Wall clock time and date at job start Mon Mar 30 2020 05:07:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.50703 * 109.46964 * 2 1
4 4 N 1.29500 * 126.05351 * 90.02722 * 3 2 1
5 5 N 1.26102 * 117.92927 * 179.97438 * 4 3 2
6 6 C 1.30404 * 117.60136 * 0.02562 * 5 4 3
7 7 N 1.38287 * 126.16168 * 179.97438 * 6 5 4
8 8 C 1.36882 * 120.00299 * 174.82340 * 7 6 5
9 9 H 1.08000 * 119.99923 * 321.03049 * 8 7 6
10 10 C 1.38746 * 119.99902 * 141.01979 * 8 7 6
11 11 N 1.31604 * 120.00398 * 339.68945 * 10 8 7
12 12 Si 1.86805 * 119.99520 * 159.68248 * 10 8 7
13 13 H 1.48494 * 109.47335 * 90.00607 * 12 10 8
14 14 H 1.48507 * 109.46718 * 210.00377 * 12 10 8
15 15 H 1.48503 * 109.47272 * 330.00084 * 12 10 8
16 16 C 1.46503 * 119.99665 * 354.82424 * 7 6 5
17 17 C 1.53000 * 109.47365 * 90.00221 * 16 7 6
18 18 C 1.50694 * 109.47291 * 179.97438 * 17 16 7
19 19 O 1.20821 * 119.99943 * 0.02562 * 18 17 16
20 20 O 1.34229 * 120.00032 * 179.97438 * 18 17 16
21 21 S 1.76478 * 126.05517 * 269.96902 * 3 2 1
22 22 H 1.08995 * 109.47033 * 179.97438 * 1 2 3
23 23 H 1.09000 * 109.46813 * 299.99882 * 1 2 3
24 24 H 1.08998 * 109.46979 * 59.99850 * 1 2 3
25 25 H 1.09000 * 109.46813 * 240.00118 * 2 1 3
26 26 H 1.08998 * 109.46979 * 120.00150 * 2 1 3
27 27 H 0.96996 * 120.00093 * 175.02579 * 11 10 8
28 28 H 1.09008 * 109.47111 * 210.00105 * 16 7 6
29 29 H 1.09002 * 109.47454 * 329.99542 * 16 7 6
30 30 H 1.09002 * 109.46513 * 299.99893 * 17 16 7
31 31 H 1.08999 * 109.46935 * 59.99498 * 17 16 7
32 32 H 0.96699 * 117.00145 * 180.02562 * 20 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0324 1.4209 0.0000
4 7 2.2869 2.1393 1.0470
5 7 2.7033 3.3161 0.8688
6 6 2.8477 3.7263 -0.3607
7 7 3.2890 4.9752 -0.7577
8 6 3.4948 5.2384 -2.0851
9 1 3.9285 4.4837 -2.7243
10 6 3.1459 6.4747 -2.6094
11 7 2.2782 7.2363 -1.9777
12 14 3.9081 7.0582 -4.2120
13 1 3.0651 6.6151 -5.3513
14 1 3.9950 8.5407 -4.2078
15 1 5.2701 6.4829 -4.3508
16 6 3.5363 6.0167 0.2425
17 6 4.9894 5.9358 0.7146
18 6 5.2440 7.0075 1.7430
19 8 4.3544 7.7587 2.0656
20 8 6.4588 7.1269 2.3013
21 16 2.3793 2.3999 -1.4267
22 1 -0.3633 -1.0276 -0.0005
23 1 -0.3633 0.5138 0.8900
24 1 -0.3633 0.5138 -0.8900
25 1 1.8933 -0.5138 -0.8900
26 1 1.8933 -0.5138 0.8900
27 1 2.0885 8.1295 -2.3049
28 1 3.3519 6.9960 -0.1994
29 1 2.8695 5.8703 1.0922
30 1 5.1737 4.9565 1.1565
31 1 5.6562 6.0823 -0.1351
32 1 6.5739 7.8290 2.9562
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000071672944.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:07:20
Heat of formation + Delta-G solvation = -55.985330 kcal
Electronic energy + Delta-G solvation = -18475.503576 eV
Core-core repulsion = 15369.295572 eV
Total energy + Delta-G solvation = -3106.208004 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 271.078 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-41.43677 -41.16166 -38.71523 -37.12900 -34.99424 -34.18900 -32.63447 -30.14867
-27.48952 -26.77576 -24.95027 -23.47986 -22.12323 -20.60835 -19.85628 -19.01486
-18.76127 -17.77308 -17.63384 -17.02592 -16.46405 -16.12767 -15.64191 -15.08698
-14.78653 -14.58426 -14.29450 -14.02919 -13.82917 -13.50124 -13.15510 -13.00359
-12.85457 -12.58634 -12.48126 -12.19555 -12.08329 -11.97624 -11.72587 -11.56348
-10.91917 -10.72782 -10.55695 -10.11561 -9.01169 -8.43388 -6.27610 0.13882
0.31007 0.92881 1.15497 1.41668 1.44134 1.57031 1.93404 2.11551
2.22938 2.79942 2.85059 3.75561 3.86163 4.02111 4.23709 4.36296
4.48546 4.49527 4.63254 4.66577 4.78368 5.05524 5.12167 5.16356
5.22789 5.30113 5.42822 5.55672 5.81132 6.31903 6.89740 6.97747
7.21951 8.29280 8.44667
Molecular weight = 271.08amu
Principal moments of inertia in cm(-1)
A = 0.014286 B = 0.007329 C = 0.005231
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1959.439447 B = 3819.687799 C = 5351.095230
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C -0.020 4.020
3 C -0.058 4.058
4 N -0.248 5.248
5 N -0.431 5.431
6 C 0.259 3.741
7 N -0.376 5.376
8 C -0.348 4.348
9 H 0.102 0.898
10 C 0.013 3.987
11 N -0.872 5.872
12 Si 0.991 3.009
13 H -0.269 1.269
14 H -0.274 1.274
15 H -0.251 1.251
16 C 0.144 3.856
17 C -0.117 4.117
18 C 0.498 3.502
19 O -0.548 6.548
20 O -0.506 6.506
21 S -0.008 6.008
22 H 0.093 0.907
23 H 0.042 0.958
24 H 0.047 0.953
25 H 0.098 0.902
26 H 0.097 0.903
27 H 0.282 0.718
28 H 0.100 0.900
29 H 0.048 0.952
30 H 0.103 0.897
31 H 0.121 0.879
32 H 0.428 0.572
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.680 -5.520 -0.265 7.241
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.062 4.062
3 C -0.346 4.346
4 N -0.082 5.082
5 N -0.286 5.286
6 C -0.110 4.110
7 N -0.072 5.072
8 C -0.478 4.478
9 H 0.119 0.881
10 C -0.194 4.194
11 N -0.505 5.505
12 Si 0.812 3.188
13 H -0.194 1.194
14 H -0.199 1.199
15 H -0.175 1.175
16 C 0.018 3.982
17 C -0.156 4.156
18 C 0.342 3.658
19 O -0.439 6.439
20 O -0.320 6.320
21 S 0.229 5.771
22 H 0.112 0.888
23 H 0.061 0.939
24 H 0.066 0.934
25 H 0.116 0.884
26 H 0.115 0.885
27 H 0.092 0.908
28 H 0.118 0.882
29 H 0.067 0.933
30 H 0.121 0.879
31 H 0.139 0.861
32 H 0.290 0.710
Dipole moment (debyes) X Y Z Total
from point charges 4.358 -5.121 -0.288 6.731
hybrid contribution 0.087 1.206 -0.039 1.209
sum 4.445 -3.916 -0.327 5.933
Atomic orbital electron populations
1.21743 0.93589 1.03228 1.01351 1.20017 0.96520 0.85074 1.04592
1.29376 1.13106 1.03943 0.88168 1.70402 1.10249 0.98801 1.28732
1.71274 1.32576 1.08916 1.15827 1.27413 0.97360 0.95039 0.91147
1.42027 1.53859 1.04801 1.06538 1.19880 1.41482 1.02842 0.83578
0.88061 1.26440 0.93443 0.96949 1.02612 1.70134 1.26834 1.10568
1.42984 0.84972 0.79518 0.77758 0.76550 1.19427 1.19895 1.17456
1.21174 0.93195 0.93467 0.90352 1.21588 0.99551 0.97152 0.97346
1.23175 0.79554 0.83184 0.79914 1.90714 1.46355 1.44875 1.61920
1.84495 1.33095 1.57895 1.56491 1.85155 1.69671 1.09064 1.13175
0.88844 0.93898 0.93420 0.88385 0.88480 0.90804 0.88250 0.93315
0.87880 0.86118 0.70995
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.36 9.90 71.98 0.71 -2.65 16
2 C -0.02 -0.54 6.56 29.85 0.20 -0.35 16
3 C -0.06 -2.25 7.05 88.45 0.62 -1.62 16
4 N -0.25 -11.28 11.56 -47.63 -0.55 -11.83 16
5 N -0.43 -21.36 10.99 -56.02 -0.62 -21.98 16
6 C 0.26 12.62 7.96 179.23 1.43 14.05 16
7 N -0.38 -18.30 2.59 -518.96 -1.35 -19.65 16
8 C -0.35 -16.71 8.84 84.03 0.74 -15.96 16
9 H 0.10 4.70 7.76 -2.91 -0.02 4.68 16
10 C 0.01 0.62 4.97 84.85 0.42 1.04 16
11 N -0.87 -44.23 11.50 21.64 0.25 -43.98 16
12 Si 0.99 36.31 29.60 68.60 2.03 38.34 16
13 H -0.27 -9.78 7.11 99.48 0.71 -9.07 16
14 H -0.27 -9.88 7.11 99.48 0.71 -9.17 16
15 H -0.25 -8.65 7.11 99.48 0.71 -7.95 16
16 C 0.14 6.71 4.41 86.38 0.38 7.09 16
17 C -0.12 -4.38 6.13 29.85 0.18 -4.20 16
18 C 0.50 17.12 8.33 71.23 0.59 17.71 16
19 O -0.55 -22.52 16.74 21.98 0.37 -22.15 16
20 O -0.51 -12.69 13.42 -51.41 -0.69 -13.38 16
21 S -0.01 -0.31 22.70 -56.49 -1.28 -1.60 16
22 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16
23 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16
24 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16
25 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16
26 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16
27 H 0.28 13.37 8.32 -92.71 -0.77 12.60 16
28 H 0.10 5.01 5.54 -2.38 -0.01 5.00 16
29 H 0.05 2.46 7.69 -2.39 -0.02 2.45 16
30 H 0.10 3.84 8.14 -2.39 -0.02 3.82 16
31 H 0.12 4.16 8.14 -2.39 -0.02 4.14 16
32 H 0.43 6.41 9.10 -74.06 -0.67 5.73 16
Total: -1.00 -64.44 299.97 3.93 -60.52
By element:
Atomic # 1 Polarization: 20.09 SS G_CDS: 0.49 Total: 20.57 kcal
Atomic # 6 Polarization: 9.85 SS G_CDS: 5.28 Total: 15.13 kcal
Atomic # 7 Polarization: -95.17 SS G_CDS: -2.26 Total: -97.43 kcal
Atomic # 8 Polarization: -35.21 SS G_CDS: -0.32 Total: -35.53 kcal
Atomic # 14 Polarization: 36.31 SS G_CDS: 2.03 Total: 38.34 kcal
Atomic # 16 Polarization: -0.31 SS G_CDS: -1.28 Total: -1.60 kcal
Total: -64.44 3.93 -60.52 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000071672944.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 4.530 kcal
(2) G-P(sol) polarization free energy of solvation -64.442 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.912 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.926 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.515 kcal
(6) G-S(sol) free energy of system = (1) + (5) -55.985 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds