Wall clock time and date at job start Mon Mar 30 2020 05:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50703 * 109.46964 * 2 1 4 4 N 1.29500 * 126.05351 * 90.02722 * 3 2 1 5 5 N 1.26102 * 117.92927 * 179.97438 * 4 3 2 6 6 C 1.30404 * 117.60136 * 0.02562 * 5 4 3 7 7 N 1.38287 * 126.16168 * 179.97438 * 6 5 4 8 8 C 1.36882 * 120.00299 * 174.82340 * 7 6 5 9 9 H 1.08000 * 119.99923 * 321.03049 * 8 7 6 10 10 C 1.38746 * 119.99902 * 141.01979 * 8 7 6 11 11 N 1.31604 * 120.00398 * 339.68945 * 10 8 7 12 12 Si 1.86805 * 119.99520 * 159.68248 * 10 8 7 13 13 H 1.48494 * 109.47335 * 90.00607 * 12 10 8 14 14 H 1.48507 * 109.46718 * 210.00377 * 12 10 8 15 15 H 1.48503 * 109.47272 * 330.00084 * 12 10 8 16 16 C 1.46503 * 119.99665 * 354.82424 * 7 6 5 17 17 C 1.53000 * 109.47365 * 90.00221 * 16 7 6 18 18 C 1.50694 * 109.47291 * 179.97438 * 17 16 7 19 19 O 1.20821 * 119.99943 * 0.02562 * 18 17 16 20 20 O 1.34229 * 120.00032 * 179.97438 * 18 17 16 21 21 S 1.76478 * 126.05517 * 269.96902 * 3 2 1 22 22 H 1.08995 * 109.47033 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46813 * 299.99882 * 1 2 3 24 24 H 1.08998 * 109.46979 * 59.99850 * 1 2 3 25 25 H 1.09000 * 109.46813 * 240.00118 * 2 1 3 26 26 H 1.08998 * 109.46979 * 120.00150 * 2 1 3 27 27 H 0.96996 * 120.00093 * 175.02579 * 11 10 8 28 28 H 1.09008 * 109.47111 * 210.00105 * 16 7 6 29 29 H 1.09002 * 109.47454 * 329.99542 * 16 7 6 30 30 H 1.09002 * 109.46513 * 299.99893 * 17 16 7 31 31 H 1.08999 * 109.46935 * 59.99498 * 17 16 7 32 32 H 0.96699 * 117.00145 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2869 2.1393 1.0470 5 7 2.7033 3.3161 0.8688 6 6 2.8477 3.7263 -0.3607 7 7 3.2890 4.9752 -0.7577 8 6 3.4948 5.2384 -2.0851 9 1 3.9285 4.4837 -2.7243 10 6 3.1459 6.4747 -2.6094 11 7 2.2782 7.2363 -1.9777 12 14 3.9081 7.0582 -4.2120 13 1 3.0651 6.6151 -5.3513 14 1 3.9950 8.5407 -4.2078 15 1 5.2701 6.4829 -4.3508 16 6 3.5363 6.0167 0.2425 17 6 4.9894 5.9358 0.7146 18 6 5.2440 7.0075 1.7430 19 8 4.3544 7.7587 2.0656 20 8 6.4588 7.1269 2.3013 21 16 2.3793 2.3999 -1.4267 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.0885 8.1295 -2.3049 28 1 3.3519 6.9960 -0.1994 29 1 2.8695 5.8703 1.0922 30 1 5.1737 4.9565 1.1565 31 1 5.6562 6.0823 -0.1351 32 1 6.5739 7.8290 2.9562 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071672944.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:20 Heat of formation + Delta-G solvation = -55.985330 kcal Electronic energy + Delta-G solvation = -18475.503576 eV Core-core repulsion = 15369.295572 eV Total energy + Delta-G solvation = -3106.208004 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.43677 -41.16166 -38.71523 -37.12900 -34.99424 -34.18900 -32.63447 -30.14867 -27.48952 -26.77576 -24.95027 -23.47986 -22.12323 -20.60835 -19.85628 -19.01486 -18.76127 -17.77308 -17.63384 -17.02592 -16.46405 -16.12767 -15.64191 -15.08698 -14.78653 -14.58426 -14.29450 -14.02919 -13.82917 -13.50124 -13.15510 -13.00359 -12.85457 -12.58634 -12.48126 -12.19555 -12.08329 -11.97624 -11.72587 -11.56348 -10.91917 -10.72782 -10.55695 -10.11561 -9.01169 -8.43388 -6.27610 0.13882 0.31007 0.92881 1.15497 1.41668 1.44134 1.57031 1.93404 2.11551 2.22938 2.79942 2.85059 3.75561 3.86163 4.02111 4.23709 4.36296 4.48546 4.49527 4.63254 4.66577 4.78368 5.05524 5.12167 5.16356 5.22789 5.30113 5.42822 5.55672 5.81132 6.31903 6.89740 6.97747 7.21951 8.29280 8.44667 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.014286 B = 0.007329 C = 0.005231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.439447 B = 3819.687799 C = 5351.095230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.020 4.020 3 C -0.058 4.058 4 N -0.248 5.248 5 N -0.431 5.431 6 C 0.259 3.741 7 N -0.376 5.376 8 C -0.348 4.348 9 H 0.102 0.898 10 C 0.013 3.987 11 N -0.872 5.872 12 Si 0.991 3.009 13 H -0.269 1.269 14 H -0.274 1.274 15 H -0.251 1.251 16 C 0.144 3.856 17 C -0.117 4.117 18 C 0.498 3.502 19 O -0.548 6.548 20 O -0.506 6.506 21 S -0.008 6.008 22 H 0.093 0.907 23 H 0.042 0.958 24 H 0.047 0.953 25 H 0.098 0.902 26 H 0.097 0.903 27 H 0.282 0.718 28 H 0.100 0.900 29 H 0.048 0.952 30 H 0.103 0.897 31 H 0.121 0.879 32 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.680 -5.520 -0.265 7.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.062 4.062 3 C -0.346 4.346 4 N -0.082 5.082 5 N -0.286 5.286 6 C -0.110 4.110 7 N -0.072 5.072 8 C -0.478 4.478 9 H 0.119 0.881 10 C -0.194 4.194 11 N -0.505 5.505 12 Si 0.812 3.188 13 H -0.194 1.194 14 H -0.199 1.199 15 H -0.175 1.175 16 C 0.018 3.982 17 C -0.156 4.156 18 C 0.342 3.658 19 O -0.439 6.439 20 O -0.320 6.320 21 S 0.229 5.771 22 H 0.112 0.888 23 H 0.061 0.939 24 H 0.066 0.934 25 H 0.116 0.884 26 H 0.115 0.885 27 H 0.092 0.908 28 H 0.118 0.882 29 H 0.067 0.933 30 H 0.121 0.879 31 H 0.139 0.861 32 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges 4.358 -5.121 -0.288 6.731 hybrid contribution 0.087 1.206 -0.039 1.209 sum 4.445 -3.916 -0.327 5.933 Atomic orbital electron populations 1.21743 0.93589 1.03228 1.01351 1.20017 0.96520 0.85074 1.04592 1.29376 1.13106 1.03943 0.88168 1.70402 1.10249 0.98801 1.28732 1.71274 1.32576 1.08916 1.15827 1.27413 0.97360 0.95039 0.91147 1.42027 1.53859 1.04801 1.06538 1.19880 1.41482 1.02842 0.83578 0.88061 1.26440 0.93443 0.96949 1.02612 1.70134 1.26834 1.10568 1.42984 0.84972 0.79518 0.77758 0.76550 1.19427 1.19895 1.17456 1.21174 0.93195 0.93467 0.90352 1.21588 0.99551 0.97152 0.97346 1.23175 0.79554 0.83184 0.79914 1.90714 1.46355 1.44875 1.61920 1.84495 1.33095 1.57895 1.56491 1.85155 1.69671 1.09064 1.13175 0.88844 0.93898 0.93420 0.88385 0.88480 0.90804 0.88250 0.93315 0.87880 0.86118 0.70995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.36 9.90 71.98 0.71 -2.65 16 2 C -0.02 -0.54 6.56 29.85 0.20 -0.35 16 3 C -0.06 -2.25 7.05 88.45 0.62 -1.62 16 4 N -0.25 -11.28 11.56 -47.63 -0.55 -11.83 16 5 N -0.43 -21.36 10.99 -56.02 -0.62 -21.98 16 6 C 0.26 12.62 7.96 179.23 1.43 14.05 16 7 N -0.38 -18.30 2.59 -518.96 -1.35 -19.65 16 8 C -0.35 -16.71 8.84 84.03 0.74 -15.96 16 9 H 0.10 4.70 7.76 -2.91 -0.02 4.68 16 10 C 0.01 0.62 4.97 84.85 0.42 1.04 16 11 N -0.87 -44.23 11.50 21.64 0.25 -43.98 16 12 Si 0.99 36.31 29.60 68.60 2.03 38.34 16 13 H -0.27 -9.78 7.11 99.48 0.71 -9.07 16 14 H -0.27 -9.88 7.11 99.48 0.71 -9.17 16 15 H -0.25 -8.65 7.11 99.48 0.71 -7.95 16 16 C 0.14 6.71 4.41 86.38 0.38 7.09 16 17 C -0.12 -4.38 6.13 29.85 0.18 -4.20 16 18 C 0.50 17.12 8.33 71.23 0.59 17.71 16 19 O -0.55 -22.52 16.74 21.98 0.37 -22.15 16 20 O -0.51 -12.69 13.42 -51.41 -0.69 -13.38 16 21 S -0.01 -0.31 22.70 -56.49 -1.28 -1.60 16 22 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 23 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 26 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 27 H 0.28 13.37 8.32 -92.71 -0.77 12.60 16 28 H 0.10 5.01 5.54 -2.38 -0.01 5.00 16 29 H 0.05 2.46 7.69 -2.39 -0.02 2.45 16 30 H 0.10 3.84 8.14 -2.39 -0.02 3.82 16 31 H 0.12 4.16 8.14 -2.39 -0.02 4.14 16 32 H 0.43 6.41 9.10 -74.06 -0.67 5.73 16 Total: -1.00 -64.44 299.97 3.93 -60.52 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: 0.49 Total: 20.57 kcal Atomic # 6 Polarization: 9.85 SS G_CDS: 5.28 Total: 15.13 kcal Atomic # 7 Polarization: -95.17 SS G_CDS: -2.26 Total: -97.43 kcal Atomic # 8 Polarization: -35.21 SS G_CDS: -0.32 Total: -35.53 kcal Atomic # 14 Polarization: 36.31 SS G_CDS: 2.03 Total: 38.34 kcal Atomic # 16 Polarization: -0.31 SS G_CDS: -1.28 Total: -1.60 kcal Total: -64.44 3.93 -60.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071672944.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.530 kcal (2) G-P(sol) polarization free energy of solvation -64.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds