Wall clock time and date at job start Mon Mar 30 2020 04:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 S 1.81403 * 109.47241 * 2 1 4 4 O 1.42098 * 110.54320 * 73.26823 * 3 2 1 5 5 O 1.42100 * 110.54284 * 296.51941 * 3 2 1 6 6 N 1.65596 * 104.45046 * 184.89427 * 3 2 1 7 7 C 1.39676 * 120.00096 * 62.86762 * 6 3 2 8 8 C 1.39003 * 120.04071 * 74.92451 * 7 6 3 9 9 C 1.38154 * 120.05773 * 180.02562 * 8 7 6 10 10 C 1.38169 * 120.14338 * 359.72621 * 9 8 7 11 11 C 1.38915 * 120.07859 * 0.55318 * 10 9 8 12 12 O 1.35756 * 120.02754 * 179.72214 * 11 10 9 13 13 C 1.34830 * 116.99471 * 174.26443 * 12 11 10 14 14 H 1.08001 * 120.00402 * 5.07617 * 13 12 11 15 15 C 1.38648 * 120.00155 * 185.06851 * 13 12 11 16 16 N 1.31564 * 120.00036 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00400 * 180.02562 * 15 13 12 18 18 H 1.48507 * 109.46998 * 60.00592 * 17 15 13 19 19 H 1.48501 * 109.47043 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47338 * 300.00396 * 17 15 13 21 21 C 1.38752 * 120.03477 * 254.95234 * 7 6 3 22 22 H 1.09004 * 109.47405 * 299.99930 * 1 2 3 23 23 H 1.09002 * 109.47293 * 59.99886 * 1 2 3 24 24 H 1.09004 * 109.47385 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47324 * 240.00539 * 2 1 3 26 26 H 1.08996 * 109.47225 * 119.99669 * 2 1 3 27 27 H 0.96996 * 120.00005 * 242.85641 * 6 3 2 28 28 H 1.07994 * 119.97410 * 0.02562 * 8 7 6 29 29 H 1.08001 * 119.92602 * 179.97438 * 9 8 7 30 30 H 1.08008 * 119.95975 * 180.29866 * 10 9 8 31 31 H 0.96995 * 120.00620 * 180.02562 * 16 15 13 32 32 H 1.08001 * 120.07345 * 359.97438 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.9397 2.3081 1.2743 5 8 1.7407 2.3784 -1.1906 6 7 3.7787 1.5673 -0.1368 7 6 4.3368 0.9882 -1.2788 8 6 4.3770 1.7008 -2.4716 9 6 4.9284 1.1282 -3.6015 10 6 5.4464 -0.1516 -3.5485 11 6 5.4041 -0.8712 -2.3610 12 8 5.9083 -2.1306 -2.3116 13 6 5.9443 -2.7285 -1.1036 14 1 5.5073 -2.2392 -0.2456 15 6 6.5421 -3.9715 -0.9627 16 7 7.0748 -4.5674 -2.0077 17 14 6.5913 -4.8001 0.7107 18 1 5.2049 -5.0115 1.1993 19 1 7.2807 -6.1102 0.5942 20 1 7.3277 -3.9372 1.6689 21 6 4.8511 -0.2993 -1.2241 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5137 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 4.3542 1.8858 0.5761 28 1 3.9768 2.7030 -2.5151 29 1 4.9581 1.6837 -4.5273 30 1 5.8812 -0.5945 -4.4325 31 1 7.4927 -5.4372 -1.9094 32 1 4.8211 -0.8552 -0.2986 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036682865.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:10 Heat of formation + Delta-G solvation = -99.035054 kcal Electronic energy + Delta-G solvation = -18717.886296 eV Core-core repulsion = 15577.518764 eV Total energy + Delta-G solvation = -3140.367532 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.071 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.89533 -38.73947 -38.14393 -37.11194 -35.64647 -34.19770 -34.07358 -30.82660 -29.90031 -27.28314 -24.99537 -23.44943 -23.11216 -20.53184 -19.83350 -19.28495 -18.86632 -17.61294 -17.28387 -16.76057 -16.53266 -16.21116 -15.83872 -15.51105 -15.24435 -14.66123 -14.42846 -14.17147 -13.74676 -13.59839 -13.43624 -13.28530 -13.17861 -12.95255 -12.69902 -12.55831 -12.46027 -12.39506 -12.16685 -11.67465 -11.36884 -10.94607 -10.76233 -9.70249 -9.05796 -8.45886 -6.14470 -0.85031 0.39580 0.66977 1.36947 1.46267 1.51987 1.59381 2.17604 2.66527 2.77053 3.11361 3.18366 3.49783 3.67338 3.85865 4.12661 4.19864 4.33775 4.36644 4.48750 4.65888 4.68611 4.84140 5.03345 5.06502 5.11218 5.22352 5.57900 5.60534 5.64488 5.91344 6.01560 6.22713 6.98827 7.77600 8.76464 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.019590 B = 0.006144 C = 0.005133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.944736 B = 4556.174361 C = 5453.946950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.621 4.621 3 S 2.621 3.379 4 O -0.982 6.982 5 O -0.976 6.976 6 N -1.059 6.059 7 C 0.164 3.836 8 C -0.184 4.184 9 C -0.059 4.059 10 C -0.190 4.190 11 C 0.123 3.877 12 O -0.225 6.225 13 C -0.414 4.414 14 H 0.106 0.894 15 C -0.019 4.019 16 N -0.918 5.918 17 Si 1.011 2.989 18 H -0.255 1.255 19 H -0.275 1.275 20 H -0.258 1.258 21 C -0.233 4.233 22 H 0.081 0.919 23 H 0.076 0.924 24 H 0.098 0.902 25 H 0.133 0.867 26 H 0.151 0.849 27 H 0.430 0.570 28 H 0.139 0.861 29 H 0.160 0.840 30 H 0.123 0.877 31 H 0.272 0.728 32 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.378 8.823 4.603 13.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.753 4.753 3 S 2.717 3.283 4 O -0.973 6.973 5 O -0.966 6.966 6 N -0.814 5.814 7 C 0.070 3.930 8 C -0.205 4.205 9 C -0.077 4.077 10 C -0.209 4.209 11 C 0.071 3.929 12 O -0.131 6.131 13 C -0.490 4.490 14 H 0.123 0.877 15 C -0.217 4.217 16 N -0.556 5.556 17 Si 0.831 3.169 18 H -0.179 1.179 19 H -0.200 1.200 20 H -0.183 1.183 21 C -0.255 4.255 22 H 0.100 0.900 23 H 0.095 0.905 24 H 0.117 0.883 25 H 0.151 0.849 26 H 0.169 0.831 27 H 0.269 0.731 28 H 0.157 0.843 29 H 0.178 0.822 30 H 0.141 0.859 31 H 0.081 0.919 32 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.782 9.289 4.350 14.174 hybrid contribution 0.805 -1.223 0.791 1.664 sum -8.978 8.066 5.142 13.118 Atomic orbital electron populations 1.21672 0.89132 1.06463 1.04083 1.30367 1.08325 1.23434 1.13188 1.04749 0.72396 0.78031 0.73093 1.93560 1.84514 1.76063 1.43133 1.93556 1.81551 1.72267 1.49256 1.52960 1.25920 1.75937 1.26604 1.16946 0.98704 0.90683 0.86672 1.21381 1.05227 1.01183 0.92728 1.21019 0.94687 0.92983 0.99019 1.20654 1.07648 0.96078 0.96547 1.19716 0.92938 0.85388 0.94847 1.83986 1.72702 1.23194 1.33213 1.21774 1.39462 1.02303 0.85431 0.87679 1.26503 0.95150 0.96527 1.03559 1.70166 1.36880 1.16347 1.32162 0.84744 0.79641 0.77414 0.75104 1.17916 1.19999 1.18262 1.21390 1.07890 0.96712 0.99539 0.89959 0.90540 0.88326 0.84852 0.83077 0.73073 0.84345 0.82206 0.85859 0.91866 0.84947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 9.92 71.98 0.71 -1.99 16 2 C -0.62 -13.18 6.69 71.98 0.48 -12.70 16 3 S 2.62 67.09 5.43 -56.49 -0.31 66.78 16 4 O -0.98 -28.69 18.08 -127.65 -2.31 -31.00 16 5 O -0.98 -30.26 16.93 -127.65 -2.16 -32.42 16 6 N -1.06 -27.97 5.60 -51.41 -0.29 -28.26 16 7 C 0.16 5.33 5.66 38.20 0.22 5.55 16 8 C -0.18 -5.77 9.24 22.43 0.21 -5.56 16 9 C -0.06 -1.81 10.03 22.23 0.22 -1.59 16 10 C -0.19 -7.30 9.99 22.42 0.22 -7.07 16 11 C 0.12 5.54 6.64 22.56 0.15 5.69 16 12 O -0.22 -12.52 9.76 -22.80 -0.22 -12.74 16 13 C -0.41 -22.36 9.49 67.92 0.64 -21.71 16 14 H 0.11 5.07 5.20 -2.91 -0.02 5.06 16 15 C -0.02 -1.03 5.49 84.83 0.47 -0.57 16 16 N -0.92 -53.89 13.67 21.61 0.30 -53.60 16 17 Si 1.01 40.35 29.55 68.60 2.03 42.38 16 18 H -0.25 -9.42 7.11 99.48 0.71 -8.72 16 19 H -0.28 -10.75 7.11 99.48 0.71 -10.04 16 20 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 21 C -0.23 -9.02 9.09 22.52 0.20 -8.82 16 22 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 23 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 25 H 0.13 3.09 8.12 -2.39 -0.02 3.07 16 26 H 0.15 2.69 8.14 -2.39 -0.02 2.67 16 27 H 0.43 9.57 8.92 -96.75 -0.86 8.71 16 28 H 0.14 3.95 7.78 -2.91 -0.02 3.92 16 29 H 0.16 3.69 8.06 -2.91 -0.02 3.66 16 30 H 0.12 4.61 8.06 -2.91 -0.02 4.59 16 31 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 32 H 0.13 5.05 5.64 -2.91 -0.02 5.03 16 Total: -1.00 -71.64 295.23 0.86 -70.79 By element: Atomic # 1 Polarization: 26.56 SS G_CDS: 0.29 Total: 26.85 kcal Atomic # 6 Polarization: -52.31 SS G_CDS: 3.53 Total: -48.78 kcal Atomic # 7 Polarization: -81.87 SS G_CDS: 0.01 Total: -81.86 kcal Atomic # 8 Polarization: -71.47 SS G_CDS: -4.69 Total: -76.16 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 2.03 Total: 42.38 kcal Atomic # 16 Polarization: 67.09 SS G_CDS: -0.31 Total: 66.78 kcal Total: -71.64 0.86 -70.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036682865.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.247 kcal (2) G-P(sol) polarization free energy of solvation -71.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds