Wall clock time and date at job start Mon Mar 30 2020 05:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50697 * 109.47466 * 180.02562 * 3 2 1 5 5 N 1.30490 * 126.31329 * 90.02336 * 4 3 2 6 6 N 1.28533 * 110.05862 * 179.97438 * 5 4 3 7 7 C 1.31396 * 109.79789 * 0.02562 * 6 5 4 8 8 S 1.76204 * 126.49125 * 180.02562 * 7 6 5 9 9 C 1.76198 * 100.00192 * 359.97438 * 8 7 6 10 10 H 1.08001 * 119.99803 * 0.02562 * 9 8 7 11 11 C 1.38663 * 120.00047 * 179.97438 * 9 8 7 12 12 N 1.31640 * 120.00037 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00038 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47255 * 90.00198 * 13 11 9 15 15 H 1.48502 * 109.47256 * 210.00301 * 13 11 9 16 16 H 1.48497 * 109.47392 * 330.00435 * 13 11 9 17 17 N 1.36481 * 126.31526 * 269.71670 * 4 3 2 18 18 C 1.46497 * 127.12163 * 359.97438 * 17 4 3 19 19 C 1.50693 * 109.47102 * 90.00390 * 18 17 4 20 20 O 1.20827 * 120.00226 * 359.97438 * 19 18 17 21 21 O 1.34230 * 120.00260 * 179.97438 * 19 18 17 22 22 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 23 23 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 25 25 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 26 26 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 27 27 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 28 28 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 29 29 H 0.97006 * 119.99556 * 179.97438 * 12 11 9 30 30 H 1.08999 * 109.46932 * 210.00055 * 18 17 4 31 31 H 1.08991 * 109.47285 * 330.00122 * 18 17 4 32 32 H 0.96698 * 116.99767 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4426 -0.0006 5 7 4.3193 1.4432 -1.0524 6 7 5.5534 1.4437 -0.6932 7 6 5.6351 1.4428 0.6182 8 16 7.1142 1.4435 1.5759 9 6 8.3142 1.4449 0.2858 10 1 7.9970 1.4455 -0.7467 11 6 9.6657 1.4464 0.5959 12 7 10.0522 1.4462 1.8543 13 14 10.9378 1.4471 -0.7719 14 1 11.2736 2.8473 -1.1348 15 1 12.1635 0.7484 -0.3084 16 1 10.3879 0.7462 -1.9599 17 7 4.3557 1.4479 1.0987 18 6 3.9387 1.4551 2.5031 19 6 3.7954 0.0369 2.9918 20 8 4.0182 -0.8854 2.2437 21 8 3.4201 -0.2019 4.2583 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8934 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.6766 1.9563 -0.8900 28 1 1.6767 1.9564 0.8899 29 1 10.9977 1.4468 2.0712 30 1 4.6885 1.9718 3.1021 31 1 2.9823 1.9697 2.5954 32 1 3.3415 -1.1279 4.5256 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000013201500.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:33 Heat of formation + Delta-G solvation = -29.759147 kcal Electronic energy + Delta-G solvation = -18610.894217 eV Core-core repulsion = 15505.823466 eV Total energy + Delta-G solvation = -3105.070752 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.19303 -40.14371 -36.29266 -35.28292 -34.34747 -32.65247 -30.34638 -28.64941 -26.80905 -25.55656 -22.79424 -21.96201 -21.67265 -20.05827 -18.34066 -18.03880 -16.98716 -16.42621 -16.10337 -15.45356 -14.93281 -14.92492 -14.68137 -14.50006 -13.37124 -13.19696 -13.10172 -12.76669 -12.27024 -11.77762 -11.62763 -11.42304 -11.33534 -11.13067 -11.04797 -10.89298 -10.75983 -10.63567 -10.19142 -9.80579 -9.78957 -9.54170 -8.88200 -8.79589 -6.77924 -6.46942 -4.21054 2.02012 2.08429 2.42288 2.88652 3.20722 3.24393 3.31501 3.35764 3.60363 4.01327 4.53335 4.57712 4.80240 4.90128 4.97427 4.99616 5.06785 5.14036 5.27774 5.39407 5.62436 5.70767 5.91569 5.95793 6.17534 6.26321 6.36345 6.38592 6.72532 7.26136 7.57870 7.76111 8.38290 9.05448 9.47583 10.61619 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.024841 B = 0.005744 C = 0.004934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.883376 B = 4873.595316 C = 5673.614353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.023 4.023 4 C 0.152 3.848 5 N -0.285 5.285 6 N -0.305 5.305 7 C 0.180 3.820 8 S 0.129 5.871 9 C -0.528 4.528 10 H 0.106 0.894 11 C 0.075 3.925 12 N -0.879 5.879 13 Si 0.933 3.067 14 H -0.273 1.273 15 H -0.281 1.281 16 H -0.266 1.266 17 N -0.472 5.472 18 C 0.124 3.876 19 C 0.461 3.539 20 O -0.485 6.485 21 O -0.514 6.514 22 H 0.057 0.943 23 H 0.055 0.945 24 H 0.052 0.948 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.095 0.905 28 H 0.073 0.927 29 H 0.274 0.726 30 H 0.139 0.861 31 H 0.133 0.867 32 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.294 -0.334 5.647 17.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.063 4.063 4 C -0.118 4.118 5 N -0.124 5.124 6 N -0.149 5.149 7 C -0.190 4.190 8 S 0.361 5.639 9 C -0.677 4.677 10 H 0.124 0.876 11 C -0.134 4.134 12 N -0.514 5.514 13 Si 0.758 3.242 14 H -0.199 1.199 15 H -0.207 1.207 16 H -0.190 1.190 17 N -0.171 5.171 18 C -0.003 4.003 19 C 0.299 3.701 20 O -0.370 6.370 21 O -0.327 6.327 22 H 0.076 0.924 23 H 0.074 0.926 24 H 0.071 0.929 25 H 0.080 0.920 26 H 0.089 0.911 27 H 0.113 0.887 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.157 0.843 31 H 0.151 0.849 32 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -15.366 -0.183 5.126 16.200 hybrid contribution 0.240 -0.719 -0.384 0.850 sum -15.126 -0.902 4.741 15.877 Atomic orbital electron populations 1.21761 0.95339 1.01771 1.01767 1.21528 0.95503 0.95666 1.03260 1.19932 0.84468 0.98236 1.03633 1.24612 0.95758 1.08572 0.82896 1.73904 0.97511 1.16858 1.24085 1.74762 1.09900 1.22874 1.07352 1.28358 0.91376 1.03204 0.96095 1.83304 0.86309 1.86671 1.07642 1.23176 0.90913 1.58576 0.95040 0.87640 1.25071 0.97816 0.93471 0.97027 1.69950 1.17479 1.46996 1.17015 0.85906 0.78852 0.78712 0.80691 1.19893 1.20680 1.18984 1.45805 1.06063 1.59752 1.05483 1.20954 1.05792 0.91887 0.81620 1.23586 0.73622 0.92906 0.79958 1.90825 1.44205 1.45783 1.56139 1.84467 1.81003 1.36806 1.30378 0.92397 0.92618 0.92850 0.92041 0.91070 0.88690 0.90866 0.91647 0.84313 0.84949 0.72731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.91 37.16 0.37 -0.94 16 2 C -0.12 -1.47 5.92 -26.73 -0.16 -1.62 16 3 C -0.02 -0.29 5.58 -27.89 -0.16 -0.44 16 4 C 0.15 2.79 7.32 -154.10 -1.13 1.66 16 5 N -0.29 -6.53 12.18 32.97 0.40 -6.13 16 6 N -0.31 -7.90 11.04 30.72 0.34 -7.56 16 7 C 0.18 4.26 8.06 -88.12 -0.71 3.55 16 8 S 0.13 3.24 21.39 -107.50 -2.30 0.94 16 9 C -0.53 -15.06 9.37 30.89 0.29 -14.77 16 10 H 0.11 3.12 6.93 -52.49 -0.36 2.76 16 11 C 0.08 2.07 5.49 -17.48 -0.10 1.98 16 12 N -0.88 -24.69 13.22 55.48 0.73 -23.95 16 13 Si 0.93 21.60 29.55 -169.99 -5.02 16.57 16 14 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 15 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 16 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 17 N -0.47 -8.77 2.30 -114.79 -0.26 -9.03 16 18 C 0.12 1.63 6.47 -5.20 -0.03 1.59 16 19 C 0.46 6.30 8.36 36.00 0.30 6.60 16 20 O -0.48 -8.78 16.47 -18.75 -0.31 -9.09 16 21 O -0.51 -4.97 13.42 -39.26 -0.53 -5.49 16 22 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.83 7.37 -51.93 -0.38 0.44 16 26 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 27 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.07 0.70 7.25 -51.93 -0.38 0.32 16 29 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.14 1.69 7.87 -51.93 -0.41 1.28 16 31 H 0.13 1.13 7.23 -51.93 -0.38 0.76 16 32 H 0.41 2.39 9.10 45.56 0.41 2.81 16 LS Contribution 302.15 15.07 4.55 4.55 Total: -1.00 -36.08 302.15 -6.46 -42.54 By element: Atomic # 1 Polarization: 1.79 SS G_CDS: -2.74 Total: -0.95 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: -1.32 Total: -2.40 kcal Atomic # 7 Polarization: -47.89 SS G_CDS: 1.21 Total: -46.68 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: -0.84 Total: -14.58 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: 3.24 SS G_CDS: -2.30 Total: 0.94 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -36.08 -6.46 -42.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013201500.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.783 kcal (2) G-P(sol) polarization free energy of solvation -36.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds