Wall clock time and date at job start Mon Mar 30 2020 05:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.47677 * 2 1 4 4 C 1.38350 * 127.15102 * 270.17834 * 3 2 1 5 5 C 1.39777 * 126.56586 * 0.02562 * 4 3 2 6 6 H 1.07994 * 120.00032 * 0.27952 * 5 4 3 7 7 C 1.40082 * 120.00134 * 180.28460 * 5 4 3 8 8 N 1.30821 * 119.99644 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00240 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47075 * 89.99969 * 9 7 5 11 11 H 1.48505 * 109.47238 * 209.99947 * 9 7 5 12 12 H 1.48503 * 109.46866 * 329.99892 * 9 7 5 13 13 N 1.33098 * 106.86914 * 180.27271 * 4 3 2 14 14 N 1.28509 * 109.74614 * 359.74473 * 13 4 3 15 15 C 1.32388 * 110.20753 * 359.97438 * 14 13 4 16 16 S 1.76199 * 126.26219 * 180.02562 * 15 14 13 17 17 C 1.80997 * 100.00003 * 0.02615 * 16 15 14 18 18 C 1.52995 * 109.47156 * 180.02562 * 17 16 15 19 19 C 1.50705 * 109.47294 * 179.97438 * 18 17 16 20 20 O 1.20830 * 119.99737 * 0.02562 * 19 18 17 21 21 O 1.34223 * 120.00072 * 179.97438 * 19 18 17 22 22 H 1.09007 * 109.46861 * 59.99934 * 1 2 3 23 23 H 1.08998 * 109.47116 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.46732 * 300.00333 * 1 2 3 25 25 H 1.08999 * 109.47172 * 239.99505 * 2 1 3 26 26 H 1.08998 * 109.47082 * 120.00197 * 2 1 3 27 27 H 0.97006 * 119.99487 * 179.97438 * 8 7 5 28 28 H 1.09009 * 109.47027 * 299.99987 * 17 16 15 29 29 H 1.08999 * 109.47336 * 59.99768 * 17 16 15 30 30 H 1.09000 * 109.47224 * 300.00147 * 18 17 16 31 31 H 1.08999 * 109.47260 * 59.99632 * 18 17 16 32 32 H 0.96694 * 117.00155 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.2938 2.1700 -1.1027 5 6 2.1587 1.8021 -2.4444 6 1 1.8035 0.8149 -2.7005 7 6 2.4843 2.7138 -3.4569 8 7 2.9143 3.9097 -3.1467 9 14 2.3045 2.2219 -5.2499 10 1 0.9391 2.5647 -5.7227 11 1 3.3084 2.9505 -6.0663 12 1 2.5229 0.7593 -5.3862 13 7 2.7171 3.3445 -0.6414 14 7 2.7153 3.3325 0.6437 15 6 2.2936 2.1593 1.0894 16 16 2.1254 1.6852 2.7780 17 6 2.6740 3.2080 3.5881 18 6 2.6122 3.0287 5.1063 19 6 3.0696 4.2964 5.7809 20 8 3.4095 5.2460 5.1155 21 8 3.0983 4.3709 7.1207 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3632 0.5139 0.8899 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 3.1401 4.5409 -3.8478 28 1 3.6989 3.4292 3.2901 29 1 2.0239 4.0314 3.2924 30 1 1.5875 2.8073 5.4046 31 1 3.2626 2.2054 5.4017 32 1 3.3985 5.2046 7.5077 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075322007.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:51 Heat of formation + Delta-G solvation = -60.361388 kcal Electronic energy + Delta-G solvation = -18047.614039 eV Core-core repulsion = 14941.216274 eV Total energy + Delta-G solvation = -3106.397764 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.47553 -41.24374 -37.18016 -36.06856 -35.57594 -34.17887 -31.40420 -30.93979 -27.89425 -26.42487 -24.70530 -22.79749 -22.41745 -21.59682 -19.21033 -19.18092 -17.86958 -17.73708 -17.31343 -17.18310 -16.42903 -16.07805 -15.34197 -15.24546 -15.12623 -14.67342 -13.89807 -13.73810 -13.50769 -13.21155 -13.14862 -12.97430 -12.80303 -12.66810 -12.50925 -12.18099 -11.97064 -11.78255 -11.63257 -11.62056 -11.42715 -10.58284 -10.33591 -10.26804 -8.53606 -8.53208 -6.58022 0.36635 1.15619 1.20036 1.21025 1.41121 1.57873 1.62155 2.17255 2.26138 2.46321 2.49507 3.35584 3.50121 3.85547 3.90671 4.24799 4.34721 4.39290 4.58605 4.60914 4.72540 4.78711 4.90041 4.93472 5.02917 5.25728 5.33694 5.61966 5.62541 6.07324 6.23432 6.76897 6.95740 6.99454 8.41964 8.66896 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.029785 B = 0.004464 C = 0.003938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.842448 B = 6270.829654 C = 7109.320574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.113 3.887 3 N -0.512 5.512 4 C 0.320 3.680 5 C -0.470 4.470 6 H 0.103 0.897 7 C 0.028 3.972 8 N -0.791 5.791 9 Si 1.006 2.994 10 H -0.261 1.261 11 H -0.272 1.272 12 H -0.246 1.246 13 N -0.393 5.393 14 N -0.336 5.336 15 C 0.053 3.947 16 S 0.025 5.975 17 C -0.089 4.089 18 C -0.089 4.089 19 C 0.492 3.508 20 O -0.557 6.557 21 O -0.505 6.505 22 H 0.040 0.960 23 H 0.107 0.893 24 H 0.053 0.947 25 H 0.089 0.911 26 H 0.098 0.902 27 H 0.283 0.717 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.145 0.855 31 H 0.145 0.855 32 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.628 -8.895 13.509 16.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.009 4.009 3 N -0.214 5.214 4 C 0.074 3.926 5 C -0.510 4.510 6 H 0.121 0.879 7 C -0.192 4.192 8 N -0.416 5.416 9 Si 0.825 3.175 10 H -0.186 1.186 11 H -0.197 1.197 12 H -0.169 1.169 13 N -0.239 5.239 14 N -0.181 5.181 15 C -0.321 4.321 16 S 0.251 5.749 17 C -0.239 4.239 18 C -0.128 4.128 19 C 0.334 3.666 20 O -0.448 6.448 21 O -0.319 6.319 22 H 0.060 0.940 23 H 0.125 0.875 24 H 0.072 0.928 25 H 0.108 0.892 26 H 0.116 0.884 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.163 0.837 31 H 0.163 0.837 32 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges -3.430 -8.379 13.630 16.363 hybrid contribution 0.347 0.983 -1.373 1.724 sum -3.083 -7.397 12.257 14.644 Atomic orbital electron populations 1.22061 0.93621 1.03973 1.01654 1.21756 0.96231 0.78743 1.04202 1.46531 1.56883 1.13921 1.04050 1.22013 0.94392 0.86219 0.90014 1.18602 1.43895 1.02059 0.86484 0.87905 1.27003 0.92038 0.93661 1.06520 1.70182 1.28652 1.05822 1.36928 0.84865 0.78973 0.79986 0.73714 1.18571 1.19713 1.16880 1.75329 1.30128 1.19287 0.99165 1.74461 1.18668 1.17730 1.07199 1.26434 1.15667 0.94197 0.95840 1.83746 1.85122 1.19105 0.86890 1.23078 1.05241 0.98344 0.97212 1.21042 1.07756 0.94511 0.89451 1.23395 0.72964 0.89436 0.80816 1.90806 1.46577 1.40804 1.66601 1.84461 1.79937 1.46243 1.21238 0.94040 0.87463 0.92816 0.89221 0.88366 0.90657 0.90728 0.90733 0.83746 0.83744 0.70891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.56 10.24 71.98 0.74 -3.82 16 2 C 0.11 3.90 6.56 86.38 0.57 4.47 16 3 N -0.51 -24.55 2.86 -520.24 -1.49 -26.03 16 4 C 0.32 18.52 7.53 133.23 1.00 19.52 16 5 C -0.47 -25.40 9.04 23.09 0.21 -25.19 16 6 H 0.10 4.91 7.31 -2.91 -0.02 4.89 16 7 C 0.03 1.48 5.50 85.29 0.47 1.95 16 8 N -0.79 -45.94 11.94 21.86 0.26 -45.68 16 9 Si 1.01 38.28 29.56 68.60 2.03 40.30 16 10 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 11 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 12 H -0.25 -8.58 7.11 99.48 0.71 -7.88 16 13 N -0.39 -25.24 10.48 -55.02 -0.58 -25.82 16 14 N -0.34 -19.71 11.62 -56.17 -0.65 -20.36 16 15 C 0.05 2.54 8.09 179.18 1.45 3.99 16 16 S 0.02 0.80 21.79 -56.49 -1.23 -0.43 16 17 C -0.09 -2.79 4.51 71.98 0.32 -2.47 16 18 C -0.09 -1.70 5.81 29.85 0.17 -1.52 16 19 C 0.49 10.89 8.33 71.24 0.59 11.48 16 20 O -0.56 -18.20 16.74 21.95 0.37 -17.83 16 21 O -0.51 -7.28 13.42 -51.34 -0.69 -7.97 16 22 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 23 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 24 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.09 2.98 7.54 -2.39 -0.02 2.96 16 26 H 0.10 2.85 7.85 -2.39 -0.02 2.83 16 27 H 0.28 14.90 8.30 -92.70 -0.77 14.13 16 28 H 0.07 2.74 8.10 -2.39 -0.02 2.72 16 29 H 0.07 2.74 8.10 -2.40 -0.02 2.72 16 30 H 0.14 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.14 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.43 2.87 9.10 -74.06 -0.67 2.20 16 Total: -1.00 -84.05 302.33 4.03 -80.02 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: 0.48 Total: 15.39 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: 5.53 Total: 8.41 kcal Atomic # 7 Polarization: -115.44 SS G_CDS: -2.45 Total: -117.89 kcal Atomic # 8 Polarization: -25.48 SS G_CDS: -0.32 Total: -25.80 kcal Atomic # 14 Polarization: 38.28 SS G_CDS: 2.03 Total: 40.30 kcal Atomic # 16 Polarization: 0.80 SS G_CDS: -1.23 Total: -0.43 kcal Total: -84.05 4.03 -80.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075322007.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.657 kcal (2) G-P(sol) polarization free energy of solvation -84.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds