Wall clock time and date at job start Mon Mar 30 2020 05:13:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42889 * 1
3 3 C 1.42904 * 114.00177 * 2 1
4 4 C 1.53000 * 109.47370 * 179.97438 * 3 2 1
5 5 N 1.46895 * 109.46918 * 68.52519 * 4 3 2
6 6 C 1.46898 * 111.00213 * 284.46713 * 5 4 3
7 7 C 1.50693 * 109.47462 * 159.55184 * 6 5 4
8 8 H 1.08003 * 120.00242 * 354.64309 * 7 6 5
9 9 C 1.37882 * 119.99990 * 174.64252 * 7 6 5
10 10 N 1.31513 * 119.99849 * 180.02562 * 9 7 6
11 11 Si 1.86797 * 120.00255 * 359.97438 * 9 7 6
12 12 H 1.48506 * 109.46948 * 89.99987 * 11 9 7
13 13 H 1.48501 * 109.47436 * 210.00238 * 11 9 7
14 14 H 1.48505 * 109.47139 * 330.00513 * 11 9 7
15 15 C 1.46902 * 111.00117 * 160.51370 * 5 4 3
16 16 H 1.08998 * 109.47322 * 307.31941 * 15 5 4
17 17 C 1.53006 * 109.47050 * 67.31732 * 15 5 4
18 18 C 1.52994 * 109.46893 * 180.02562 * 17 15 5
19 19 C 1.52999 * 109.47427 * 299.99569 * 18 17 15
20 20 C 1.53006 * 109.46732 * 60.00333 * 19 18 17
21 21 H 1.08998 * 109.46888 * 60.00347 * 20 19 18
22 22 C 1.53005 * 109.47039 * 180.02562 * 20 19 18
23 23 N 1.46896 * 109.47149 * 295.00223 * 22 20 19
24 24 C 1.52997 * 109.47236 * 187.31902 * 15 5 4
25 25 H 1.08997 * 109.47310 * 300.00033 * 1 2 3
26 26 H 1.08999 * 109.47459 * 60.00310 * 1 2 3
27 27 H 1.09005 * 109.47079 * 179.97438 * 1 2 3
28 28 H 1.09001 * 109.47146 * 300.00150 * 3 2 1
29 29 H 1.09006 * 109.46882 * 59.99525 * 3 2 1
30 30 H 1.09001 * 109.46943 * 188.52409 * 4 3 2
31 31 H 1.08999 * 109.47093 * 308.52262 * 4 3 2
32 32 H 1.09003 * 109.47021 * 279.55458 * 6 5 4
33 33 H 1.09003 * 109.47035 * 39.54925 * 6 5 4
34 34 H 0.97004 * 120.00089 * 180.02562 * 10 9 7
35 35 H 1.08997 * 109.46623 * 299.99971 * 17 15 5
36 36 H 1.08998 * 109.46888 * 59.99942 * 17 15 5
37 37 H 1.08998 * 109.47642 * 60.00109 * 18 17 15
38 38 H 1.09005 * 109.46912 * 179.97438 * 18 17 15
39 39 H 1.08995 * 109.47366 * 180.02562 * 19 18 17
40 40 H 1.08998 * 109.47151 * 300.00841 * 19 18 17
41 41 H 1.09000 * 109.46740 * 55.00253 * 22 20 19
42 42 H 1.08996 * 109.46598 * 174.99999 * 22 20 19
43 43 H 1.00896 * 111.00035 * 180.02562 * 23 22 20
44 44 H 1.00901 * 110.99949 * 303.95606 * 23 22 20
45 45 H 1.09003 * 109.47053 * 299.99498 * 24 15 5
46 46 H 1.08995 * 109.47260 * 59.99893 * 24 15 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4289 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 6 3.5354 1.1847 0.0006
5 7 3.9840 0.6404 -1.2879
6 6 3.7217 -0.8027 -1.3698
7 6 3.7115 -1.2303 -2.8147
8 1 3.7962 -0.4908 -3.5974
9 6 3.5941 -2.5656 -3.1378
10 7 3.5858 -2.9387 -4.3988
11 14 3.4484 -3.8447 -1.7843
12 1 2.0159 -4.0543 -1.4535
13 1 4.0421 -5.1248 -2.2469
14 1 4.1712 -3.3717 -0.5763
15 6 5.4059 0.9307 -1.5157
16 1 5.5832 1.9989 -1.3907
17 6 6.2534 0.1516 -0.5079
18 6 7.7342 0.4546 -0.7448
19 6 8.1193 0.0371 -2.1655
20 6 7.2718 0.8162 -3.1733
21 1 7.4488 1.8844 -3.0480
22 6 7.6564 0.3983 -4.5941
23 7 9.0444 0.7970 -4.8630
24 6 5.7904 0.5129 -2.9364
25 1 -0.3634 0.5138 0.8899
26 1 -0.3634 0.5138 -0.8900
27 1 -0.3633 -1.0277 -0.0005
28 1 1.6885 1.8464 -0.8900
29 1 1.6885 1.8464 0.8900
30 1 3.9777 2.1692 0.1530
31 1 3.8467 0.5181 0.8049
32 1 4.5024 -1.3447 -0.8359
33 1 2.7538 -1.0222 -0.9191
34 1 3.5028 -3.8781 -4.6261
35 1 5.9794 0.4494 0.5042
36 1 6.0761 -0.9165 -0.6330
37 1 7.9112 1.5228 -0.6195
38 1 8.3380 -0.1001 -0.0265
39 1 9.1744 0.2525 -2.3341
40 1 7.9423 -1.0311 -2.2909
41 1 7.5635 -0.6833 -4.6923
42 1 6.9932 0.8862 -5.3083
43 1 9.3224 0.5323 -5.7960
44 1 9.1712 1.7871 -4.7154
45 1 5.6132 -0.5553 -3.0615
46 1 5.1867 1.0679 -3.6544
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000724035660.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:13:49
Heat of formation + Delta-G solvation = -69.643049 kcal
Electronic energy + Delta-G solvation = -22898.304370 eV
Core-core repulsion = 19821.676446 eV
Total energy + Delta-G solvation = -3076.627924 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 270.205 amu
Computer time = 0.59 seconds
Orbital eigenvalues (eV)
-40.64821 -38.82372 -37.18218 -34.92857 -34.44029 -31.76370 -31.08374 -30.21636
-28.15524 -26.78591 -25.57172 -23.92035 -22.91223 -22.73781 -20.90562 -20.15901
-18.75890 -17.45967 -17.26401 -16.74044 -16.42633 -16.02526 -15.72152 -15.56024
-15.43079 -15.31298 -15.10510 -14.64908 -14.41664 -13.92424 -13.57123 -13.24417
-13.21007 -12.86559 -12.79968 -12.63665 -12.47007 -12.37737 -12.24760 -12.00966
-11.89432 -11.67027 -11.57277 -11.35169 -11.06325 -10.89520 -10.77276 -10.55583
-10.29126 -9.54838 -8.78159 -8.14887 -6.05443 1.33568 1.34835 1.44543
2.41108 3.00521 3.20158 3.26468 3.73898 3.84475 4.00427 4.15187
4.25459 4.29813 4.40090 4.44836 4.50258 4.52870 4.58732 4.64707
4.67045 4.74593 4.75608 4.83884 4.86500 4.87696 4.93385 4.96673
5.05486 5.11298 5.19046 5.35979 5.38561 5.47339 5.51263 5.55803
5.67126 5.82892 5.99783 6.17333 6.24375 6.39461 6.65387 6.68744
6.84294 6.94141 7.49464 9.00824
Molecular weight = 270.20amu
Principal moments of inertia in cm(-1)
A = 0.014808 B = 0.007602 C = 0.005916
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1890.359232 B = 3682.382120 C = 4731.679420
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.028 3.972
2 O -0.412 6.412
3 C 0.068 3.932
4 C 0.052 3.948
5 N -0.537 5.537
6 C 0.154 3.846
7 C -0.473 4.473
8 H 0.051 0.949
9 C 0.009 3.991
10 N -0.950 5.950
11 Si 0.925 3.075
12 H -0.273 1.273
13 H -0.290 1.290
14 H -0.260 1.260
15 C 0.103 3.897
16 H 0.083 0.917
17 C -0.149 4.149
18 C -0.104 4.104
19 C -0.097 4.097
20 C -0.072 4.072
21 H 0.077 0.923
22 C 0.073 3.927
23 N -0.844 5.844
24 C -0.106 4.106
25 H 0.061 0.939
26 H 0.039 0.961
27 H 0.078 0.922
28 H 0.048 0.952
29 H 0.076 0.924
30 H 0.106 0.894
31 H 0.030 0.970
32 H -0.012 1.012
33 H 0.051 0.949
34 H 0.259 0.741
35 H 0.063 0.937
36 H 0.038 0.962
37 H 0.078 0.922
38 H 0.064 0.936
39 H 0.079 0.921
40 H 0.029 0.971
41 H 0.044 0.956
42 H 0.017 0.983
43 H 0.346 0.654
44 H 0.347 0.653
45 H 0.071 0.929
46 H 0.033 0.967
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.705 11.228 8.821 15.034
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.068 4.068
2 O -0.332 6.332
3 C -0.009 4.009
4 C -0.076 4.076
5 N -0.260 5.260
6 C 0.027 3.973
7 C -0.511 4.511
8 H 0.069 0.931
9 C -0.187 4.187
10 N -0.593 5.593
11 Si 0.751 3.249
12 H -0.199 1.199
13 H -0.216 1.216
14 H -0.184 1.184
15 C -0.006 4.006
16 H 0.101 0.899
17 C -0.188 4.188
18 C -0.142 4.142
19 C -0.135 4.135
20 C -0.091 4.091
21 H 0.095 0.905
22 C -0.059 4.059
23 N -0.375 5.375
24 C -0.144 4.144
25 H 0.080 0.920
26 H 0.057 0.943
27 H 0.097 0.903
28 H 0.066 0.934
29 H 0.094 0.906
30 H 0.124 0.876
31 H 0.048 0.952
32 H 0.006 0.994
33 H 0.069 0.931
34 H 0.068 0.932
35 H 0.082 0.918
36 H 0.056 0.944
37 H 0.097 0.903
38 H 0.083 0.917
39 H 0.097 0.903
40 H 0.048 0.952
41 H 0.063 0.937
42 H 0.035 0.965
43 H 0.159 0.841
44 H 0.161 0.839
45 H 0.089 0.911
46 H 0.052 0.948
Dipole moment (debyes) X Y Z Total
from point charges 4.692 10.657 8.954 14.689
hybrid contribution -0.659 -0.848 -0.244 1.101
sum 4.033 9.809 8.709 13.724
Atomic orbital electron populations
1.22803 0.80727 1.02755 1.00544 1.87964 1.20652 1.29244 1.95312
1.22660 0.93387 0.84290 1.00515 1.22234 0.94217 1.00531 0.90607
1.62129 1.17486 1.15681 1.30675 1.20379 0.96416 0.85154 0.95361
1.21360 1.45178 0.92051 0.92550 0.93076 1.25531 0.96158 1.00306
0.96687 1.70030 1.54475 1.16561 1.18279 0.86047 0.78812 0.79082
0.80961 1.19867 1.21584 1.18397 1.21555 0.86051 0.98441 0.94514
0.89866 1.22194 0.97074 1.00257 0.99253 1.21430 0.94328 1.01935
0.96528 1.21386 0.99825 0.98208 0.94056 1.21087 0.94327 0.99869
0.93836 0.90492 1.21629 0.88802 0.99311 0.96114 1.58682 1.21815
1.22925 1.34045 1.21860 0.93820 1.03248 0.95496 0.92036 0.94257
0.90340 0.93418 0.90627 0.87637 0.95153 0.99414 0.93094 0.93198
0.91810 0.94372 0.90342 0.91689 0.90279 0.95214 0.93698 0.96476
0.84106 0.83942 0.91080 0.94842
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.78 11.01 113.37 1.25 2.03 16
2 O -0.41 -14.99 7.79 -148.98 -1.16 -16.15 16
3 C 0.07 2.05 6.23 71.98 0.45 2.50 16
4 C 0.05 1.66 4.77 86.30 0.41 2.07 16
5 N -0.54 -21.70 4.42 -875.54 -3.87 -25.57 16
6 C 0.15 7.50 3.40 85.56 0.29 7.79 16
7 C -0.47 -27.08 6.91 25.60 0.18 -26.90 16
8 H 0.05 3.22 6.40 -2.91 -0.02 3.20 16
9 C 0.01 0.52 5.47 84.66 0.46 0.98 16
10 N -0.95 -60.18 13.96 21.45 0.30 -59.88 16
11 Si 0.92 46.74 27.58 68.60 1.89 48.63 16
12 H -0.27 -13.47 7.11 99.48 0.71 -12.77 16
13 H -0.29 -14.44 7.11 99.48 0.71 -13.74 16
14 H -0.26 -12.63 6.39 99.48 0.64 -12.00 16
15 C 0.10 3.68 2.18 44.92 0.10 3.78 16
16 H 0.08 2.56 7.90 -2.39 -0.02 2.54 16
17 C -0.15 -4.96 4.59 30.59 0.14 -4.82 16
18 C -0.10 -2.85 5.92 30.59 0.18 -2.67 16
19 C -0.10 -2.97 5.09 30.60 0.16 -2.82 16
20 C -0.07 -2.29 2.33 -10.77 -0.03 -2.31 16
21 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16
22 C 0.07 2.33 6.17 86.31 0.53 2.86 16
23 N -0.84 -20.60 9.08 -186.72 -1.70 -22.29 16
24 C -0.11 -4.28 3.16 30.61 0.10 -4.18 16
25 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16
26 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16
27 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16
28 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16
29 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16
30 H 0.11 2.63 7.78 -2.39 -0.02 2.61 16
31 H 0.03 0.99 7.38 -2.39 -0.02 0.98 16
32 H -0.01 -0.59 4.14 -2.39 -0.01 -0.60 16
33 H 0.05 2.60 4.59 -2.39 -0.01 2.59 16
34 H 0.26 15.59 8.31 -92.70 -0.77 14.81 16
35 H 0.06 1.91 7.06 -2.39 -0.02 1.90 16
36 H 0.04 1.56 6.02 -2.39 -0.01 1.54 16
37 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16
38 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16
39 H 0.08 2.18 7.75 -2.39 -0.02 2.16 16
40 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16
41 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16
42 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16
43 H 0.35 7.38 9.08 -89.70 -0.81 6.57 16
44 H 0.35 6.95 8.99 -89.69 -0.81 6.14 16
45 H 0.07 3.60 5.14 -2.39 -0.01 3.58 16
46 H 0.03 1.46 7.74 -2.39 -0.02 1.44 16
Total: -1.00 -68.49 338.52 -1.04 -69.53
By element:
Atomic # 1 Polarization: 28.16 SS G_CDS: -0.73 Total: 27.43 kcal
Atomic # 6 Polarization: -25.92 SS G_CDS: 4.22 Total: -21.70 kcal
Atomic # 7 Polarization: -102.48 SS G_CDS: -5.26 Total: -107.74 kcal
Atomic # 8 Polarization: -14.99 SS G_CDS: -1.16 Total: -16.15 kcal
Atomic # 14 Polarization: 46.74 SS G_CDS: 1.89 Total: 48.63 kcal
Total: -68.49 -1.04 -69.53 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000724035660.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -0.109 kcal
(2) G-P(sol) polarization free energy of solvation -68.492 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.600 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.043 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.534 kcal
(6) G-S(sol) free energy of system = (1) + (5) -69.643 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.59 seconds