Wall clock time and date at job start Mon Mar 30 2020 05:13:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42889 * 1
3 3 C 1.42904 * 114.00177 * 2 1
4 4 C 1.53000 * 109.47370 * 179.97438 * 3 2 1
5 5 N 1.46895 * 109.46918 * 68.52519 * 4 3 2
6 6 C 1.46898 * 111.00213 * 284.46713 * 5 4 3
7 7 C 1.50693 * 109.47462 * 159.55184 * 6 5 4
8 8 H 1.08003 * 120.00242 * 354.64309 * 7 6 5
9 9 C 1.37882 * 119.99990 * 174.64252 * 7 6 5
10 10 N 1.31513 * 119.99849 * 180.02562 * 9 7 6
11 11 Si 1.86797 * 120.00255 * 359.97438 * 9 7 6
12 12 H 1.48506 * 109.46948 * 89.99987 * 11 9 7
13 13 H 1.48501 * 109.47436 * 210.00238 * 11 9 7
14 14 H 1.48505 * 109.47139 * 330.00513 * 11 9 7
15 15 C 1.46902 * 111.00117 * 160.51370 * 5 4 3
16 16 H 1.08998 * 109.47322 * 307.31941 * 15 5 4
17 17 C 1.53006 * 109.47050 * 67.31732 * 15 5 4
18 18 C 1.52994 * 109.46893 * 180.02562 * 17 15 5
19 19 C 1.52999 * 109.47427 * 299.99569 * 18 17 15
20 20 C 1.53006 * 109.46732 * 60.00333 * 19 18 17
21 21 H 1.08998 * 109.46888 * 60.00347 * 20 19 18
22 22 C 1.53005 * 109.47039 * 180.02562 * 20 19 18
23 23 N 1.46896 * 109.47149 * 295.00223 * 22 20 19
24 24 C 1.52997 * 109.47236 * 187.31902 * 15 5 4
25 25 H 1.08997 * 109.47310 * 300.00033 * 1 2 3
26 26 H 1.08999 * 109.47459 * 60.00310 * 1 2 3
27 27 H 1.09005 * 109.47079 * 179.97438 * 1 2 3
28 28 H 1.09001 * 109.47146 * 300.00150 * 3 2 1
29 29 H 1.09006 * 109.46882 * 59.99525 * 3 2 1
30 30 H 1.09001 * 109.46943 * 188.52409 * 4 3 2
31 31 H 1.08999 * 109.47093 * 308.52262 * 4 3 2
32 32 H 1.09003 * 109.47021 * 279.55458 * 6 5 4
33 33 H 1.09003 * 109.47035 * 39.54925 * 6 5 4
34 34 H 0.97004 * 120.00089 * 180.02562 * 10 9 7
35 35 H 1.08997 * 109.46623 * 299.99971 * 17 15 5
36 36 H 1.08998 * 109.46888 * 59.99942 * 17 15 5
37 37 H 1.08998 * 109.47642 * 60.00109 * 18 17 15
38 38 H 1.09005 * 109.46912 * 179.97438 * 18 17 15
39 39 H 1.08995 * 109.47366 * 180.02562 * 19 18 17
40 40 H 1.08998 * 109.47151 * 300.00841 * 19 18 17
41 41 H 1.09000 * 109.46740 * 55.00253 * 22 20 19
42 42 H 1.08996 * 109.46598 * 174.99999 * 22 20 19
43 43 H 1.00896 * 111.00035 * 180.02562 * 23 22 20
44 44 H 1.00901 * 110.99949 * 303.95606 * 23 22 20
45 45 H 1.09003 * 109.47053 * 299.99498 * 24 15 5
46 46 H 1.08995 * 109.47260 * 59.99893 * 24 15 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4289 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 6 3.5354 1.1847 0.0006
5 7 3.9840 0.6404 -1.2879
6 6 3.7217 -0.8027 -1.3698
7 6 3.7115 -1.2303 -2.8147
8 1 3.7962 -0.4908 -3.5974
9 6 3.5941 -2.5656 -3.1378
10 7 3.5858 -2.9387 -4.3988
11 14 3.4484 -3.8447 -1.7843
12 1 2.0159 -4.0543 -1.4535
13 1 4.0421 -5.1248 -2.2469
14 1 4.1712 -3.3717 -0.5763
15 6 5.4059 0.9307 -1.5157
16 1 5.5832 1.9989 -1.3907
17 6 6.2534 0.1516 -0.5079
18 6 7.7342 0.4546 -0.7448
19 6 8.1193 0.0371 -2.1655
20 6 7.2718 0.8162 -3.1733
21 1 7.4488 1.8844 -3.0480
22 6 7.6564 0.3983 -4.5941
23 7 9.0444 0.7970 -4.8630
24 6 5.7904 0.5129 -2.9364
25 1 -0.3634 0.5138 0.8899
26 1 -0.3634 0.5138 -0.8900
27 1 -0.3633 -1.0277 -0.0005
28 1 1.6885 1.8464 -0.8900
29 1 1.6885 1.8464 0.8900
30 1 3.9777 2.1692 0.1530
31 1 3.8467 0.5181 0.8049
32 1 4.5024 -1.3447 -0.8359
33 1 2.7538 -1.0222 -0.9191
34 1 3.5028 -3.8781 -4.6261
35 1 5.9794 0.4494 0.5042
36 1 6.0761 -0.9165 -0.6330
37 1 7.9112 1.5228 -0.6195
38 1 8.3380 -0.1001 -0.0265
39 1 9.1744 0.2525 -2.3341
40 1 7.9423 -1.0311 -2.2909
41 1 7.5635 -0.6833 -4.6923
42 1 6.9932 0.8862 -5.3083
43 1 9.3224 0.5323 -5.7960
44 1 9.1712 1.7871 -4.7154
45 1 5.6132 -0.5553 -3.0615
46 1 5.1867 1.0679 -3.6544
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000724035660.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:13:49
Heat of formation + Delta-G solvation = -47.229877 kcal
Electronic energy + Delta-G solvation = -22897.332462 eV
Core-core repulsion = 19821.676446 eV
Total energy + Delta-G solvation = -3075.656016 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 270.205 amu
Computer time = 0.45 seconds
Orbital eigenvalues (eV)
-39.16121 -37.50913 -35.75629 -33.52569 -32.42856 -30.30758 -29.76790 -28.40002
-26.70212 -25.40140 -24.22192 -22.07902 -21.54041 -21.34342 -19.48203 -18.57764
-16.72965 -16.02143 -15.92064 -15.47432 -14.89859 -14.41668 -14.29778 -14.16742
-14.04020 -13.87451 -13.64581 -13.14967 -12.49630 -12.37606 -12.25342 -11.81531
-11.55186 -11.44122 -11.33421 -11.13742 -11.04729 -10.77216 -10.72645 -10.34298
-10.27863 -10.15125 -9.84597 -9.73559 -9.49318 -9.46808 -9.03599 -8.84249
-8.40382 -8.31621 -7.16341 -5.91919 -3.81153 3.38476 3.45131 3.49983
4.23882 4.54974 4.68142 4.95944 5.18317 5.33537 5.40474 5.46547
5.51241 5.60338 5.67740 5.67992 5.75234 5.80183 5.86502 5.92729
5.98043 6.02193 6.06886 6.13457 6.24055 6.26530 6.30954 6.33382
6.41756 6.44473 6.72204 6.78818 6.79505 6.87520 7.09631 7.28175
7.32375 7.37121 7.60725 7.64489 7.70333 7.92374 8.06891 8.28387
8.83523 9.18354 9.71596 11.20463
Molecular weight = 270.20amu
Principal moments of inertia in cm(-1)
A = 0.014808 B = 0.007602 C = 0.005916
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1890.359232 B = 3682.382120 C = 4731.679420
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.032 3.968
2 O -0.373 6.373
3 C 0.070 3.930
4 C 0.054 3.946
5 N -0.520 5.520
6 C 0.139 3.861
7 C -0.489 4.489
8 H 0.086 0.914
9 C 0.065 3.935
10 N -0.905 5.905
11 Si 0.867 3.133
12 H -0.278 1.278
13 H -0.291 1.291
14 H -0.268 1.268
15 C 0.104 3.896
16 H 0.055 0.945
17 C -0.155 4.155
18 C -0.111 4.111
19 C -0.103 4.103
20 C -0.081 4.081
21 H 0.051 0.949
22 C 0.066 3.934
23 N -0.851 5.851
24 C -0.116 4.116
25 H 0.030 0.970
26 H 0.040 0.960
27 H 0.079 0.921
28 H 0.056 0.944
29 H 0.038 0.962
30 H 0.072 0.928
31 H 0.033 0.967
32 H -0.004 1.004
33 H 0.057 0.943
34 H 0.260 0.740
35 H 0.047 0.953
36 H 0.075 0.925
37 H 0.051 0.949
38 H 0.050 0.950
39 H 0.062 0.938
40 H 0.059 0.941
41 H 0.076 0.924
42 H 0.025 0.975
43 H 0.335 0.665
44 H 0.333 0.667
45 H 0.120 0.880
46 H 0.057 0.943
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.724 9.199 6.346 11.780
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 O -0.292 6.292
3 C -0.007 4.007
4 C -0.075 4.075
5 N -0.243 5.243
6 C 0.013 3.987
7 C -0.527 4.527
8 H 0.104 0.896
9 C -0.135 4.135
10 N -0.546 5.546
11 Si 0.696 3.304
12 H -0.204 1.204
13 H -0.218 1.218
14 H -0.193 1.193
15 C -0.005 4.005
16 H 0.073 0.927
17 C -0.194 4.194
18 C -0.149 4.149
19 C -0.140 4.140
20 C -0.100 4.100
21 H 0.070 0.930
22 C -0.064 4.064
23 N -0.379 5.379
24 C -0.153 4.153
25 H 0.049 0.951
26 H 0.058 0.942
27 H 0.098 0.902
28 H 0.074 0.926
29 H 0.056 0.944
30 H 0.090 0.910
31 H 0.052 0.948
32 H 0.014 0.986
33 H 0.075 0.925
34 H 0.070 0.930
35 H 0.065 0.935
36 H 0.094 0.906
37 H 0.070 0.930
38 H 0.069 0.931
39 H 0.081 0.919
40 H 0.078 0.922
41 H 0.095 0.905
42 H 0.044 0.956
43 H 0.147 0.853
44 H 0.144 0.856
45 H 0.138 0.862
46 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges 3.706 8.601 6.463 11.379
hybrid contribution -0.349 -0.326 0.581 0.752
sum 3.357 8.275 7.044 11.374
Atomic orbital electron populations
1.22662 0.82482 1.02266 0.99091 1.88059 1.18564 1.27554 1.95025
1.22543 0.94086 0.84944 0.99156 1.22062 0.93292 0.99297 0.92825
1.62248 1.15907 1.18203 1.27953 1.20702 0.97058 0.82601 0.98323
1.21188 1.47419 0.92835 0.91286 0.89599 1.24836 0.95642 0.98181
0.94847 1.69892 1.52067 1.16300 1.16308 0.86977 0.78666 0.81489
0.83312 1.20442 1.21755 1.19293 1.21475 0.86813 0.96866 0.95366
0.92671 1.22295 0.95407 1.02890 0.98847 1.21452 0.96147 1.00116
0.97206 1.21440 0.99106 1.00152 0.93320 1.21183 0.96830 0.98431
0.93562 0.93019 1.21845 0.87096 1.01315 0.96175 1.58786 1.24302
1.21775 1.33065 1.22130 0.91503 1.06979 0.94709 0.95130 0.94165
0.90206 0.92572 0.94368 0.90981 0.94836 0.98611 0.92505 0.93036
0.93468 0.90639 0.93010 0.93104 0.91925 0.92199 0.90543 0.95636
0.85340 0.85573 0.86186 0.92454
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.47 11.01 101.05 1.11 1.58 16
2 O -0.37 -7.03 7.79 -35.23 -0.27 -7.31 16
3 C 0.07 1.13 6.23 37.16 0.23 1.37 16
4 C 0.05 0.93 4.77 -3.83 -0.02 0.91 16
5 N -0.52 -10.68 4.42 -228.09 -1.01 -11.69 16
6 C 0.14 3.34 3.40 -4.98 -0.02 3.32 16
7 C -0.49 -13.39 6.91 -34.44 -0.24 -13.63 16
8 H 0.09 2.54 6.40 -52.48 -0.34 2.20 16
9 C 0.07 1.86 5.47 -17.82 -0.10 1.76 16
10 N -0.91 -27.32 13.96 55.43 0.77 -26.54 16
11 Si 0.87 22.02 27.58 -169.99 -4.69 17.33 16
12 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16
13 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16
14 H -0.27 -6.66 6.39 56.52 0.36 -6.29 16
15 C 0.10 1.92 2.18 -67.71 -0.15 1.77 16
16 H 0.06 0.95 7.90 -51.93 -0.41 0.54 16
17 C -0.16 -2.73 4.59 -26.73 -0.12 -2.85 16
18 C -0.11 -1.69 5.92 -26.73 -0.16 -1.85 16
19 C -0.10 -1.64 5.09 -26.73 -0.14 -1.78 16
20 C -0.08 -1.31 2.33 -90.59 -0.21 -1.52 16
21 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16
22 C 0.07 1.05 6.17 -3.82 -0.02 1.02 16
23 N -0.85 -11.00 9.08 -10.37 -0.09 -11.10 16
24 C -0.12 -2.27 3.16 -26.71 -0.08 -2.36 16
25 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16
26 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16
27 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16
28 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16
29 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16
30 H 0.07 1.05 7.78 -51.93 -0.40 0.65 16
31 H 0.03 0.59 7.38 -51.93 -0.38 0.21 16
32 H 0.00 -0.09 4.14 -51.93 -0.22 -0.31 16
33 H 0.06 1.44 4.59 -51.93 -0.24 1.20 16
34 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16
35 H 0.05 0.78 7.06 -51.93 -0.37 0.41 16
36 H 0.08 1.55 6.02 -51.93 -0.31 1.23 16
37 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16
38 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16
39 H 0.06 0.95 7.75 -51.93 -0.40 0.54 16
40 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16
41 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16
42 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16
43 H 0.34 3.78 9.08 -39.29 -0.36 3.43 16
44 H 0.33 3.77 8.99 -39.29 -0.35 3.42 16
45 H 0.12 2.85 5.14 -51.93 -0.27 2.59 16
46 H 0.06 1.20 7.74 -51.93 -0.40 0.80 16
LS Contribution 338.52 15.07 5.10 5.10
Total: -1.00 -29.99 338.52 -8.37 -38.37
By element:
Atomic # 1 Polarization: 16.36 SS G_CDS: -8.27 Total: 8.09 kcal
Atomic # 6 Polarization: -12.33 SS G_CDS: 0.09 Total: -12.25 kcal
Atomic # 7 Polarization: -49.00 SS G_CDS: -0.33 Total: -49.33 kcal
Atomic # 8 Polarization: -7.03 SS G_CDS: -0.27 Total: -7.31 kcal
Atomic # 14 Polarization: 22.02 SS G_CDS: -4.69 Total: 17.33 kcal
Total LS contribution 5.10 Total: 5.10 kcal
Total: -29.99 -8.37 -38.37 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000724035660.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -8.864 kcal
(2) G-P(sol) polarization free energy of solvation -29.993 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.856 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.373 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.366 kcal
(6) G-S(sol) free energy of system = (1) + (5) -47.230 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.45 seconds