Wall clock time and date at job start Mon Mar 30 2020 05:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50703 * 109.46964 * 2 1 4 4 N 1.29500 * 126.05351 * 90.02722 * 3 2 1 5 5 N 1.26102 * 117.92927 * 179.97438 * 4 3 2 6 6 C 1.30404 * 117.60136 * 0.02562 * 5 4 3 7 7 N 1.38287 * 126.16168 * 179.97438 * 6 5 4 8 8 C 1.36882 * 120.00299 * 174.82340 * 7 6 5 9 9 H 1.08000 * 119.99923 * 321.03049 * 8 7 6 10 10 C 1.38746 * 119.99902 * 141.01979 * 8 7 6 11 11 N 1.31604 * 120.00398 * 339.68945 * 10 8 7 12 12 Si 1.86805 * 119.99520 * 159.68248 * 10 8 7 13 13 H 1.48494 * 109.47335 * 90.00607 * 12 10 8 14 14 H 1.48507 * 109.46718 * 210.00377 * 12 10 8 15 15 H 1.48503 * 109.47272 * 330.00084 * 12 10 8 16 16 C 1.46503 * 119.99665 * 354.82424 * 7 6 5 17 17 C 1.53000 * 109.47365 * 90.00221 * 16 7 6 18 18 C 1.50694 * 109.47291 * 179.97438 * 17 16 7 19 19 O 1.20821 * 119.99943 * 0.02562 * 18 17 16 20 20 O 1.34229 * 120.00032 * 179.97438 * 18 17 16 21 21 S 1.76478 * 126.05517 * 269.96902 * 3 2 1 22 22 H 1.08995 * 109.47033 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46813 * 299.99882 * 1 2 3 24 24 H 1.08998 * 109.46979 * 59.99850 * 1 2 3 25 25 H 1.09000 * 109.46813 * 240.00118 * 2 1 3 26 26 H 1.08998 * 109.46979 * 120.00150 * 2 1 3 27 27 H 0.96996 * 120.00093 * 175.02579 * 11 10 8 28 28 H 1.09008 * 109.47111 * 210.00105 * 16 7 6 29 29 H 1.09002 * 109.47454 * 329.99542 * 16 7 6 30 30 H 1.09002 * 109.46513 * 299.99893 * 17 16 7 31 31 H 1.08999 * 109.46935 * 59.99498 * 17 16 7 32 32 H 0.96699 * 117.00145 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2869 2.1393 1.0470 5 7 2.7033 3.3161 0.8688 6 6 2.8477 3.7263 -0.3607 7 7 3.2890 4.9752 -0.7577 8 6 3.4948 5.2384 -2.0851 9 1 3.9285 4.4837 -2.7243 10 6 3.1459 6.4747 -2.6094 11 7 2.2782 7.2363 -1.9777 12 14 3.9081 7.0582 -4.2120 13 1 3.0651 6.6151 -5.3513 14 1 3.9950 8.5407 -4.2078 15 1 5.2701 6.4829 -4.3508 16 6 3.5363 6.0167 0.2425 17 6 4.9894 5.9358 0.7146 18 6 5.2440 7.0075 1.7430 19 8 4.3544 7.7587 2.0656 20 8 6.4588 7.1269 2.3013 21 16 2.3793 2.3999 -1.4267 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.0885 8.1295 -2.3049 28 1 3.3519 6.9960 -0.1994 29 1 2.8695 5.8703 1.0922 30 1 5.1737 4.9565 1.1565 31 1 5.6562 6.0823 -0.1351 32 1 6.5739 7.8290 2.9562 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071672944.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:21 Heat of formation + Delta-G solvation = -37.503993 kcal Electronic energy + Delta-G solvation = -18474.702165 eV Core-core repulsion = 15369.295572 eV Total energy + Delta-G solvation = -3105.406593 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.95428 -39.50283 -37.02988 -35.80576 -33.61872 -32.49279 -31.03682 -28.49536 -25.81370 -25.17036 -23.39175 -22.03110 -20.67696 -18.87610 -18.24211 -17.60458 -17.03646 -16.26804 -16.00986 -15.56446 -14.89681 -14.44226 -14.12406 -13.72197 -13.37049 -13.00558 -12.80854 -12.53853 -12.20161 -12.01081 -11.64367 -11.41429 -11.29470 -11.24581 -11.16015 -10.84090 -10.66933 -10.41586 -10.24739 -9.88988 -9.21703 -8.98026 -8.83249 -8.40930 -7.23740 -6.68754 -4.45474 1.84004 2.01961 2.54941 2.64331 2.94305 3.00723 3.05033 3.31342 3.75851 3.89472 4.50174 4.55718 5.17010 5.39371 5.43571 5.60695 5.65563 5.77656 5.88272 6.07943 6.11024 6.13691 6.34040 6.48442 6.49785 6.71954 6.80167 6.95590 7.04284 7.58113 8.08352 8.19570 8.66595 8.98063 10.03708 10.18120 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.014286 B = 0.007329 C = 0.005231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.439447 B = 3819.687799 C = 5351.095230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.016 4.016 3 C -0.087 4.087 4 N -0.213 5.213 5 N -0.406 5.406 6 C 0.283 3.717 7 N -0.362 5.362 8 C -0.334 4.334 9 H 0.100 0.900 10 C 0.050 3.950 11 N -0.833 5.833 12 Si 0.926 3.074 13 H -0.270 1.270 14 H -0.276 1.276 15 H -0.263 1.263 16 C 0.135 3.865 17 C -0.126 4.126 18 C 0.486 3.514 19 O -0.514 6.514 20 O -0.522 6.522 21 S -0.020 6.020 22 H 0.055 0.945 23 H 0.057 0.943 24 H 0.054 0.946 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.280 0.720 28 H 0.119 0.881 29 H 0.076 0.924 30 H 0.102 0.898 31 H 0.108 0.892 32 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.833 -4.050 0.551 5.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.058 4.058 3 C -0.373 4.373 4 N -0.049 5.049 5 N -0.262 5.262 6 C -0.085 4.085 7 N -0.057 5.057 8 C -0.464 4.464 9 H 0.118 0.882 10 C -0.162 4.162 11 N -0.465 5.465 12 Si 0.750 3.250 13 H -0.195 1.195 14 H -0.201 1.201 15 H -0.187 1.187 16 C 0.009 3.991 17 C -0.166 4.166 18 C 0.328 3.672 19 O -0.401 6.401 20 O -0.334 6.334 21 S 0.217 5.783 22 H 0.074 0.926 23 H 0.076 0.924 24 H 0.073 0.927 25 H 0.089 0.911 26 H 0.098 0.902 27 H 0.091 0.909 28 H 0.137 0.863 29 H 0.094 0.906 30 H 0.121 0.879 31 H 0.126 0.874 32 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 3.480 -3.638 0.484 5.058 hybrid contribution 0.406 0.930 -0.364 1.078 sum 3.886 -2.708 0.119 4.738 Atomic orbital electron populations 1.21767 0.95034 1.01074 1.02467 1.19654 0.95438 0.88230 1.02433 1.28331 1.16921 1.02626 0.89390 1.70420 1.08100 0.98661 1.27732 1.71325 1.31825 1.07966 1.15106 1.27109 0.96798 0.94220 0.90412 1.41892 1.52826 1.04659 1.06301 1.19656 1.41082 1.02299 0.83364 0.88203 1.25582 0.93570 0.97239 0.99804 1.70039 1.25286 1.10119 1.41095 0.85941 0.79985 0.78350 0.80719 1.19489 1.20076 1.18684 1.21421 0.91336 0.94633 0.91687 1.21812 1.01843 0.96546 0.96371 1.23568 0.79040 0.84163 0.80416 1.90716 1.44989 1.43649 1.60766 1.84575 1.35665 1.56973 1.56186 1.85289 1.70154 1.09925 1.12957 0.92587 0.92392 0.92667 0.91060 0.90225 0.90925 0.86326 0.90588 0.87935 0.87428 0.73889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.90 37.16 0.37 -1.58 16 2 C -0.02 -0.23 6.56 -27.88 -0.18 -0.42 16 3 C -0.09 -1.73 7.05 -13.26 -0.09 -1.82 16 4 N -0.21 -4.86 11.56 33.59 0.39 -4.47 16 5 N -0.41 -9.89 10.99 30.94 0.34 -9.55 16 6 C 0.28 6.78 7.96 -87.41 -0.70 6.08 16 7 N -0.36 -8.60 2.59 -115.38 -0.30 -8.90 16 8 C -0.33 -7.93 8.84 -15.11 -0.13 -8.06 16 9 H 0.10 2.32 7.76 -52.49 -0.41 1.91 16 10 C 0.05 1.15 4.97 -17.46 -0.09 1.07 16 11 N -0.83 -20.62 11.50 55.49 0.64 -19.98 16 12 Si 0.93 17.89 29.60 -169.99 -5.03 12.86 16 13 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 14 H -0.28 -5.29 7.11 56.52 0.40 -4.89 16 15 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 16 C 0.14 3.03 4.41 -4.04 -0.02 3.01 16 17 C -0.13 -2.34 6.13 -27.89 -0.17 -2.51 16 18 C 0.49 8.42 8.33 36.00 0.30 8.72 16 19 O -0.51 -10.39 16.74 -18.75 -0.31 -10.71 16 20 O -0.52 -7.05 13.42 -39.25 -0.53 -7.57 16 21 S -0.02 -0.42 22.70 -107.50 -2.44 -2.86 16 22 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 24 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.28 6.48 8.32 -40.82 -0.34 6.15 16 28 H 0.12 2.86 5.54 -51.92 -0.29 2.57 16 29 H 0.08 1.82 7.69 -51.93 -0.40 1.42 16 30 H 0.10 1.89 8.14 -51.93 -0.42 1.47 16 31 H 0.11 1.87 8.14 -51.93 -0.42 1.45 16 32 H 0.40 3.50 9.10 45.56 0.41 3.91 16 LS Contribution 299.97 15.07 4.52 4.52 Total: -1.00 -29.24 299.97 -6.21 -35.46 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -2.77 Total: 6.72 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: -0.71 Total: 4.49 kcal Atomic # 7 Polarization: -43.97 SS G_CDS: 1.07 Total: -42.90 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: -0.84 Total: -18.28 kcal Atomic # 14 Polarization: 17.89 SS G_CDS: -5.03 Total: 12.86 kcal Atomic # 16 Polarization: -0.42 SS G_CDS: -2.44 Total: -2.86 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.24 -6.21 -35.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071672944.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.049 kcal (2) G-P(sol) polarization free energy of solvation -29.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds