Wall clock time and date at job start Mon Mar 30 2020 04:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47483 * 2 1 4 4 C 1.53004 * 109.46674 * 240.00103 * 2 1 3 5 5 C 1.50704 * 109.47474 * 120.00595 * 2 1 3 6 6 C 1.35096 * 121.82924 * 59.13982 * 5 2 1 7 7 C 1.46564 * 127.51398 * 0.06558 * 6 5 2 8 8 O 1.21624 * 119.99763 * 356.72565 * 7 6 5 9 9 O 1.34883 * 120.00263 * 176.72462 * 7 6 5 10 10 S 1.77290 * 104.97579 * 180.02562 * 6 5 2 11 11 C 1.72222 * 94.75408 * 359.81574 * 10 6 5 12 12 O 1.21703 * 126.93640 * 180.20614 * 11 10 6 13 13 N 1.34144 * 106.11964 * 0.31935 * 11 10 6 14 14 C 1.37284 * 121.09511 * 179.87987 * 13 11 10 15 15 H 1.08001 * 119.99927 * 114.46516 * 14 13 11 16 16 C 1.38919 * 120.00164 * 294.19504 * 14 13 11 17 17 N 1.31366 * 119.99665 * 353.76682 * 16 14 13 18 18 Si 1.86798 * 120.00251 * 173.77244 * 16 14 13 19 19 H 1.48500 * 109.47140 * 89.99785 * 18 16 14 20 20 H 1.48503 * 109.46856 * 209.99707 * 18 16 14 21 21 H 1.48498 * 109.46877 * 329.99278 * 18 16 14 22 22 H 1.09001 * 109.46897 * 326.08650 * 1 2 3 23 23 H 1.08991 * 109.47654 * 86.08895 * 1 2 3 24 24 H 1.08999 * 109.46986 * 206.09449 * 1 2 3 25 25 H 1.09002 * 109.47554 * 187.97356 * 3 2 1 26 26 H 1.09002 * 109.47463 * 307.97479 * 3 2 1 27 27 H 1.08997 * 109.46987 * 67.97237 * 3 2 1 28 28 H 1.08994 * 109.47281 * 290.15509 * 4 2 1 29 29 H 1.09000 * 109.47168 * 50.15618 * 4 2 1 30 30 H 1.09004 * 109.46893 * 170.15332 * 4 2 1 31 31 H 0.96703 * 116.99981 * 179.97438 * 9 7 6 32 32 H 0.97005 * 120.00196 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0398 -0.7213 -1.2493 5 6 2.0324 -0.7105 1.2304 6 6 1.7148 -1.9979 1.4893 7 6 0.8803 -2.8912 0.6809 8 8 0.3373 -2.4726 -0.3236 9 8 0.7145 -4.1777 1.0509 10 16 2.5285 -2.3716 3.0195 11 6 3.2267 -0.8071 3.1957 12 8 3.9413 -0.4231 4.1029 13 7 2.8219 -0.0967 2.1322 14 6 3.2047 1.2112 1.9659 15 1 3.8406 1.4866 1.1376 16 6 2.7693 2.1814 2.8598 17 7 1.8953 1.8721 3.7905 18 14 3.4266 3.9257 2.7384 19 1 2.5560 4.7210 1.8358 20 1 3.4380 4.5454 4.0879 21 1 4.8084 3.8972 2.1951 22 1 -0.3633 0.8529 0.5734 23 1 -0.3634 0.0701 -1.0252 24 1 -0.3633 -0.9229 0.4520 25 1 3.1207 1.4457 -0.1426 26 1 1.5650 1.9959 -0.8101 27 1 1.7978 1.9134 0.9526 28 1 1.8271 -1.7870 -1.1659 29 1 1.5402 -0.3189 -2.1305 30 1 3.1156 -0.5716 -1.3416 31 1 0.1549 -4.7283 0.4863 32 1 1.5910 2.5496 4.4145 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076732925.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:15 Heat of formation + Delta-G solvation = -64.240307 kcal Electronic energy + Delta-G solvation = -20075.906730 eV Core-core repulsion = 16937.048012 eV Total energy + Delta-G solvation = -3138.858718 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.071 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.75136 -39.36284 -37.07878 -35.64044 -34.41987 -33.33634 -30.30967 -27.24016 -26.67188 -25.26778 -24.41378 -22.52593 -20.20704 -19.22893 -17.90890 -17.62066 -16.48080 -16.14778 -15.70503 -15.35510 -14.70144 -14.46247 -13.99830 -13.62273 -13.35922 -13.20617 -12.72416 -12.11661 -12.08751 -11.92476 -11.60047 -11.39667 -11.07779 -10.88982 -10.71554 -10.56710 -10.46121 -10.34455 -10.11890 -9.66748 -9.44454 -9.02987 -8.81211 -8.35342 -6.99884 -6.76885 -4.67992 1.59153 1.98051 2.68338 2.98811 3.05038 3.09109 3.21233 3.44855 3.60981 3.91830 4.43215 4.65494 5.25686 5.56807 5.66514 5.88573 6.14953 6.21827 6.26424 6.38600 6.46434 6.52328 6.63958 6.75539 6.80776 6.93611 7.07701 7.17470 7.45714 7.63218 7.94862 8.13730 8.42586 8.61823 8.99424 10.27898 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.022257 B = 0.009620 C = 0.007403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.738898 B = 2909.858786 C = 3781.493891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.002 4.002 3 C -0.148 4.148 4 C -0.141 4.141 5 C 0.252 3.748 6 C -0.341 4.341 7 C 0.573 3.427 8 O -0.514 6.514 9 O -0.515 6.515 10 S -0.045 6.045 11 C 0.491 3.509 12 O -0.460 6.460 13 N -0.345 5.345 14 C -0.377 4.377 15 H 0.115 0.885 16 C 0.066 3.934 17 N -0.834 5.834 18 Si 0.927 3.073 19 H -0.267 1.267 20 H -0.276 1.276 21 H -0.261 1.261 22 H 0.046 0.954 23 H 0.055 0.945 24 H 0.072 0.928 25 H 0.060 0.940 26 H 0.026 0.974 27 H 0.107 0.893 28 H 0.078 0.922 29 H 0.056 0.944 30 H 0.043 0.957 31 H 0.405 0.595 32 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.440 -3.884 -7.052 8.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.004 4.004 3 C -0.204 4.204 4 C -0.199 4.199 5 C 0.125 3.875 6 C -0.463 4.463 7 C 0.421 3.579 8 O -0.408 6.408 9 O -0.326 6.326 10 S 0.197 5.803 11 C 0.175 3.825 12 O -0.339 6.339 13 N -0.044 5.044 14 C -0.507 4.507 15 H 0.132 0.868 16 C -0.147 4.147 17 N -0.464 5.464 18 Si 0.751 3.249 19 H -0.192 1.192 20 H -0.201 1.201 21 H -0.185 1.185 22 H 0.065 0.935 23 H 0.074 0.926 24 H 0.091 0.909 25 H 0.079 0.921 26 H 0.045 0.955 27 H 0.125 0.875 28 H 0.097 0.903 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.262 0.738 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.842 -4.263 -5.395 7.119 hybrid contribution -0.219 1.537 -0.889 1.789 sum -2.061 -2.727 -6.285 7.154 Atomic orbital electron populations 1.21957 0.92676 1.02318 1.01511 1.19342 0.96306 0.95665 0.89127 1.22955 1.00336 0.94012 1.03143 1.22121 0.99463 1.02709 0.95592 1.20224 0.84696 0.90300 0.92283 1.20889 1.23162 0.97464 1.04764 1.18740 0.77816 0.79500 0.81856 1.90845 1.48031 1.75524 1.26354 1.84641 1.67977 1.22926 1.57029 1.84458 1.54087 1.18355 1.23438 1.22042 0.85086 0.89254 0.86132 1.90727 1.38390 1.71623 1.33141 1.41363 1.34482 1.12206 1.16338 1.19699 1.33965 0.80199 1.16800 0.86808 1.25628 0.93584 1.01085 0.94365 1.69804 1.25418 1.36173 1.14987 0.85924 0.80050 0.80395 0.78522 1.19210 1.20111 1.18518 0.93506 0.92591 0.90902 0.92145 0.95514 0.87485 0.90336 0.92481 0.93817 0.73785 0.90820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.34 7.86 37.15 0.29 -2.04 16 2 C 0.00 -0.03 0.75 -155.66 -0.12 -0.15 16 3 C -0.15 -2.83 6.58 37.16 0.24 -2.59 16 4 C -0.14 -2.41 7.99 37.16 0.30 -2.11 16 5 C 0.25 5.51 5.43 -82.46 -0.45 5.06 16 6 C -0.34 -7.09 6.10 -37.34 -0.23 -7.31 16 7 C 0.57 10.24 7.19 34.09 0.24 10.49 16 8 O -0.51 -9.20 10.86 -19.36 -0.21 -9.41 16 9 O -0.52 -7.53 13.40 -40.99 -0.55 -8.08 16 10 S -0.04 -0.98 22.93 -107.50 -2.46 -3.44 16 11 C 0.49 12.61 7.61 53.77 0.41 13.02 16 12 O -0.46 -12.99 17.55 5.19 0.09 -12.90 16 13 N -0.34 -8.43 2.40 -62.28 -0.15 -8.58 16 14 C -0.38 -9.16 5.18 -14.86 -0.08 -9.24 16 15 H 0.11 2.60 5.48 -52.49 -0.29 2.31 16 16 C 0.07 1.63 4.06 -17.50 -0.07 1.56 16 17 N -0.83 -22.08 13.17 55.49 0.73 -21.35 16 18 Si 0.93 18.93 29.45 -169.99 -5.01 13.92 16 19 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 20 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 21 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 22 H 0.05 0.87 7.89 -51.93 -0.41 0.46 16 23 H 0.06 0.92 7.72 -51.93 -0.40 0.51 16 24 H 0.07 1.41 4.76 -51.93 -0.25 1.16 16 25 H 0.06 1.14 5.68 -51.93 -0.30 0.84 16 26 H 0.03 0.44 8.13 -51.93 -0.42 0.02 16 27 H 0.11 2.33 4.55 -51.93 -0.24 2.09 16 28 H 0.08 1.38 4.57 -51.93 -0.24 1.15 16 29 H 0.06 0.87 7.88 -51.93 -0.41 0.46 16 30 H 0.04 0.72 8.06 -51.93 -0.42 0.30 16 31 H 0.41 3.60 9.11 45.56 0.42 4.01 16 32 H 0.28 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 271.99 15.07 4.10 4.10 Total: -1.00 -29.01 271.99 -5.00 -34.01 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -2.08 Total: 5.05 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: 0.55 Total: 6.69 kcal Atomic # 7 Polarization: -30.51 SS G_CDS: 0.58 Total: -29.93 kcal Atomic # 8 Polarization: -29.72 SS G_CDS: -0.67 Total: -30.39 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.01 Total: 13.92 kcal Atomic # 16 Polarization: -0.98 SS G_CDS: -2.46 Total: -3.44 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -29.01 -5.00 -34.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076732925.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.235 kcal (2) G-P(sol) polarization free energy of solvation -29.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds