Wall clock time and date at job start Mon Mar 30 2020 04:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 S 1.81403 * 109.47241 * 2 1 4 4 O 1.42098 * 110.54320 * 73.26823 * 3 2 1 5 5 O 1.42100 * 110.54284 * 296.51941 * 3 2 1 6 6 N 1.65596 * 104.45046 * 184.89427 * 3 2 1 7 7 C 1.39676 * 120.00096 * 62.86762 * 6 3 2 8 8 C 1.39003 * 120.04071 * 74.92451 * 7 6 3 9 9 C 1.38154 * 120.05773 * 180.02562 * 8 7 6 10 10 C 1.38169 * 120.14338 * 359.72621 * 9 8 7 11 11 C 1.38915 * 120.07859 * 0.55318 * 10 9 8 12 12 O 1.35756 * 120.02754 * 179.72214 * 11 10 9 13 13 C 1.34830 * 116.99471 * 174.26443 * 12 11 10 14 14 H 1.08001 * 120.00402 * 5.07617 * 13 12 11 15 15 C 1.38648 * 120.00155 * 185.06851 * 13 12 11 16 16 N 1.31564 * 120.00036 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00400 * 180.02562 * 15 13 12 18 18 H 1.48507 * 109.46998 * 60.00592 * 17 15 13 19 19 H 1.48501 * 109.47043 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47338 * 300.00396 * 17 15 13 21 21 C 1.38752 * 120.03477 * 254.95234 * 7 6 3 22 22 H 1.09004 * 109.47405 * 299.99930 * 1 2 3 23 23 H 1.09002 * 109.47293 * 59.99886 * 1 2 3 24 24 H 1.09004 * 109.47385 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47324 * 240.00539 * 2 1 3 26 26 H 1.08996 * 109.47225 * 119.99669 * 2 1 3 27 27 H 0.96996 * 120.00005 * 242.85641 * 6 3 2 28 28 H 1.07994 * 119.97410 * 0.02562 * 8 7 6 29 29 H 1.08001 * 119.92602 * 179.97438 * 9 8 7 30 30 H 1.08008 * 119.95975 * 180.29866 * 10 9 8 31 31 H 0.96995 * 120.00620 * 180.02562 * 16 15 13 32 32 H 1.08001 * 120.07345 * 359.97438 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.9397 2.3081 1.2743 5 8 1.7407 2.3784 -1.1906 6 7 3.7787 1.5673 -0.1368 7 6 4.3368 0.9882 -1.2788 8 6 4.3770 1.7008 -2.4716 9 6 4.9284 1.1282 -3.6015 10 6 5.4464 -0.1516 -3.5485 11 6 5.4041 -0.8712 -2.3610 12 8 5.9083 -2.1306 -2.3116 13 6 5.9443 -2.7285 -1.1036 14 1 5.5073 -2.2392 -0.2456 15 6 6.5421 -3.9715 -0.9627 16 7 7.0748 -4.5674 -2.0077 17 14 6.5913 -4.8001 0.7107 18 1 5.2049 -5.0115 1.1993 19 1 7.2807 -6.1102 0.5942 20 1 7.3277 -3.9372 1.6689 21 6 4.8511 -0.2993 -1.2241 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5137 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 4.3542 1.8858 0.5761 28 1 3.9768 2.7030 -2.5151 29 1 4.9581 1.6837 -4.5273 30 1 5.8812 -0.5945 -4.4325 31 1 7.4927 -5.4372 -1.9094 32 1 4.8211 -0.8552 -0.2986 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036682865.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:10 Heat of formation + Delta-G solvation = -75.147103 kcal Electronic energy + Delta-G solvation = -18716.850437 eV Core-core repulsion = 15577.518764 eV Total energy + Delta-G solvation = -3139.331672 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.071 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.29259 -37.21598 -36.83538 -35.89538 -34.25060 -33.18457 -32.33375 -29.28254 -28.39960 -25.42328 -24.09081 -21.94939 -21.56742 -19.29395 -18.19088 -17.81448 -17.56201 -16.35620 -16.00326 -15.28960 -15.11582 -14.62840 -14.32096 -14.18427 -13.73421 -13.32830 -13.18085 -12.72107 -12.54760 -12.42329 -12.05678 -11.94270 -11.86535 -11.61979 -11.39037 -11.22266 -11.00993 -10.90157 -10.60472 -10.54363 -9.66538 -9.59813 -8.94290 -8.24836 -7.40449 -6.55626 -4.16170 0.27741 1.86925 2.20723 2.75858 3.04772 3.06445 3.09373 3.76910 3.86540 4.25576 4.35597 4.58563 4.81020 4.95614 5.11001 5.14574 5.47058 5.52706 5.64252 5.72171 5.81701 5.83599 5.99252 6.15885 6.47835 6.62160 6.90066 7.05770 7.11507 7.17762 7.29888 7.67147 7.87505 8.89241 9.56914 10.61791 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.019590 B = 0.006144 C = 0.005133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.944736 B = 4556.174361 C = 5453.946950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.630 4.630 3 S 2.609 3.391 4 O -0.966 6.966 5 O -0.949 6.949 6 N -1.062 6.062 7 C 0.155 3.845 8 C -0.192 4.192 9 C -0.071 4.071 10 C -0.180 4.180 11 C 0.156 3.844 12 O -0.173 6.173 13 C -0.397 4.397 14 H 0.091 0.909 15 C 0.042 3.958 16 N -0.859 5.859 17 Si 0.939 3.061 18 H -0.270 1.270 19 H -0.277 1.277 20 H -0.269 1.269 21 C -0.234 4.234 22 H 0.067 0.933 23 H 0.072 0.928 24 H 0.082 0.918 25 H 0.139 0.861 26 H 0.133 0.867 27 H 0.420 0.580 28 H 0.120 0.880 29 H 0.120 0.880 30 H 0.122 0.878 31 H 0.272 0.728 32 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.054 7.524 3.421 11.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.760 4.760 3 S 2.703 3.297 4 O -0.957 6.957 5 O -0.939 6.939 6 N -0.816 5.816 7 C 0.061 3.939 8 C -0.214 4.214 9 C -0.090 4.090 10 C -0.200 4.200 11 C 0.101 3.899 12 O -0.076 6.076 13 C -0.473 4.473 14 H 0.109 0.891 15 C -0.163 4.163 16 N -0.493 5.493 17 Si 0.764 3.236 18 H -0.195 1.195 19 H -0.202 1.202 20 H -0.194 1.194 21 C -0.256 4.256 22 H 0.086 0.914 23 H 0.091 0.909 24 H 0.101 0.899 25 H 0.157 0.843 26 H 0.151 0.849 27 H 0.257 0.743 28 H 0.138 0.862 29 H 0.138 0.862 30 H 0.140 0.860 31 H 0.082 0.918 32 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -8.447 7.899 3.162 11.989 hybrid contribution 0.538 -1.104 1.236 1.742 sum -7.908 6.795 4.398 11.316 Atomic orbital electron populations 1.21486 0.90637 1.05057 1.03095 1.30445 1.06895 1.26138 1.12530 1.05142 0.73028 0.77395 0.74115 1.93580 1.84499 1.74935 1.42649 1.93595 1.81328 1.70628 1.48341 1.53013 1.25433 1.76171 1.27030 1.16990 0.99685 0.91618 0.85589 1.20975 1.06872 1.00623 0.92883 1.20612 0.96740 0.94219 0.97460 1.20395 1.07329 0.95082 0.97189 1.19191 0.91974 0.85852 0.92889 1.84012 1.70022 1.20928 1.32663 1.21246 1.39421 1.01813 0.84805 0.89146 1.25281 0.95654 0.95968 0.99412 1.70017 1.34293 1.15562 1.29459 0.85812 0.78927 0.78689 0.80209 1.19492 1.20151 1.19430 1.21349 1.08076 0.95855 1.00317 0.91374 0.90865 0.89943 0.84260 0.84855 0.74285 0.86160 0.86168 0.86025 0.91812 0.84913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.92 37.15 0.37 -1.09 16 2 C -0.63 -7.47 6.69 37.15 0.25 -7.22 16 3 S 2.61 36.28 5.43 -107.50 -0.58 35.70 16 4 O -0.97 -15.16 18.08 -57.54 -1.04 -16.20 16 5 O -0.95 -15.74 16.93 -57.54 -0.97 -16.72 16 6 N -1.06 -15.21 5.60 32.40 0.18 -15.03 16 7 C 0.15 2.67 5.66 -83.81 -0.47 2.20 16 8 C -0.19 -3.29 9.24 -39.33 -0.36 -3.66 16 9 C -0.07 -1.20 10.03 -39.64 -0.40 -1.60 16 10 C -0.18 -3.51 9.99 -39.36 -0.39 -3.91 16 11 C 0.16 3.47 6.64 -39.14 -0.26 3.21 16 12 O -0.17 -4.63 9.76 0.03 0.00 -4.63 16 13 C -0.40 -10.44 9.49 30.88 0.29 -10.15 16 14 H 0.09 2.16 5.20 -52.49 -0.27 1.89 16 15 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 16 N -0.86 -24.18 13.67 55.48 0.76 -23.42 16 17 Si 0.94 19.57 29.55 -169.99 -5.02 14.54 16 18 H -0.27 -5.42 7.11 56.52 0.40 -5.01 16 19 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 20 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 21 C -0.23 -4.60 9.09 -39.20 -0.36 -4.95 16 22 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.14 1.75 8.12 -51.92 -0.42 1.33 16 26 H 0.13 1.38 8.14 -51.93 -0.42 0.96 16 27 H 0.42 5.13 8.92 -34.46 -0.31 4.83 16 28 H 0.12 1.95 7.78 -52.49 -0.41 1.54 16 29 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 30 H 0.12 2.26 8.06 -52.48 -0.42 1.84 16 31 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 32 H 0.13 2.56 5.64 -52.49 -0.30 2.27 16 LS Contribution 295.23 15.07 4.45 4.45 Total: -1.00 -32.42 295.23 -7.04 -39.46 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -3.38 Total: 8.00 kcal Atomic # 6 Polarization: -24.73 SS G_CDS: -1.43 Total: -26.16 kcal Atomic # 7 Polarization: -39.39 SS G_CDS: 0.94 Total: -38.45 kcal Atomic # 8 Polarization: -35.53 SS G_CDS: -2.01 Total: -37.55 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.02 Total: 14.54 kcal Atomic # 16 Polarization: 36.28 SS G_CDS: -0.58 Total: 35.70 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -32.42 -7.04 -39.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036682865.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.683 kcal (2) G-P(sol) polarization free energy of solvation -32.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds