 -5.1776 17 14 6.9521 -1.8033 -5.9603 18 1 8.3134 -1.2118 -5.9150 19 1 6.6656 -2.2817 -7.3366 20 1 5.9524 -0.7747 -5.5757 21 6 4.0737 -1.5409 2.2877 22 6 3.5249 -0.7426 1.1040 23 1 -0.3634 0.4512 0.9233 24 1 -0.3633 0.5739 -0.8524 25 1 -0.3633 -1.0253 -0.0708 26 1 3.0827 1.3433 -0.0709 27 1 1.5897 1.9164 -0.8524 28 1 1.7042 1.8723 0.9233 29 1 1.6459 -0.3200 2.0688 30 1 1.8544 -2.6583 0.1180 31 1 0.4154 -2.2287 1.0732 32 1 1.7047 -4.0411 2.1704 33 1 1.7046 -2.5646 3.1650 34 1 3.9742 -3.5563 3.0428 35 1 4.0090 -2.9237 0.1860 36 1 6.0928 -3.3194 1.3726 37 1 5.4180 -4.8894 1.8711 38 1 6.8390 -5.2162 -0.0958 39 1 5.1401 -5.4843 -0.5544 40 1 7.3763 -4.6504 -2.4145 41 1 5.6776 -4.9189 -2.8735 42 1 7.4294 -4.6021 -6.0969 43 1 3.7245 -1.0951 3.2189 44 1 5.1634 -1.5246 2.2636 45 1 3.8740 0.2881 1.1673 46 1 3.8748 -1.1882 0.1729 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715500230.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:55 Heat of formation + Delta-G solvation = -76.786554 kcal Electronic energy + Delta-G solvation = -21900.553521 eV Core-core repulsion = 18823.615831 eV Total energy + Delta-G solvation = -3076.937689 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.71203 -38.77545 -37.57645 -35.09544 -34.24892 -31.92516 -30.84735 -29.31584 -28.40765 -27.80865 -24.84009 -24.52027 -23.37354 -22.75282 -21.71156 -19.91258 -18.65056 -17.55707 -17.35794 -16.82780 -16.61168 -16.36311 -15.76049 -15.70591 -15.33634 -15.16687 -14.78867 -14.53874 -14.25850 -13.86087 -13.51842 -13.42272 -13.27872 -13.23997 -12.92750 -12.82849 -12.69739 -12.49802 -12.36721 -12.34943 -12.21717 -11.97379 -11.81264 -11.46899 -11.27692 -11.10271 -10.95231 -10.85975 -10.22011 -9.22548 -9.20300 -8.31693 -6.43767 1.39152 1.42192 1.54368 2.34823 2.99453 3.02136 3.23267 3.32839 3.76136 3.84463 4.02323 4.22927 4.27175 4.28620 4.37156 4.39459 4.45202 4.53192 4.53723 4.56873 4.61943 4.68055 4.71047 4.73268 4.80836 4.88858 4.92565 4.96694 4.99654 5.03305 5.12428 5.15309 5.19249 5.29387 5.32399 5.43276 5.54780 5.55696 5.96448 6.16876 6.20369 6.26594 6.50413 6.54561 6.82696 7.28031 8.80764 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.014852 B = 0.004995 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.831132 B = 5603.772866 C = 6936.608907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.568 5.568 3 C 0.023 3.977 4 C 0.095 3.905 5 C -0.110 4.110 6 C -0.097 4.097 7 C 0.084 3.916 8 N -0.691 5.691 9 C 0.075 3.925 10 C 0.053 3.947 11 O -0.408 6.408 12 C 0.212 3.788 13 C -0.545 4.545 14 H 0.060 0.940 15 C 0.007 3.993 16 N -0.931 5.931 17 Si 0.981 3.019 18 H -0.267 1.267 19 H -0.274 1.274 20 H -0.266 1.266 21 C -0.140 4.140 22 C -0.116 4.116 23 H 0.032 0.968 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.033 0.967 29 H 0.047 0.953 30 H 0.050 0.950 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.343 0.657 36 H 0.031 0.969 37 H 0.105 0.895 38 H 0.047 0.953 39 H 0.041 0.959 40 H -0.015 1.015 41 H -0.017 1.017 42 H 0.271 0.729 43 H 0.084 0.916 44 H 0.054 0.946 45 H 0.065 0.935 46 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.744 7.548 17.413 22.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.292 5.292 3 C -0.125 4.125 4 C -0.013 4.013 5 C -0.148 4.148 6 C -0.135 4.135 7 C -0.026 4.026 8 N -0.325 5.325 9 C -0.055 4.055 10 C -0.024 4.024 11 O -0.328 6.328 12 C 0.137 3.863 13 C -0.583 4.583 14 H 0.078 0.922 15 C -0.191 4.191 16 N -0.570 5.570 17 Si 0.804 3.196 18 H -0.192 1.192 19 H -0.198 1.198 20 H -0.190 1.190 21 C -0.180 4.180 22 C -0.154 4.154 23 H 0.051 0.949 24 H 0.088 0.912 25 H 0.090 0.910 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.099 0.901 34 H 0.107 0.893 35 H 0.164 0.836 36 H 0.049 0.951 37 H 0.123 0.877 38 H 0.065 0.935 39 H 0.059 0.941 40 H 0.002 0.998 41 H 0.001 0.999 42 H 0.079 0.921 43 H 0.103 0.897 44 H 0.073 0.927 45 H 0.084 0.916 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -11.881 6.799 16.976 21.807 hybrid contribution 0.690 1.183 -0.361 1.416 sum -11.191 7.982 16.615 21.564 Atomic orbital electron populations 1.22425 0.86520 1.02627 1.00784 1.61950 1.08842 1.14327 1.44114 1.22415 1.00854 0.88427 1.00804 1.21596 0.94231 0.94351 0.91091 1.21541 1.00245 0.93622 0.99362 1.21470 0.93610 1.00453 0.97957 1.21677 0.96082 0.92778 0.92040 1.60724 1.22877 1.41714 1.07176 1.21939 0.89516 0.99171 0.94824 1.22629 0.98962 0.91252 0.89578 1.87763 1.88990 1.35058 1.20991 1.19773 0.91787 0.94785 0.79935 1.21354 1.46813 0.94746 0.95367 0.92180 1.25937 0.94052 0.99434 0.99690 1.70071 1.46040 1.22517 1.18367 0.85217 0.79068 0.78162 0.77188 1.19174 1.19846 1.18995 1.22104 1.00144 0.96876 0.98854 1.21596 0.94973 1.00245 0.98549 0.94927 0.91153 0.91027 0.91832 0.91083 0.94850 0.93500 0.93089 0.91240 0.91284 0.90067 0.89295 0.83567 0.95103 0.87727 0.93510 0.94101 0.99752 0.99923 0.92061 0.89696 0.92699 0.91630 0.93686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 9.21 127.69 1.18 1.64 16 2 N -0.57 -13.70 4.89 -923.26 -4.51 -18.22 16 3 C 0.02 0.49 9.11 127.69 1.16 1.65 16 4 C 0.10 2.14 1.95 44.92 0.09 2.23 16 5 C -0.11 -2.49 4.73 30.60 0.14 -2.35 16 6 C -0.10 -1.88 5.64 30.59 0.17 -1.71 16 7 C 0.08 1.85 2.86 44.91 0.13 1.97 16 8 N -0.69 -20.51 5.77 -491.55 -2.83 -23.34 16 9 C 0.07 2.23 5.90 86.30 0.51 2.74 16 10 C 0.05 2.05 6.28 71.98 0.45 2.50 16 11 O -0.41 -20.47 9.85 -148.98 -1.47 -21.93 16 12 C 0.21 12.33 5.69 71.23 0.41 12.74 16 13 C -0.55 -33.32 9.43 25.60 0.24 -33.08 16 14 H 0.06 3.64 7.81 -2.91 -0.02 3.62 16 15 C 0.01 0.43 5.46 84.65 0.46 0.89 16 16 N -0.93 -57.09 13.29 21.45 0.28 -56.81 16 17 Si 0.98 45.39 29.54 68.60 2.03 47.42 16 18 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 19 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 20 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 21 C -0.14 -3.00 5.52 30.58 0.17 -2.83 16 22 C -0.12 -2.89 4.59 30.58 0.14 -2.75 16 23 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 24 H 0.07 1.27 8.12 -2.39 -0.02 1.25 16 25 H 0.07 1.37 6.30 -2.38 -0.02 1.36 16 26 H 0.06 1.46 6.24 -2.38 -0.01 1.44 16 27 H 0.07 1.41 8.12 -2.39 -0.02 1.39 16 28 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.05 1.51 7.21 -2.39 -0.02 1.49 16 31 H 0.07 1.40 6.40 -2.39 -0.02 1.38 16 32 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.09 1.70 7.80 -2.39 -0.02 1.68 16 35 H 0.34 12.19 5.12 -89.70 -0.46 11.73 16 36 H 0.03 0.93 7.44 -2.38 -0.02 0.92 16 37 H 0.10 2.48 8.06 -2.38 -0.02 2.46 16 38 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 40 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 41 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 42 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 43 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.05 1.28 7.45 -2.38 -0.02 1.27 16 45 H 0.07 1.56 6.35 -2.39 -0.02 1.55 16 46 H 0.04 1.47 6.26 -2.39 -0.01 1.45 16 Total: -1.00 -67.26 349.39 -0.78 -68.04 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: 0.47 Total: 21.19 kcal Atomic # 6 Polarization: -21.60 SS G_CDS: 5.25 Total: -16.35 kcal Atomic # 7 Polarization: -91.31 SS G_CDS: -7.06 Total: -98.37 kcal Atomic # 8 Polarization: -20.47 SS G_CDS: -1.47 Total: -21.93 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -67.26 -0.78 -68.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715500230.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.749 kcal (2) G-P(sol) polarization free energy of solvation -67.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds