Wall clock time and date at job start Mon Mar 30 2020 05:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50697 * 109.47466 * 180.02562 * 3 2 1 5 5 N 1.30490 * 126.31329 * 90.02336 * 4 3 2 6 6 N 1.28533 * 110.05862 * 179.97438 * 5 4 3 7 7 C 1.31396 * 109.79789 * 0.02562 * 6 5 4 8 8 S 1.76204 * 126.49125 * 180.02562 * 7 6 5 9 9 C 1.76198 * 100.00192 * 359.97438 * 8 7 6 10 10 H 1.08001 * 119.99803 * 0.02562 * 9 8 7 11 11 C 1.38663 * 120.00047 * 179.97438 * 9 8 7 12 12 N 1.31640 * 120.00037 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00038 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47255 * 90.00198 * 13 11 9 15 15 H 1.48502 * 109.47256 * 210.00301 * 13 11 9 16 16 H 1.48497 * 109.47392 * 330.00435 * 13 11 9 17 17 N 1.36481 * 126.31526 * 269.71670 * 4 3 2 18 18 C 1.46497 * 127.12163 * 359.97438 * 17 4 3 19 19 C 1.50693 * 109.47102 * 90.00390 * 18 17 4 20 20 O 1.20827 * 120.00226 * 359.97438 * 19 18 17 21 21 O 1.34230 * 120.00260 * 179.97438 * 19 18 17 22 22 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 23 23 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 25 25 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 26 26 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 27 27 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 28 28 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 29 29 H 0.97006 * 119.99556 * 179.97438 * 12 11 9 30 30 H 1.08999 * 109.46932 * 210.00055 * 18 17 4 31 31 H 1.08991 * 109.47285 * 330.00122 * 18 17 4 32 32 H 0.96698 * 116.99767 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4426 -0.0006 5 7 4.3193 1.4432 -1.0524 6 7 5.5534 1.4437 -0.6932 7 6 5.6351 1.4428 0.6182 8 16 7.1142 1.4435 1.5759 9 6 8.3142 1.4449 0.2858 10 1 7.9970 1.4455 -0.7467 11 6 9.6657 1.4464 0.5959 12 7 10.0522 1.4462 1.8543 13 14 10.9378 1.4471 -0.7719 14 1 11.2736 2.8473 -1.1348 15 1 12.1635 0.7484 -0.3084 16 1 10.3879 0.7462 -1.9599 17 7 4.3557 1.4479 1.0987 18 6 3.9387 1.4551 2.5031 19 6 3.7954 0.0369 2.9918 20 8 4.0182 -0.8854 2.2437 21 8 3.4201 -0.2019 4.2583 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8934 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.6766 1.9563 -0.8900 28 1 1.6767 1.9564 0.8899 29 1 10.9977 1.4468 2.0712 30 1 4.6885 1.9718 3.1021 31 1 2.9823 1.9697 2.5954 32 1 3.3415 -1.1279 4.5256 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000013201500.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:32 Heat of formation + Delta-G solvation = -54.895545 kcal Electronic energy + Delta-G solvation = -18611.984213 eV Core-core repulsion = 15505.823466 eV Total energy + Delta-G solvation = -3106.160748 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.79555 -41.24960 -37.31660 -36.42064 -35.66890 -34.74944 -31.74490 -29.92653 -28.19762 -27.45916 -24.16641 -23.27680 -22.83570 -21.39211 -19.94917 -19.35161 -18.30452 -17.84076 -17.29463 -16.97745 -16.83956 -16.38000 -15.80188 -15.76086 -14.90821 -14.31177 -14.22303 -13.82241 -13.47101 -13.13225 -13.04379 -12.99868 -12.69982 -12.65099 -12.36830 -12.22932 -12.14936 -12.03593 -11.70806 -11.51050 -11.47206 -11.18464 -10.85360 -10.60812 -8.72445 -8.54576 -6.32571 0.54415 0.75264 1.01557 1.35183 1.38057 1.49609 1.54384 1.89876 2.08544 2.14234 2.86477 2.98212 3.36117 3.54931 3.82222 4.01213 4.07901 4.13654 4.34192 4.39860 4.62146 4.70309 4.91398 4.93313 5.03023 5.19346 5.27241 5.42208 5.44819 5.49015 5.86872 6.19652 6.84350 6.93603 7.78889 8.55067 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.024841 B = 0.005744 C = 0.004934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.883376 B = 4873.595316 C = 5673.614353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.115 4.115 3 C -0.024 4.024 4 C 0.183 3.817 5 N -0.336 5.336 6 N -0.351 5.351 7 C 0.163 3.837 8 S 0.117 5.883 9 C -0.560 4.560 10 H 0.082 0.918 11 C 0.034 3.966 12 N -0.902 5.902 13 Si 0.994 3.006 14 H -0.262 1.262 15 H -0.264 1.264 16 H -0.275 1.275 17 N -0.464 5.464 18 C 0.108 3.892 19 C 0.472 3.528 20 O -0.538 6.538 21 O -0.494 6.494 22 H 0.067 0.933 23 H 0.057 0.943 24 H 0.075 0.925 25 H 0.048 0.952 26 H 0.041 0.959 27 H 0.110 0.890 28 H 0.120 0.880 29 H 0.281 0.719 30 H 0.150 0.850 31 H 0.190 0.810 32 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.482 0.281 6.900 19.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.155 4.155 3 C -0.063 4.063 4 C -0.088 4.088 5 N -0.174 5.174 6 N -0.194 5.194 7 C -0.210 4.210 8 S 0.348 5.652 9 C -0.708 4.708 10 H 0.101 0.899 11 C -0.172 4.172 12 N -0.538 5.538 13 Si 0.816 3.184 14 H -0.187 1.187 15 H -0.188 1.188 16 H -0.200 1.200 17 N -0.161 5.161 18 C -0.015 4.015 19 C 0.313 3.687 20 O -0.427 6.427 21 O -0.308 6.308 22 H 0.086 0.914 23 H 0.076 0.924 24 H 0.094 0.906 25 H 0.067 0.933 26 H 0.060 0.940 27 H 0.128 0.872 28 H 0.138 0.862 29 H 0.091 0.909 30 H 0.167 0.833 31 H 0.207 0.793 32 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges -17.604 0.433 6.435 18.749 hybrid contribution 0.683 -0.939 -0.683 1.347 sum -16.922 -0.507 5.751 17.879 Atomic orbital electron populations 1.21708 0.92162 1.02548 1.03375 1.21456 0.98083 0.94653 1.01258 1.20357 0.80018 0.99293 1.06662 1.25758 0.97865 1.03408 0.81799 1.73812 0.97073 1.20176 1.26301 1.74627 1.11991 1.23751 1.09021 1.27990 0.92659 1.04634 0.95764 1.82838 0.86667 1.88459 1.07241 1.23282 0.92641 1.59865 0.95019 0.89938 1.25891 0.99274 0.92693 0.99372 1.69994 1.18317 1.47132 1.18375 0.85016 0.76730 0.79230 0.77472 1.18694 1.18840 1.19963 1.45998 1.04223 1.58028 1.07858 1.21577 1.08865 0.92498 0.78600 1.23533 0.72359 0.92372 0.80466 1.90832 1.46840 1.47245 1.57757 1.84417 1.79781 1.38657 1.27912 0.91430 0.92367 0.90564 0.93329 0.93999 0.87212 0.86235 0.90938 0.83253 0.79280 0.70427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.91 71.98 0.71 -1.24 16 2 C -0.12 -2.54 5.92 30.59 0.18 -2.36 16 3 C -0.02 -0.52 5.58 29.85 0.17 -0.35 16 4 C 0.18 6.52 7.32 137.67 1.01 7.53 16 5 N -0.34 -15.70 12.18 -49.60 -0.60 -16.30 16 6 N -0.35 -18.88 11.04 -56.71 -0.63 -19.51 16 7 C 0.16 7.91 8.06 179.47 1.45 9.36 16 8 S 0.12 6.07 21.39 -56.49 -1.21 4.86 16 9 C -0.56 -33.13 9.37 67.92 0.64 -32.49 16 10 H 0.08 5.15 6.93 -2.91 -0.02 5.13 16 11 C 0.03 1.92 5.49 84.82 0.47 2.38 16 12 N -0.90 -51.20 13.22 21.62 0.29 -50.91 16 13 Si 0.99 44.88 29.55 68.60 2.03 46.91 16 14 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 15 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 16 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 17 N -0.46 -16.79 2.30 -517.08 -1.19 -17.97 16 18 C 0.11 2.53 6.47 85.63 0.55 3.09 16 19 C 0.47 11.86 8.36 71.23 0.60 12.46 16 20 O -0.54 -19.19 16.47 21.96 0.36 -18.82 16 21 O -0.49 -7.91 13.42 -51.42 -0.69 -8.60 16 22 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 23 H 0.06 0.80 8.14 -2.39 -0.02 0.79 16 24 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.05 1.21 7.37 -2.39 -0.02 1.19 16 26 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.12 1.56 7.25 -2.39 -0.02 1.54 16 29 H 0.28 14.69 8.31 -92.70 -0.77 13.92 16 30 H 0.15 3.28 7.87 -2.39 -0.02 3.26 16 31 H 0.19 2.19 7.23 -2.39 -0.02 2.17 16 32 H 0.43 3.70 9.10 -74.06 -0.67 3.03 16 Total: -1.00 -83.69 302.15 4.61 -79.07 By element: Atomic # 1 Polarization: 2.44 SS G_CDS: 0.49 Total: 2.92 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: 5.77 Total: -1.64 kcal Atomic # 7 Polarization: -102.56 SS G_CDS: -2.13 Total: -104.69 kcal Atomic # 8 Polarization: -27.10 SS G_CDS: -0.33 Total: -27.43 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Atomic # 16 Polarization: 6.07 SS G_CDS: -1.21 Total: 4.86 kcal Total: -83.69 4.61 -79.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013201500.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.178 kcal (2) G-P(sol) polarization free energy of solvation -83.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds