Wall clock time and date at job start Mon Mar 30 2020 05:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42904 * 114.00333 * 2 1 4 4 C 1.52998 * 109.46872 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47100 * 65.00478 * 4 3 2 6 6 C 1.46500 * 119.99861 * 269.99490 * 5 4 3 7 7 C 1.50694 * 109.47076 * 270.00097 * 6 5 4 8 8 H 1.08004 * 120.00250 * 359.97438 * 7 6 5 9 9 C 1.37880 * 120.00097 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99758 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00274 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.46901 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47267 * 119.99717 * 11 9 7 14 14 H 1.48501 * 109.47172 * 240.00386 * 11 9 7 15 15 C 1.38538 * 119.99896 * 89.99470 * 5 4 3 16 16 C 1.39666 * 120.51914 * 184.99915 * 15 5 4 17 17 C 1.38084 * 118.36062 * 179.72312 * 16 15 5 18 18 N 1.32567 * 119.21352 * 0.25578 * 17 16 15 19 19 C 1.31890 * 121.00270 * 359.97438 * 18 17 16 20 20 Cl 1.73598 * 119.10218 * 180.02562 * 19 18 17 21 21 N 1.31899 * 121.79693 * 359.97438 * 19 18 17 22 22 H 1.08994 * 109.47075 * 300.00075 * 1 2 3 23 23 H 1.09006 * 109.46590 * 59.99830 * 1 2 3 24 24 H 1.08993 * 109.47298 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46290 * 59.99981 * 3 2 1 26 26 H 1.08996 * 109.46903 * 300.00197 * 3 2 1 27 27 H 1.08992 * 109.47520 * 304.99790 * 4 3 2 28 28 H 1.09003 * 109.46236 * 184.99955 * 4 3 2 29 29 H 1.09003 * 109.46783 * 30.00295 * 6 5 4 30 30 H 1.09003 * 109.46967 * 150.00033 * 6 5 4 31 31 H 0.97002 * 120.00122 * 180.02562 * 10 9 7 32 32 H 1.08002 * 120.82312 * 0.02562 * 16 15 5 33 33 H 1.07997 * 120.39030 * 180.23015 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.1062 -0.8927 -1.3404 7 6 5.5016 -1.2983 -0.9413 8 1 6.2203 -0.5463 -0.6506 9 6 5.8612 -2.6293 -0.9484 10 7 4.9863 -3.5450 -1.3029 11 14 7.5911 -3.1321 -0.4544 12 1 8.3766 -1.9221 -0.1021 13 1 7.5267 -4.0400 0.7189 14 1 8.2454 -3.8336 -1.5880 15 6 4.2713 1.3543 -2.3498 16 6 4.5921 0.7710 -3.5776 17 6 4.8726 1.6010 -4.6449 18 7 4.8339 2.9146 -4.4705 19 6 4.5320 3.4355 -3.2971 20 17 4.4951 5.1625 -3.1243 21 7 4.2565 2.6802 -2.2515 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.6886 1.8463 0.8900 26 1 1.6887 1.8464 -0.8899 27 1 3.8508 0.5684 0.8426 28 1 3.9785 2.1764 0.0902 29 1 3.3857 -1.3632 -0.6714 30 1 3.9138 -1.2123 -2.3646 31 1 5.2391 -4.4814 -1.3075 32 1 4.6154 -0.3029 -3.6908 33 1 5.1209 1.1850 -5.6101 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070846720.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:56 Heat of formation + Delta-G solvation = -11.642047 kcal Electronic energy + Delta-G solvation = -18724.506340 eV Core-core repulsion = 15618.177499 eV Total energy + Delta-G solvation = -3106.328842 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.85928 -39.23853 -38.01028 -37.50749 -35.00789 -33.97472 -32.59686 -30.89042 -28.74190 -27.14446 -25.58666 -25.17829 -23.97449 -22.25345 -18.96281 -18.66446 -18.52490 -17.34301 -16.99823 -16.63570 -16.56851 -16.29015 -15.92394 -15.53651 -15.32601 -14.63632 -14.47715 -13.64759 -13.58841 -13.21655 -12.83821 -12.80475 -12.74432 -12.62758 -12.43996 -12.22878 -12.17900 -12.00032 -11.64128 -11.54513 -10.66017 -10.60898 -10.59168 -10.25208 -8.82433 -8.16991 -6.36170 -0.01540 0.37149 0.43351 1.38801 1.41701 1.52160 2.04753 2.40301 2.80701 2.94006 3.08996 3.33183 3.78382 3.96203 4.13873 4.21157 4.37750 4.40964 4.50907 4.52144 4.57977 4.70534 4.82642 4.92248 5.08764 5.26372 5.27783 5.59921 5.78862 6.04059 6.25191 6.34547 6.51349 6.75972 7.08501 7.35120 8.84435 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.014028 B = 0.006804 C = 0.005159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.558318 B = 4114.038305 C = 5426.191475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.412 6.412 3 C 0.057 3.943 4 C 0.123 3.877 5 N -0.567 5.567 6 C 0.273 3.727 7 C -0.547 4.547 8 H 0.049 0.951 9 C 0.022 3.978 10 N -0.919 5.919 11 Si 0.958 3.042 12 H -0.274 1.274 13 H -0.277 1.277 14 H -0.276 1.276 15 C 0.443 3.557 16 C -0.292 4.292 17 C 0.189 3.811 18 N -0.572 5.572 19 C 0.390 3.610 20 Cl 0.023 6.977 21 N -0.587 5.587 22 H 0.058 0.942 23 H 0.040 0.960 24 H 0.088 0.912 25 H 0.083 0.917 26 H 0.040 0.960 27 H 0.077 0.923 28 H 0.103 0.897 29 H 0.033 0.967 30 H 0.022 0.978 31 H 0.268 0.732 32 H 0.146 0.854 33 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.232 10.442 -1.248 11.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.331 6.331 3 C -0.020 4.020 4 C 0.000 4.000 5 N -0.274 5.274 6 C 0.152 3.848 7 C -0.586 4.586 8 H 0.067 0.933 9 C -0.178 4.178 10 N -0.558 5.558 11 Si 0.783 3.217 12 H -0.198 1.198 13 H -0.202 1.202 14 H -0.201 1.201 15 C 0.199 3.801 16 C -0.320 4.320 17 C 0.031 3.969 18 N -0.296 5.296 19 C 0.094 3.906 20 Cl 0.051 6.949 21 N -0.317 5.317 22 H 0.077 0.923 23 H 0.059 0.941 24 H 0.106 0.894 25 H 0.101 0.899 26 H 0.058 0.942 27 H 0.095 0.905 28 H 0.121 0.879 29 H 0.051 0.949 30 H 0.040 0.960 31 H 0.077 0.923 32 H 0.163 0.837 33 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -5.229 11.002 -0.961 12.219 hybrid contribution 0.588 -1.097 0.293 1.279 sum -4.641 9.904 -0.669 10.958 Atomic orbital electron populations 1.22858 0.80007 1.03304 1.00578 1.88006 1.21163 1.28469 1.95481 1.22962 0.93579 0.84640 1.00860 1.21576 0.92800 0.99632 0.85991 1.47064 1.64735 1.06680 1.08878 1.19040 0.95731 0.72835 0.97169 1.21720 0.97959 0.92476 1.46427 0.93296 1.25636 1.01059 0.96265 0.94859 1.70029 1.36029 1.01561 1.48172 0.85510 0.79865 0.78116 0.78175 1.19831 1.20242 1.20116 1.18637 0.86788 0.86595 0.88057 1.22476 1.12091 1.03552 0.93888 1.23288 0.88023 0.86244 0.99381 1.67919 1.22793 1.15121 1.23796 1.22701 0.92730 0.89414 0.85767 1.98383 1.96278 1.02869 1.97403 1.67213 1.26780 1.04428 1.33305 0.92309 0.94106 0.89367 0.89916 0.94170 0.90483 0.87915 0.94942 0.95993 0.92272 0.83669 0.77559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 11.01 113.37 1.25 1.97 16 2 O -0.41 -14.33 9.53 -148.98 -1.42 -15.75 16 3 C 0.06 1.76 6.28 71.98 0.45 2.21 16 4 C 0.12 4.38 5.89 86.38 0.51 4.89 16 5 N -0.57 -23.72 2.52 -707.68 -1.78 -25.50 16 6 C 0.27 13.37 4.85 85.63 0.42 13.78 16 7 C -0.55 -29.05 9.39 25.60 0.24 -28.81 16 8 H 0.05 2.66 7.81 -2.91 -0.02 2.64 16 9 C 0.02 1.18 5.46 84.66 0.46 1.65 16 10 N -0.92 -51.25 13.29 21.45 0.28 -50.96 16 11 Si 0.96 42.38 29.54 68.60 2.03 44.41 16 12 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 13 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 14 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 15 C 0.44 17.76 7.39 133.18 0.98 18.74 16 16 C -0.29 -10.89 9.33 22.58 0.21 -10.68 16 17 C 0.19 5.89 11.29 84.55 0.95 6.85 16 18 N -0.57 -19.21 10.40 -191.00 -1.99 -21.19 16 19 C 0.39 13.49 8.18 180.82 1.48 14.96 16 20 Cl 0.02 0.64 29.27 -2.72 -0.08 0.56 16 21 N -0.59 -21.93 9.20 -188.30 -1.73 -23.66 16 22 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 23 H 0.04 0.96 8.14 -2.38 -0.02 0.94 16 24 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 25 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.08 2.87 8.07 -2.39 -0.02 2.85 16 28 H 0.10 3.40 7.33 -2.39 -0.02 3.39 16 29 H 0.03 1.74 7.11 -2.39 -0.02 1.72 16 30 H 0.02 1.14 6.05 -2.39 -0.01 1.12 16 31 H 0.27 14.09 8.31 -92.71 -0.77 13.31 16 32 H 0.15 5.75 6.16 -2.91 -0.02 5.73 16 33 H 0.21 4.59 8.06 -2.91 -0.02 4.56 16 Total: -1.00 -60.91 303.72 3.38 -57.53 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: 1.12 Total: 9.01 kcal Atomic # 6 Polarization: 18.61 SS G_CDS: 6.95 Total: 25.56 kcal Atomic # 7 Polarization: -116.10 SS G_CDS: -5.22 Total: -121.32 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: -1.42 Total: -15.75 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Atomic # 17 Polarization: 0.64 SS G_CDS: -0.08 Total: 0.56 kcal Total: -60.91 3.38 -57.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070846720.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.885 kcal (2) G-P(sol) polarization free energy of solvation -60.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds