Wall clock time and date at job start Mon Mar 30 2020 05:00:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46902 * 1
3 3 C 1.46898 * 110.99452 * 2 1
4 4 C 1.46898 * 111.00157 * 123.95205 * 2 1 3
5 5 C 1.53006 * 109.47006 * 60.00147 * 4 2 1
6 6 C 1.52997 * 109.47127 * 179.97438 * 5 4 2
7 7 C 1.53000 * 109.47060 * 300.00449 * 6 5 4
8 8 N 1.46905 * 109.47123 * 299.99706 * 7 6 5
9 9 C 1.46901 * 111.00187 * 205.00495 * 8 7 6
10 10 C 1.52993 * 109.47164 * 180.02562 * 9 8 7
11 11 O 1.42903 * 109.47047 * 64.99606 * 10 9 8
12 12 C 1.42905 * 113.99769 * 179.97438 * 11 10 9
13 13 C 1.50693 * 109.47023 * 180.02562 * 12 11 10
14 14 H 1.08002 * 120.00517 * 0.02562 * 13 12 11
15 15 C 1.37877 * 120.00017 * 180.02562 * 13 12 11
16 16 N 1.31515 * 120.00231 * 0.02562 * 15 13 12
17 17 Si 1.86801 * 120.00307 * 179.97438 * 15 13 12
18 18 H 1.48495 * 109.47119 * 89.99817 * 17 15 13
19 19 H 1.48496 * 109.47383 * 210.00507 * 17 15 13
20 20 H 1.48504 * 109.46733 * 330.00010 * 17 15 13
21 21 C 1.52996 * 109.47328 * 60.00126 * 7 6 5
22 22 C 1.52997 * 109.47123 * 180.02562 * 4 2 1
23 23 H 1.09002 * 109.47549 * 296.04409 * 1 2 3
24 24 H 1.08994 * 109.47328 * 56.04605 * 1 2 3
25 25 H 1.09005 * 109.46967 * 176.04710 * 1 2 3
26 26 H 1.09007 * 109.46909 * 183.95377 * 3 2 1
27 27 H 1.08997 * 109.47651 * 303.95516 * 3 2 1
28 28 H 1.09002 * 109.47061 * 63.95566 * 3 2 1
29 29 H 1.09001 * 109.47062 * 300.00401 * 4 2 1
30 30 H 1.08998 * 109.46505 * 59.99663 * 5 4 2
31 31 H 1.08996 * 109.46884 * 300.00544 * 5 4 2
32 32 H 1.09002 * 109.47153 * 180.02562 * 6 5 4
33 33 H 1.09001 * 109.46832 * 60.00321 * 6 5 4
34 34 H 1.09004 * 109.46724 * 180.02562 * 7 6 5
35 35 H 1.00897 * 110.99456 * 81.04589 * 8 7 6
36 36 H 1.09005 * 109.46355 * 300.00136 * 9 8 7
37 37 H 1.09007 * 109.47046 * 59.99613 * 9 8 7
38 38 H 1.08999 * 109.47150 * 184.99600 * 10 9 8
39 39 H 1.09000 * 109.46992 * 304.99830 * 10 9 8
40 40 H 1.08997 * 109.47318 * 300.00760 * 12 11 10
41 41 H 1.09001 * 109.46609 * 60.00408 * 12 11 10
42 42 H 0.96998 * 120.00084 * 179.97438 * 16 15 13
43 43 H 1.08992 * 109.47554 * 59.99639 * 21 7 6
44 44 H 1.09004 * 109.47108 * 179.97438 * 21 7 6
45 45 H 1.09002 * 109.47045 * 60.00157 * 22 4 2
46 46 H 1.09001 * 109.47375 * 300.00082 * 22 4 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9953 1.3715 0.0000
4 6 1.9955 -0.7659 1.1376
5 6 1.5049 -2.2125 1.0492
6 6 2.0538 -3.0104 2.2337
7 6 3.5832 -2.9874 2.1992
8 7 4.0538 -3.5882 0.9439
9 6 5.4131 -4.1248 1.0942
10 6 5.8678 -4.7401 -0.2307
11 8 5.9732 -3.7150 -1.2207
12 6 6.3941 -4.1860 -2.5025
13 6 6.4711 -3.0274 -3.4630
14 1 6.2238 -2.0308 -3.1280
15 6 6.8573 -3.2394 -4.7695
16 7 7.1580 -4.4529 -5.1776
17 14 6.9521 -1.8033 -5.9603
18 1 8.3134 -1.2118 -5.9150
19 1 6.6656 -2.2817 -7.3366
20 1 5.9524 -0.7747 -5.5757
21 6 4.0737 -1.5409 2.2877
22 6 3.5249 -0.7426 1.1040
23 1 -0.3634 0.4512 0.9233
24 1 -0.3633 0.5739 -0.8524
25 1 -0.3633 -1.0253 -0.0708
26 1 3.0827 1.3433 -0.0709
27 1 1.5897 1.9164 -0.8524
28 1 1.7042 1.8723 0.9233
29 1 1.6459 -0.3200 2.0688
30 1 1.8544 -2.6583 0.1180
31 1 0.4154 -2.2287 1.0732
32 1 1.7047 -4.0411 2.1704
33 1 1.7046 -2.5646 3.1650
34 1 3.9742 -3.5563 3.0428
35 1 4.0090 -2.9237 0.1860
36 1 6.0928 -3.3194 1.3726
37 1 5.4180 -4.8894 1.8711
38 1 6.8390 -5.2162 -0.0958
39 1 5.1401 -5.4843 -0.5544
40 1 7.3763 -4.6504 -2.4145
41 1 5.6776 -4.9189 -2.8735
42 1 7.4294 -4.6021 -6.0969
43 1 3.7245 -1.0951 3.2189
44 1 5.1634 -1.5246 2.2636
45 1 3.8740 0.2881 1.1673
46 1 3.8748 -1.1882 0.1729
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000715500230.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:00:55
Heat of formation + Delta-G solvation = -76.786554 kcal
Electronic energy + Delta-G solvation = -21900.553521 eV
Core-core repulsion = 18823.615831 eV
Total energy + Delta-G solvation = -3076.937689 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 270.205 amu
Computer time = 0.52 seconds
Orbital eigenvalues (eV)
-40.71203 -38.77545 -37.57645 -35.09544 -34.24892 -31.92516 -30.84735 -29.31584
-28.40765 -27.80865 -24.84009 -24.52027 -23.37354 -22.75282 -21.71156 -19.91258
-18.65056 -17.55707 -17.35794 -16.82780 -16.61168 -16.36311 -15.76049 -15.70591
-15.33634 -15.16687 -14.78867 -14.53874 -14.25850 -13.86087 -13.51842 -13.42272
-13.27872 -13.23997 -12.92750 -12.82849 -12.69739 -12.49802 -12.36721 -12.34943
-12.21717 -11.97379 -11.81264 -11.46899 -11.27692 -11.10271 -10.95231 -10.85975
-10.22011 -9.22548 -9.20300 -8.31693 -6.43767 1.39152 1.42192 1.54368
2.34823 2.99453 3.02136 3.23267 3.32839 3.76136 3.84463 4.02323
4.22927 4.27175 4.28620 4.37156 4.39459 4.45202 4.53192 4.53723
4.56873 4.61943 4.68055 4.71047 4.73268 4.80836 4.88858 4.92565
4.96694 4.99654 5.03305 5.12428 5.15309 5.19249 5.29387 5.32399
5.43276 5.54780 5.55696 5.96448 6.16876 6.20369 6.26594 6.50413
6.54561 6.82696 7.28031 8.80764
Molecular weight = 270.20amu
Principal moments of inertia in cm(-1)
A = 0.014852 B = 0.004995 C = 0.004036
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1884.831132 B = 5603.772866 C = 6936.608907
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.024 3.976
2 N -0.568 5.568
3 C 0.023 3.977
4 C 0.095 3.905
5 C -0.110 4.110
6 C -0.097 4.097
7 C 0.084 3.916
8 N -0.691 5.691
9 C 0.075 3.925
10 C 0.053 3.947
11 O -0.408 6.408
12 C 0.212 3.788
13 C -0.545 4.545
14 H 0.060 0.940
15 C 0.007 3.993
16 N -0.931 5.931
17 Si 0.981 3.019
18 H -0.267 1.267
19 H -0.274 1.274
20 H -0.266 1.266
21 C -0.140 4.140
22 C -0.116 4.116
23 H 0.032 0.968
24 H 0.070 0.930
25 H 0.071 0.929
26 H 0.063 0.937
27 H 0.070 0.930
28 H 0.033 0.967
29 H 0.047 0.953
30 H 0.050 0.950
31 H 0.069 0.931
32 H 0.068 0.932
33 H 0.081 0.919
34 H 0.089 0.911
35 H 0.343 0.657
36 H 0.031 0.969
37 H 0.105 0.895
38 H 0.047 0.953
39 H 0.041 0.959
40 H -0.015 1.015
41 H -0.017 1.017
42 H 0.271 0.729
43 H 0.084 0.916
44 H 0.054 0.946
45 H 0.065 0.935
46 H 0.044 0.956
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.744 7.548 17.413 22.318
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.124 4.124
2 N -0.292 5.292
3 C -0.125 4.125
4 C -0.013 4.013
5 C -0.148 4.148
6 C -0.135 4.135
7 C -0.026 4.026
8 N -0.325 5.325
9 C -0.055 4.055
10 C -0.024 4.024
11 O -0.328 6.328
12 C 0.137 3.863
13 C -0.583 4.583
14 H 0.078 0.922
15 C -0.191 4.191
16 N -0.570 5.570
17 Si 0.804 3.196
18 H -0.192 1.192
19 H -0.198 1.198
20 H -0.190 1.190
21 C -0.180 4.180
22 C -0.154 4.154
23 H 0.051 0.949
24 H 0.088 0.912
25 H 0.090 0.910
26 H 0.082 0.918
27 H 0.089 0.911
28 H 0.052 0.948
29 H 0.065 0.935
30 H 0.069 0.931
31 H 0.088 0.912
32 H 0.087 0.913
33 H 0.099 0.901
34 H 0.107 0.893
35 H 0.164 0.836
36 H 0.049 0.951
37 H 0.123 0.877
38 H 0.065 0.935
39 H 0.059 0.941
40 H 0.002 0.998
41 H 0.001 0.999
42 H 0.079 0.921
43 H 0.103 0.897
44 H 0.073 0.927
45 H 0.084 0.916
46 H 0.063 0.937
Dipole moment (debyes) X Y Z Total
from point charges -11.881 6.799 16.976 21.807
hybrid contribution 0.690 1.183 -0.361 1.416
sum -11.191 7.982 16.615 21.564
Atomic orbital electron populations
1.22425 0.86520 1.02627 1.00784 1.61950 1.08842 1.14327 1.44114
1.22415 1.00854 0.88427 1.00804 1.21596 0.94231 0.94351 0.91091
1.21541 1.00245 0.93622 0.99362 1.21470 0.93610 1.00453 0.97957
1.21677 0.96082 0.92778 0.92040 1.60724 1.22877 1.41714 1.07176
1.21939 0.89516 0.99171 0.94824 1.22629 0.98962 0.91252 0.89578
1.87763 1.88990 1.35058 1.20991 1.19773 0.91787 0.94785 0.79935
1.21354 1.46813 0.94746 0.95367 0.92180 1.25937 0.94052 0.99434
0.99690 1.70071 1.46040 1.22517 1.18367 0.85217 0.79068 0.78162
0.77188 1.19174 1.19846 1.18995 1.22104 1.00144 0.96876 0.98854
1.21596 0.94973 1.00245 0.98549 0.94927 0.91153 0.91027 0.91832
0.91083 0.94850 0.93500 0.93089 0.91240 0.91284 0.90067 0.89295
0.83567 0.95103 0.87727 0.93510 0.94101 0.99752 0.99923 0.92061
0.89696 0.92699 0.91630 0.93686
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.47 9.21 127.69 1.18 1.64 16
2 N -0.57 -13.70 4.89 -923.26 -4.51 -18.22 16
3 C 0.02 0.49 9.11 127.69 1.16 1.65 16
4 C 0.10 2.14 1.95 44.92 0.09 2.23 16
5 C -0.11 -2.49 4.73 30.60 0.14 -2.35 16
6 C -0.10 -1.88 5.64 30.59 0.17 -1.71 16
7 C 0.08 1.85 2.86 44.91 0.13 1.97 16
8 N -0.69 -20.51 5.77 -491.55 -2.83 -23.34 16
9 C 0.07 2.23 5.90 86.30 0.51 2.74 16
10 C 0.05 2.05 6.28 71.98 0.45 2.50 16
11 O -0.41 -20.47 9.85 -148.98 -1.47 -21.93 16
12 C 0.21 12.33 5.69 71.23 0.41 12.74 16
13 C -0.55 -33.32 9.43 25.60 0.24 -33.08 16
14 H 0.06 3.64 7.81 -2.91 -0.02 3.62 16
15 C 0.01 0.43 5.46 84.65 0.46 0.89 16
16 N -0.93 -57.09 13.29 21.45 0.28 -56.81 16
17 Si 0.98 45.39 29.54 68.60 2.03 47.42 16
18 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16
19 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16
20 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16
21 C -0.14 -3.00 5.52 30.58 0.17 -2.83 16
22 C -0.12 -2.89 4.59 30.58 0.14 -2.75 16
23 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16
24 H 0.07 1.27 8.12 -2.39 -0.02 1.25 16
25 H 0.07 1.37 6.30 -2.38 -0.02 1.36 16
26 H 0.06 1.46 6.24 -2.38 -0.01 1.44 16
27 H 0.07 1.41 8.12 -2.39 -0.02 1.39 16
28 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16
29 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16
30 H 0.05 1.51 7.21 -2.39 -0.02 1.49 16
31 H 0.07 1.40 6.40 -2.39 -0.02 1.38 16
32 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16
33 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16
34 H 0.09 1.70 7.80 -2.39 -0.02 1.68 16
35 H 0.34 12.19 5.12 -89.70 -0.46 11.73 16
36 H 0.03 0.93 7.44 -2.38 -0.02 0.92 16
37 H 0.10 2.48 8.06 -2.38 -0.02 2.46 16
38 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16
39 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16
40 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16
41 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16
42 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16
43 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16
44 H 0.05 1.28 7.45 -2.38 -0.02 1.27 16
45 H 0.07 1.56 6.35 -2.39 -0.02 1.55 16
46 H 0.04 1.47 6.26 -2.39 -0.01 1.45 16
Total: -1.00 -67.26 349.39 -0.78 -68.04
By element:
Atomic # 1 Polarization: 20.72 SS G_CDS: 0.47 Total: 21.19 kcal
Atomic # 6 Polarization: -21.60 SS G_CDS: 5.25 Total: -16.35 kcal
Atomic # 7 Polarization: -91.31 SS G_CDS: -7.06 Total: -98.37 kcal
Atomic # 8 Polarization: -20.47 SS G_CDS: -1.47 Total: -21.93 kcal
Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal
Total: -67.26 -0.78 -68.04 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000715500230.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -8.749 kcal
(2) G-P(sol) polarization free energy of solvation -67.256 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.005 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.782 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.038 kcal
(6) G-S(sol) free energy of system = (1) + (5) -76.787 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.52 seconds