Wall clock time and date at job start Mon Mar 30 2020 05:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.47677 * 2 1 4 4 C 1.38350 * 127.15102 * 270.17834 * 3 2 1 5 5 C 1.39777 * 126.56586 * 0.02562 * 4 3 2 6 6 H 1.07994 * 120.00032 * 0.27952 * 5 4 3 7 7 C 1.40082 * 120.00134 * 180.28460 * 5 4 3 8 8 N 1.30821 * 119.99644 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00240 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47075 * 89.99969 * 9 7 5 11 11 H 1.48505 * 109.47238 * 209.99947 * 9 7 5 12 12 H 1.48503 * 109.46866 * 329.99892 * 9 7 5 13 13 N 1.33098 * 106.86914 * 180.27271 * 4 3 2 14 14 N 1.28509 * 109.74614 * 359.74473 * 13 4 3 15 15 C 1.32388 * 110.20753 * 359.97438 * 14 13 4 16 16 S 1.76199 * 126.26219 * 180.02562 * 15 14 13 17 17 C 1.80997 * 100.00003 * 0.02615 * 16 15 14 18 18 C 1.52995 * 109.47156 * 180.02562 * 17 16 15 19 19 C 1.50705 * 109.47294 * 179.97438 * 18 17 16 20 20 O 1.20830 * 119.99737 * 0.02562 * 19 18 17 21 21 O 1.34223 * 120.00072 * 179.97438 * 19 18 17 22 22 H 1.09007 * 109.46861 * 59.99934 * 1 2 3 23 23 H 1.08998 * 109.47116 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.46732 * 300.00333 * 1 2 3 25 25 H 1.08999 * 109.47172 * 239.99505 * 2 1 3 26 26 H 1.08998 * 109.47082 * 120.00197 * 2 1 3 27 27 H 0.97006 * 119.99487 * 179.97438 * 8 7 5 28 28 H 1.09009 * 109.47027 * 299.99987 * 17 16 15 29 29 H 1.08999 * 109.47336 * 59.99768 * 17 16 15 30 30 H 1.09000 * 109.47224 * 300.00147 * 18 17 16 31 31 H 1.08999 * 109.47260 * 59.99632 * 18 17 16 32 32 H 0.96694 * 117.00155 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.2938 2.1700 -1.1027 5 6 2.1587 1.8021 -2.4444 6 1 1.8035 0.8149 -2.7005 7 6 2.4843 2.7138 -3.4569 8 7 2.9143 3.9097 -3.1467 9 14 2.3045 2.2219 -5.2499 10 1 0.9391 2.5647 -5.7227 11 1 3.3084 2.9505 -6.0663 12 1 2.5229 0.7593 -5.3862 13 7 2.7171 3.3445 -0.6414 14 7 2.7153 3.3325 0.6437 15 6 2.2936 2.1593 1.0894 16 16 2.1254 1.6852 2.7780 17 6 2.6740 3.2080 3.5881 18 6 2.6122 3.0287 5.1063 19 6 3.0696 4.2964 5.7809 20 8 3.4095 5.2460 5.1155 21 8 3.0983 4.3709 7.1207 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3632 0.5139 0.8899 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 3.1401 4.5409 -3.8478 28 1 3.6989 3.4292 3.2901 29 1 2.0239 4.0314 3.2924 30 1 1.5875 2.8073 5.4046 31 1 3.2626 2.2054 5.4017 32 1 3.3985 5.2046 7.5077 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075322007.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:51 Heat of formation + Delta-G solvation = -35.626006 kcal Electronic energy + Delta-G solvation = -18046.541432 eV Core-core repulsion = 14941.216274 eV Total energy + Delta-G solvation = -3105.325158 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.54153 -40.28988 -36.29893 -34.38316 -33.65511 -33.07167 -29.57666 -29.17067 -26.11825 -25.10512 -23.15163 -21.26156 -20.80622 -20.04284 -18.25658 -17.33678 -16.82274 -16.32577 -16.09714 -15.47578 -14.68678 -14.39463 -14.04392 -13.85334 -13.70441 -13.19455 -12.58669 -12.39438 -12.23229 -11.77253 -11.69558 -11.50800 -11.45025 -11.29512 -11.10032 -10.69855 -10.65829 -10.35865 -10.23255 -9.66927 -9.60857 -8.72354 -8.43642 -8.35929 -6.86834 -6.64036 -4.57103 1.84898 2.12959 2.73139 2.91875 3.06454 3.10007 3.13015 3.36305 3.86984 4.17643 4.43931 4.58599 4.90653 5.20448 5.31151 5.33083 5.42457 5.65558 5.73916 5.74968 6.01107 6.17628 6.18038 6.39200 6.54764 6.79872 6.90550 7.25424 7.51264 7.78825 7.90867 8.18673 8.71058 8.87338 10.28386 10.65658 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.029785 B = 0.004464 C = 0.003938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.842448 B = 6270.829654 C = 7109.320574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.126 3.874 3 N -0.510 5.510 4 C 0.349 3.651 5 C -0.447 4.447 6 H 0.084 0.916 7 C 0.078 3.922 8 N -0.736 5.736 9 Si 0.920 3.080 10 H -0.269 1.269 11 H -0.275 1.275 12 H -0.262 1.262 13 N -0.333 5.333 14 N -0.282 5.282 15 C 0.046 3.954 16 S -0.050 6.050 17 C -0.087 4.087 18 C -0.098 4.098 19 C 0.482 3.518 20 O -0.504 6.504 21 O -0.520 6.520 22 H 0.064 0.936 23 H 0.062 0.938 24 H 0.057 0.943 25 H 0.083 0.917 26 H 0.072 0.928 27 H 0.279 0.721 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.579 -6.028 12.256 13.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.001 3.999 3 N -0.212 5.212 4 C 0.104 3.896 5 C -0.487 4.487 6 H 0.102 0.898 7 C -0.147 4.147 8 N -0.360 5.360 9 Si 0.744 3.256 10 H -0.194 1.194 11 H -0.200 1.200 12 H -0.186 1.186 13 N -0.181 5.181 14 N -0.127 5.127 15 C -0.326 4.326 16 S 0.177 5.823 17 C -0.236 4.236 18 C -0.137 4.137 19 C 0.322 3.678 20 O -0.391 6.391 21 O -0.333 6.333 22 H 0.083 0.917 23 H 0.081 0.919 24 H 0.076 0.924 25 H 0.101 0.899 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.118 0.882 29 H 0.118 0.882 30 H 0.132 0.868 31 H 0.132 0.868 32 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -2.371 -5.488 12.326 13.699 hybrid contribution 0.038 0.154 -1.274 1.284 sum -2.333 -5.334 11.052 12.491 Atomic orbital electron populations 1.22128 0.95643 1.01535 1.03059 1.21290 0.94574 0.81477 1.02582 1.46174 1.57615 1.12302 1.05124 1.21610 0.93658 0.85850 0.88434 1.18099 1.43225 1.00893 0.86459 0.89807 1.25800 0.93433 0.94244 1.01262 1.70019 1.26882 1.04086 1.34990 0.86134 0.78894 0.79684 0.80917 1.19382 1.19996 1.18648 1.75485 1.27826 1.16969 0.97814 1.74585 1.15366 1.15179 1.07613 1.25149 1.19937 0.95204 0.92302 1.84143 1.85968 1.19559 0.92603 1.23059 1.07495 0.99508 0.93521 1.21037 1.05116 0.93960 0.93554 1.23330 0.74321 0.90053 0.80132 1.90801 1.43995 1.38954 1.65314 1.84515 1.80619 1.44869 1.23246 0.91727 0.91906 0.92368 0.89858 0.91000 0.90970 0.88178 0.88167 0.86820 0.86828 0.73169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.63 10.24 37.16 0.38 -2.25 16 2 C 0.13 2.29 6.56 -4.04 -0.03 2.26 16 3 N -0.51 -12.15 2.86 -115.79 -0.33 -12.48 16 4 C 0.35 9.73 7.53 -154.81 -1.17 8.57 16 5 C -0.45 -11.80 9.04 -38.32 -0.35 -12.15 16 6 H 0.08 2.01 7.31 -52.49 -0.38 1.62 16 7 C 0.08 2.00 5.50 -17.29 -0.10 1.91 16 8 N -0.74 -20.40 11.94 55.56 0.66 -19.74 16 9 Si 0.92 18.57 29.56 -169.99 -5.03 13.54 16 10 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 11 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 12 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 13 N -0.33 -10.14 10.48 31.26 0.33 -9.82 16 14 N -0.28 -7.86 11.62 30.89 0.36 -7.50 16 15 C 0.05 1.10 8.09 -87.28 -0.71 0.39 16 16 S -0.05 -0.86 21.79 -107.50 -2.34 -3.21 16 17 C -0.09 -1.38 4.51 37.15 0.17 -1.21 16 18 C -0.10 -1.07 5.81 -27.88 -0.16 -1.23 16 19 C 0.48 5.73 8.33 36.01 0.30 6.03 16 20 O -0.50 -8.15 16.74 -18.75 -0.31 -8.46 16 21 O -0.52 -4.50 13.42 -39.24 -0.53 -5.03 16 22 H 0.06 1.14 8.14 -51.92 -0.42 0.71 16 23 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 25 H 0.08 1.46 7.54 -51.93 -0.39 1.07 16 26 H 0.07 1.16 7.85 -51.93 -0.41 0.76 16 27 H 0.28 7.00 8.30 -40.82 -0.34 6.66 16 28 H 0.10 1.79 8.10 -51.91 -0.42 1.37 16 29 H 0.10 1.79 8.10 -51.92 -0.42 1.37 16 30 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.41 1.89 9.10 45.56 0.41 2.31 16 LS Contribution 302.33 15.07 4.56 4.56 Total: -1.00 -35.45 302.33 -7.14 -42.59 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -2.86 Total: 3.22 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: -1.65 Total: 2.32 kcal Atomic # 7 Polarization: -50.56 SS G_CDS: 1.02 Total: -49.54 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: -0.84 Total: -13.49 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.54 kcal Atomic # 16 Polarization: -0.86 SS G_CDS: -2.34 Total: -3.21 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -35.45 -7.14 -42.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075322007.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.965 kcal (2) G-P(sol) polarization free energy of solvation -35.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds