Wall clock time and date at job start Mon Mar 30 2020 05:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42889 * 1 3 3 C 1.42904 * 114.00177 * 2 1 4 4 C 1.53000 * 109.47370 * 179.97438 * 3 2 1 5 5 N 1.46895 * 109.46918 * 68.52519 * 4 3 2 6 6 C 1.46898 * 111.00213 * 284.46713 * 5 4 3 7 7 C 1.50693 * 109.47462 * 159.55184 * 6 5 4 8 8 H 1.08003 * 120.00242 * 354.64309 * 7 6 5 9 9 C 1.37882 * 119.99990 * 174.64252 * 7 6 5 10 10 N 1.31513 * 119.99849 * 180.02562 * 9 7 6 11 11 Si 1.86797 * 120.00255 * 359.97438 * 9 7 6 12 12 H 1.48506 * 109.46948 * 89.99987 * 11 9 7 13 13 H 1.48501 * 109.47436 * 210.00238 * 11 9 7 14 14 H 1.48505 * 109.47139 * 330.00513 * 11 9 7 15 15 C 1.46902 * 111.00117 * 160.51370 * 5 4 3 16 16 H 1.08998 * 109.47322 * 307.31941 * 15 5 4 17 17 C 1.53006 * 109.47050 * 67.31732 * 15 5 4 18 18 C 1.52994 * 109.46893 * 180.02562 * 17 15 5 19 19 C 1.52999 * 109.47427 * 299.99569 * 18 17 15 20 20 C 1.53006 * 109.46732 * 60.00333 * 19 18 17 21 21 H 1.08998 * 109.46888 * 60.00347 * 20 19 18 22 22 C 1.53005 * 109.47039 * 180.02562 * 20 19 18 23 23 N 1.46896 * 109.47149 * 295.00223 * 22 20 19 24 24 C 1.52997 * 109.47236 * 187.31902 * 15 5 4 25 25 H 1.08997 * 109.47310 * 300.00033 * 1 2 3 26 26 H 1.08999 * 109.47459 * 60.00310 * 1 2 3 27 27 H 1.09005 * 109.47079 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47146 * 300.00150 * 3 2 1 29 29 H 1.09006 * 109.46882 * 59.99525 * 3 2 1 30 30 H 1.09001 * 109.46943 * 188.52409 * 4 3 2 31 31 H 1.08999 * 109.47093 * 308.52262 * 4 3 2 32 32 H 1.09003 * 109.47021 * 279.55458 * 6 5 4 33 33 H 1.09003 * 109.47035 * 39.54925 * 6 5 4 34 34 H 0.97004 * 120.00089 * 180.02562 * 10 9 7 35 35 H 1.08997 * 109.46623 * 299.99971 * 17 15 5 36 36 H 1.08998 * 109.46888 * 59.99942 * 17 15 5 37 37 H 1.08998 * 109.47642 * 60.00109 * 18 17 15 38 38 H 1.09005 * 109.46912 * 179.97438 * 18 17 15 39 39 H 1.08995 * 109.47366 * 180.02562 * 19 18 17 40 40 H 1.08998 * 109.47151 * 300.00841 * 19 18 17 41 41 H 1.09000 * 109.46740 * 55.00253 * 22 20 19 42 42 H 1.08996 * 109.46598 * 174.99999 * 22 20 19 43 43 H 1.00896 * 111.00035 * 180.02562 * 23 22 20 44 44 H 1.00901 * 110.99949 * 303.95606 * 23 22 20 45 45 H 1.09003 * 109.47053 * 299.99498 * 24 15 5 46 46 H 1.08995 * 109.47260 * 59.99893 * 24 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9840 0.6404 -1.2879 6 6 3.7217 -0.8027 -1.3698 7 6 3.7115 -1.2303 -2.8147 8 1 3.7962 -0.4908 -3.5974 9 6 3.5941 -2.5656 -3.1378 10 7 3.5858 -2.9387 -4.3988 11 14 3.4484 -3.8447 -1.7843 12 1 2.0159 -4.0543 -1.4535 13 1 4.0421 -5.1248 -2.2469 14 1 4.1712 -3.3717 -0.5763 15 6 5.4059 0.9307 -1.5157 16 1 5.5832 1.9989 -1.3907 17 6 6.2534 0.1516 -0.5079 18 6 7.7342 0.4546 -0.7448 19 6 8.1193 0.0371 -2.1655 20 6 7.2718 0.8162 -3.1733 21 1 7.4488 1.8844 -3.0480 22 6 7.6564 0.3983 -4.5941 23 7 9.0444 0.7970 -4.8630 24 6 5.7904 0.5129 -2.9364 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6885 1.8464 -0.8900 29 1 1.6885 1.8464 0.8900 30 1 3.9777 2.1692 0.1530 31 1 3.8467 0.5181 0.8049 32 1 4.5024 -1.3447 -0.8359 33 1 2.7538 -1.0222 -0.9191 34 1 3.5028 -3.8781 -4.6261 35 1 5.9794 0.4494 0.5042 36 1 6.0761 -0.9165 -0.6330 37 1 7.9112 1.5228 -0.6195 38 1 8.3380 -0.1001 -0.0265 39 1 9.1744 0.2525 -2.3341 40 1 7.9423 -1.0311 -2.2909 41 1 7.5635 -0.6833 -4.6923 42 1 6.9932 0.8862 -5.3083 43 1 9.3224 0.5323 -5.7960 44 1 9.1712 1.7871 -4.7154 45 1 5.6132 -0.5553 -3.0615 46 1 5.1867 1.0679 -3.6544 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724035660.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:49 Heat of formation + Delta-G solvation = -69.643049 kcal Electronic energy + Delta-G solvation = -22898.304370 eV Core-core repulsion = 19821.676446 eV Total energy + Delta-G solvation = -3076.627924 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.64821 -38.82372 -37.18218 -34.92857 -34.44029 -31.76370 -31.08374 -30.21636 -28.15524 -26.78591 -25.57172 -23.92035 -22.91223 -22.73781 -20.90562 -20.15901 -18.75890 -17.45967 -17.26401 -16.74044 -16.42633 -16.02526 -15.72152 -15.56024 -15.43079 -15.31298 -15.10510 -14.64908 -14.41664 -13.92424 -13.57123 -13.24417 -13.21007 -12.86559 -12.79968 -12.63665 -12.47007 -12.37737 -12.24760 -12.00966 -11.89432 -11.67027 -11.57277 -11.35169 -11.06325 -10.89520 -10.77276 -10.55583 -10.29126 -9.54838 -8.78159 -8.14887 -6.05443 1.33568 1.34835 1.44543 2.41108 3.00521 3.20158 3.26468 3.73898 3.84475 4.00427 4.15187 4.25459 4.29813 4.40090 4.44836 4.50258 4.52870 4.58732 4.64707 4.67045 4.74593 4.75608 4.83884 4.86500 4.87696 4.93385 4.96673 5.05486 5.11298 5.19046 5.35979 5.38561 5.47339 5.51263 5.55803 5.67126 5.82892 5.99783 6.17333 6.24375 6.39461 6.65387 6.68744 6.84294 6.94141 7.49464 9.00824 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.014808 B = 0.007602 C = 0.005916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.359232 B = 3682.382120 C = 4731.679420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.412 6.412 3 C 0.068 3.932 4 C 0.052 3.948 5 N -0.537 5.537 6 C 0.154 3.846 7 C -0.473 4.473 8 H 0.051 0.949 9 C 0.009 3.991 10 N -0.950 5.950 11 Si 0.925 3.075 12 H -0.273 1.273 13 H -0.290 1.290 14 H -0.260 1.260 15 C 0.103 3.897 16 H 0.083 0.917 17 C -0.149 4.149 18 C -0.104 4.104 19 C -0.097 4.097 20 C -0.072 4.072 21 H 0.077 0.923 22 C 0.073 3.927 23 N -0.844 5.844 24 C -0.106 4.106 25 H 0.061 0.939 26 H 0.039 0.961 27 H 0.078 0.922 28 H 0.048 0.952 29 H 0.076 0.924 30 H 0.106 0.894 31 H 0.030 0.970 32 H -0.012 1.012 33 H 0.051 0.949 34 H 0.259 0.741 35 H 0.063 0.937 36 H 0.038 0.962 37 H 0.078 0.922 38 H 0.064 0.936 39 H 0.079 0.921 40 H 0.029 0.971 41 H 0.044 0.956 42 H 0.017 0.983 43 H 0.346 0.654 44 H 0.347 0.653 45 H 0.071 0.929 46 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.705 11.228 8.821 15.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.332 6.332 3 C -0.009 4.009 4 C -0.076 4.076 5 N -0.260 5.260 6 C 0.027 3.973 7 C -0.511 4.511 8 H 0.069 0.931 9 C -0.187 4.187 10 N -0.593 5.593 11 Si 0.751 3.249 12 H -0.199 1.199 13 H -0.216 1.216 14 H -0.184 1.184 15 C -0.006 4.006 16 H 0.101 0.899 17 C -0.188 4.188 18 C -0.142 4.142 19 C -0.135 4.135 20 C -0.091 4.091 21 H 0.095 0.905 22 C -0.059 4.059 23 N -0.375 5.375 24 C -0.144 4.144 25 H 0.080 0.920 26 H 0.057 0.943 27 H 0.097 0.903 28 H 0.066 0.934 29 H 0.094 0.906 30 H 0.124 0.876 31 H 0.048 0.952 32 H 0.006 0.994 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.056 0.944 37 H 0.097 0.903 38 H 0.083 0.917 39 H 0.097 0.903 40 H 0.048 0.952 41 H 0.063 0.937 42 H 0.035 0.965 43 H 0.159 0.841 44 H 0.161 0.839 45 H 0.089 0.911 46 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 4.692 10.657 8.954 14.689 hybrid contribution -0.659 -0.848 -0.244 1.101 sum 4.033 9.809 8.709 13.724 Atomic orbital electron populations 1.22803 0.80727 1.02755 1.00544 1.87964 1.20652 1.29244 1.95312 1.22660 0.93387 0.84290 1.00515 1.22234 0.94217 1.00531 0.90607 1.62129 1.17486 1.15681 1.30675 1.20379 0.96416 0.85154 0.95361 1.21360 1.45178 0.92051 0.92550 0.93076 1.25531 0.96158 1.00306 0.96687 1.70030 1.54475 1.16561 1.18279 0.86047 0.78812 0.79082 0.80961 1.19867 1.21584 1.18397 1.21555 0.86051 0.98441 0.94514 0.89866 1.22194 0.97074 1.00257 0.99253 1.21430 0.94328 1.01935 0.96528 1.21386 0.99825 0.98208 0.94056 1.21087 0.94327 0.99869 0.93836 0.90492 1.21629 0.88802 0.99311 0.96114 1.58682 1.21815 1.22925 1.34045 1.21860 0.93820 1.03248 0.95496 0.92036 0.94257 0.90340 0.93418 0.90627 0.87637 0.95153 0.99414 0.93094 0.93198 0.91810 0.94372 0.90342 0.91689 0.90279 0.95214 0.93698 0.96476 0.84106 0.83942 0.91080 0.94842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 11.01 113.37 1.25 2.03 16 2 O -0.41 -14.99 7.79 -148.98 -1.16 -16.15 16 3 C 0.07 2.05 6.23 71.98 0.45 2.50 16 4 C 0.05 1.66 4.77 86.30 0.41 2.07 16 5 N -0.54 -21.70 4.42 -875.54 -3.87 -25.57 16 6 C 0.15 7.50 3.40 85.56 0.29 7.79 16 7 C -0.47 -27.08 6.91 25.60 0.18 -26.90 16 8 H 0.05 3.22 6.40 -2.91 -0.02 3.20 16 9 C 0.01 0.52 5.47 84.66 0.46 0.98 16 10 N -0.95 -60.18 13.96 21.45 0.30 -59.88 16 11 Si 0.92 46.74 27.58 68.60 1.89 48.63 16 12 H -0.27 -13.47 7.11 99.48 0.71 -12.77 16 13 H -0.29 -14.44 7.11 99.48 0.71 -13.74 16 14 H -0.26 -12.63 6.39 99.48 0.64 -12.00 16 15 C 0.10 3.68 2.18 44.92 0.10 3.78 16 16 H 0.08 2.56 7.90 -2.39 -0.02 2.54 16 17 C -0.15 -4.96 4.59 30.59 0.14 -4.82 16 18 C -0.10 -2.85 5.92 30.59 0.18 -2.67 16 19 C -0.10 -2.97 5.09 30.60 0.16 -2.82 16 20 C -0.07 -2.29 2.33 -10.77 -0.03 -2.31 16 21 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 22 C 0.07 2.33 6.17 86.31 0.53 2.86 16 23 N -0.84 -20.60 9.08 -186.72 -1.70 -22.29 16 24 C -0.11 -4.28 3.16 30.61 0.10 -4.18 16 25 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 28 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 30 H 0.11 2.63 7.78 -2.39 -0.02 2.61 16 31 H 0.03 0.99 7.38 -2.39 -0.02 0.98 16 32 H -0.01 -0.59 4.14 -2.39 -0.01 -0.60 16 33 H 0.05 2.60 4.59 -2.39 -0.01 2.59 16 34 H 0.26 15.59 8.31 -92.70 -0.77 14.81 16 35 H 0.06 1.91 7.06 -2.39 -0.02 1.90 16 36 H 0.04 1.56 6.02 -2.39 -0.01 1.54 16 37 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 39 H 0.08 2.18 7.75 -2.39 -0.02 2.16 16 40 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.35 7.38 9.08 -89.70 -0.81 6.57 16 44 H 0.35 6.95 8.99 -89.69 -0.81 6.14 16 45 H 0.07 3.60 5.14 -2.39 -0.01 3.58 16 46 H 0.03 1.46 7.74 -2.39 -0.02 1.44 16 Total: -1.00 -68.49 338.52 -1.04 -69.53 By element: Atomic # 1 Polarization: 28.16 SS G_CDS: -0.73 Total: 27.43 kcal Atomic # 6 Polarization: -25.92 SS G_CDS: 4.22 Total: -21.70 kcal Atomic # 7 Polarization: -102.48 SS G_CDS: -5.26 Total: -107.74 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: -1.16 Total: -16.15 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 1.89 Total: 48.63 kcal Total: -68.49 -1.04 -69.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724035660.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.109 kcal (2) G-P(sol) polarization free energy of solvation -68.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds