Wall clock time and date at job start Mon Mar 30 2020 05:07:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.50703 * 109.46964 * 2 1
4 4 N 1.29500 * 126.05351 * 90.02722 * 3 2 1
5 5 N 1.26102 * 117.92927 * 179.97438 * 4 3 2
6 6 C 1.30404 * 117.60136 * 0.02562 * 5 4 3
7 7 N 1.38287 * 126.16168 * 179.97438 * 6 5 4
8 8 C 1.36882 * 120.00299 * 174.82340 * 7 6 5
9 9 H 1.08000 * 119.99923 * 321.03049 * 8 7 6
10 10 C 1.38746 * 119.99902 * 141.01979 * 8 7 6
11 11 N 1.31604 * 120.00398 * 339.68945 * 10 8 7
12 12 Si 1.86805 * 119.99520 * 159.68248 * 10 8 7
13 13 H 1.48494 * 109.47335 * 90.00607 * 12 10 8
14 14 H 1.48507 * 109.46718 * 210.00377 * 12 10 8
15 15 H 1.48503 * 109.47272 * 330.00084 * 12 10 8
16 16 C 1.46503 * 119.99665 * 354.82424 * 7 6 5
17 17 C 1.53000 * 109.47365 * 90.00221 * 16 7 6
18 18 C 1.50694 * 109.47291 * 179.97438 * 17 16 7
19 19 O 1.20821 * 119.99943 * 0.02562 * 18 17 16
20 20 O 1.34229 * 120.00032 * 179.97438 * 18 17 16
21 21 S 1.76478 * 126.05517 * 269.96902 * 3 2 1
22 22 H 1.08995 * 109.47033 * 179.97438 * 1 2 3
23 23 H 1.09000 * 109.46813 * 299.99882 * 1 2 3
24 24 H 1.08998 * 109.46979 * 59.99850 * 1 2 3
25 25 H 1.09000 * 109.46813 * 240.00118 * 2 1 3
26 26 H 1.08998 * 109.46979 * 120.00150 * 2 1 3
27 27 H 0.96996 * 120.00093 * 175.02579 * 11 10 8
28 28 H 1.09008 * 109.47111 * 210.00105 * 16 7 6
29 29 H 1.09002 * 109.47454 * 329.99542 * 16 7 6
30 30 H 1.09002 * 109.46513 * 299.99893 * 17 16 7
31 31 H 1.08999 * 109.46935 * 59.99498 * 17 16 7
32 32 H 0.96699 * 117.00145 * 180.02562 * 20 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0324 1.4209 0.0000
4 7 2.2869 2.1393 1.0470
5 7 2.7033 3.3161 0.8688
6 6 2.8477 3.7263 -0.3607
7 7 3.2890 4.9752 -0.7577
8 6 3.4948 5.2384 -2.0851
9 1 3.9285 4.4837 -2.7243
10 6 3.1459 6.4747 -2.6094
11 7 2.2782 7.2363 -1.9777
12 14 3.9081 7.0582 -4.2120
13 1 3.0651 6.6151 -5.3513
14 1 3.9950 8.5407 -4.2078
15 1 5.2701 6.4829 -4.3508
16 6 3.5363 6.0167 0.2425
17 6 4.9894 5.9358 0.7146
18 6 5.2440 7.0075 1.7430
19 8 4.3544 7.7587 2.0656
20 8 6.4588 7.1269 2.3013
21 16 2.3793 2.3999 -1.4267
22 1 -0.3633 -1.0276 -0.0005
23 1 -0.3633 0.5138 0.8900
24 1 -0.3633 0.5138 -0.8900
25 1 1.8933 -0.5138 -0.8900
26 1 1.8933 -0.5138 0.8900
27 1 2.0885 8.1295 -2.3049
28 1 3.3519 6.9960 -0.1994
29 1 2.8695 5.8703 1.0922
30 1 5.1737 4.9565 1.1565
31 1 5.6562 6.0823 -0.1351
32 1 6.5739 7.8290 2.9562
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000071672944.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:07:21
Heat of formation + Delta-G solvation = -37.503993 kcal
Electronic energy + Delta-G solvation = -18474.702165 eV
Core-core repulsion = 15369.295572 eV
Total energy + Delta-G solvation = -3105.406593 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 271.078 amu
Computer time = 0.40 seconds
Orbital eigenvalues (eV)
-39.95428 -39.50283 -37.02988 -35.80576 -33.61872 -32.49279 -31.03682 -28.49536
-25.81370 -25.17036 -23.39175 -22.03110 -20.67696 -18.87610 -18.24211 -17.60458
-17.03646 -16.26804 -16.00986 -15.56446 -14.89681 -14.44226 -14.12406 -13.72197
-13.37049 -13.00558 -12.80854 -12.53853 -12.20161 -12.01081 -11.64367 -11.41429
-11.29470 -11.24581 -11.16015 -10.84090 -10.66933 -10.41586 -10.24739 -9.88988
-9.21703 -8.98026 -8.83249 -8.40930 -7.23740 -6.68754 -4.45474 1.84004
2.01961 2.54941 2.64331 2.94305 3.00723 3.05033 3.31342 3.75851
3.89472 4.50174 4.55718 5.17010 5.39371 5.43571 5.60695 5.65563
5.77656 5.88272 6.07943 6.11024 6.13691 6.34040 6.48442 6.49785
6.71954 6.80167 6.95590 7.04284 7.58113 8.08352 8.19570 8.66595
8.98063 10.03708 10.18120
Molecular weight = 271.08amu
Principal moments of inertia in cm(-1)
A = 0.014286 B = 0.007329 C = 0.005231
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1959.439447 B = 3819.687799 C = 5351.095230
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.016 4.016
3 C -0.087 4.087
4 N -0.213 5.213
5 N -0.406 5.406
6 C 0.283 3.717
7 N -0.362 5.362
8 C -0.334 4.334
9 H 0.100 0.900
10 C 0.050 3.950
11 N -0.833 5.833
12 Si 0.926 3.074
13 H -0.270 1.270
14 H -0.276 1.276
15 H -0.263 1.263
16 C 0.135 3.865
17 C -0.126 4.126
18 C 0.486 3.514
19 O -0.514 6.514
20 O -0.522 6.522
21 S -0.020 6.020
22 H 0.055 0.945
23 H 0.057 0.943
24 H 0.054 0.946
25 H 0.071 0.929
26 H 0.079 0.921
27 H 0.280 0.720
28 H 0.119 0.881
29 H 0.076 0.924
30 H 0.102 0.898
31 H 0.108 0.892
32 H 0.403 0.597
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.833 -4.050 0.551 5.603
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.058 4.058
3 C -0.373 4.373
4 N -0.049 5.049
5 N -0.262 5.262
6 C -0.085 4.085
7 N -0.057 5.057
8 C -0.464 4.464
9 H 0.118 0.882
10 C -0.162 4.162
11 N -0.465 5.465
12 Si 0.750 3.250
13 H -0.195 1.195
14 H -0.201 1.201
15 H -0.187 1.187
16 C 0.009 3.991
17 C -0.166 4.166
18 C 0.328 3.672
19 O -0.401 6.401
20 O -0.334 6.334
21 S 0.217 5.783
22 H 0.074 0.926
23 H 0.076 0.924
24 H 0.073 0.927
25 H 0.089 0.911
26 H 0.098 0.902
27 H 0.091 0.909
28 H 0.137 0.863
29 H 0.094 0.906
30 H 0.121 0.879
31 H 0.126 0.874
32 H 0.261 0.739
Dipole moment (debyes) X Y Z Total
from point charges 3.480 -3.638 0.484 5.058
hybrid contribution 0.406 0.930 -0.364 1.078
sum 3.886 -2.708 0.119 4.738
Atomic orbital electron populations
1.21767 0.95034 1.01074 1.02467 1.19654 0.95438 0.88230 1.02433
1.28331 1.16921 1.02626 0.89390 1.70420 1.08100 0.98661 1.27732
1.71325 1.31825 1.07966 1.15106 1.27109 0.96798 0.94220 0.90412
1.41892 1.52826 1.04659 1.06301 1.19656 1.41082 1.02299 0.83364
0.88203 1.25582 0.93570 0.97239 0.99804 1.70039 1.25286 1.10119
1.41095 0.85941 0.79985 0.78350 0.80719 1.19489 1.20076 1.18684
1.21421 0.91336 0.94633 0.91687 1.21812 1.01843 0.96546 0.96371
1.23568 0.79040 0.84163 0.80416 1.90716 1.44989 1.43649 1.60766
1.84575 1.35665 1.56973 1.56186 1.85289 1.70154 1.09925 1.12957
0.92587 0.92392 0.92667 0.91060 0.90225 0.90925 0.86326 0.90588
0.87935 0.87428 0.73889
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 20.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.94 9.90 37.16 0.37 -1.58 16
2 C -0.02 -0.23 6.56 -27.88 -0.18 -0.42 16
3 C -0.09 -1.73 7.05 -13.26 -0.09 -1.82 16
4 N -0.21 -4.86 11.56 33.59 0.39 -4.47 16
5 N -0.41 -9.89 10.99 30.94 0.34 -9.55 16
6 C 0.28 6.78 7.96 -87.41 -0.70 6.08 16
7 N -0.36 -8.60 2.59 -115.38 -0.30 -8.90 16
8 C -0.33 -7.93 8.84 -15.11 -0.13 -8.06 16
9 H 0.10 2.32 7.76 -52.49 -0.41 1.91 16
10 C 0.05 1.15 4.97 -17.46 -0.09 1.07 16
11 N -0.83 -20.62 11.50 55.49 0.64 -19.98 16
12 Si 0.93 17.89 29.60 -169.99 -5.03 12.86 16
13 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16
14 H -0.28 -5.29 7.11 56.52 0.40 -4.89 16
15 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16
16 C 0.14 3.03 4.41 -4.04 -0.02 3.01 16
17 C -0.13 -2.34 6.13 -27.89 -0.17 -2.51 16
18 C 0.49 8.42 8.33 36.00 0.30 8.72 16
19 O -0.51 -10.39 16.74 -18.75 -0.31 -10.71 16
20 O -0.52 -7.05 13.42 -39.25 -0.53 -7.57 16
21 S -0.02 -0.42 22.70 -107.50 -2.44 -2.86 16
22 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16
23 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16
24 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16
25 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16
26 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16
27 H 0.28 6.48 8.32 -40.82 -0.34 6.15 16
28 H 0.12 2.86 5.54 -51.92 -0.29 2.57 16
29 H 0.08 1.82 7.69 -51.93 -0.40 1.42 16
30 H 0.10 1.89 8.14 -51.93 -0.42 1.47 16
31 H 0.11 1.87 8.14 -51.93 -0.42 1.45 16
32 H 0.40 3.50 9.10 45.56 0.41 3.91 16
LS Contribution 299.97 15.07 4.52 4.52
Total: -1.00 -29.24 299.97 -6.21 -35.46
By element:
Atomic # 1 Polarization: 9.50 SS G_CDS: -2.77 Total: 6.72 kcal
Atomic # 6 Polarization: 5.20 SS G_CDS: -0.71 Total: 4.49 kcal
Atomic # 7 Polarization: -43.97 SS G_CDS: 1.07 Total: -42.90 kcal
Atomic # 8 Polarization: -17.44 SS G_CDS: -0.84 Total: -18.28 kcal
Atomic # 14 Polarization: 17.89 SS G_CDS: -5.03 Total: 12.86 kcal
Atomic # 16 Polarization: -0.42 SS G_CDS: -2.44 Total: -2.86 kcal
Total LS contribution 4.52 Total: 4.52 kcal
Total: -29.24 -6.21 -35.46 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000071672944.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -2.049 kcal
(2) G-P(sol) polarization free energy of solvation -29.242 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.291 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.213 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.455 kcal
(6) G-S(sol) free energy of system = (1) + (5) -37.504 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.40 seconds