Wall clock time and date at job start Mon Mar 30 2020 04:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47483 * 2 1 4 4 C 1.53004 * 109.46674 * 240.00103 * 2 1 3 5 5 C 1.50704 * 109.47474 * 120.00595 * 2 1 3 6 6 C 1.35096 * 121.82924 * 59.13982 * 5 2 1 7 7 C 1.46564 * 127.51398 * 0.06558 * 6 5 2 8 8 O 1.21624 * 119.99763 * 356.72565 * 7 6 5 9 9 O 1.34883 * 120.00263 * 176.72462 * 7 6 5 10 10 S 1.77290 * 104.97579 * 180.02562 * 6 5 2 11 11 C 1.72222 * 94.75408 * 359.81574 * 10 6 5 12 12 O 1.21703 * 126.93640 * 180.20614 * 11 10 6 13 13 N 1.34144 * 106.11964 * 0.31935 * 11 10 6 14 14 C 1.37284 * 121.09511 * 179.87987 * 13 11 10 15 15 H 1.08001 * 119.99927 * 114.46516 * 14 13 11 16 16 C 1.38919 * 120.00164 * 294.19504 * 14 13 11 17 17 N 1.31366 * 119.99665 * 353.76682 * 16 14 13 18 18 Si 1.86798 * 120.00251 * 173.77244 * 16 14 13 19 19 H 1.48500 * 109.47140 * 89.99785 * 18 16 14 20 20 H 1.48503 * 109.46856 * 209.99707 * 18 16 14 21 21 H 1.48498 * 109.46877 * 329.99278 * 18 16 14 22 22 H 1.09001 * 109.46897 * 326.08650 * 1 2 3 23 23 H 1.08991 * 109.47654 * 86.08895 * 1 2 3 24 24 H 1.08999 * 109.46986 * 206.09449 * 1 2 3 25 25 H 1.09002 * 109.47554 * 187.97356 * 3 2 1 26 26 H 1.09002 * 109.47463 * 307.97479 * 3 2 1 27 27 H 1.08997 * 109.46987 * 67.97237 * 3 2 1 28 28 H 1.08994 * 109.47281 * 290.15509 * 4 2 1 29 29 H 1.09000 * 109.47168 * 50.15618 * 4 2 1 30 30 H 1.09004 * 109.46893 * 170.15332 * 4 2 1 31 31 H 0.96703 * 116.99981 * 179.97438 * 9 7 6 32 32 H 0.97005 * 120.00196 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0398 -0.7213 -1.2493 5 6 2.0324 -0.7105 1.2304 6 6 1.7148 -1.9979 1.4893 7 6 0.8803 -2.8912 0.6809 8 8 0.3373 -2.4726 -0.3236 9 8 0.7145 -4.1777 1.0509 10 16 2.5285 -2.3716 3.0195 11 6 3.2267 -0.8071 3.1957 12 8 3.9413 -0.4231 4.1029 13 7 2.8219 -0.0967 2.1322 14 6 3.2047 1.2112 1.9659 15 1 3.8406 1.4866 1.1376 16 6 2.7693 2.1814 2.8598 17 7 1.8953 1.8721 3.7905 18 14 3.4266 3.9257 2.7384 19 1 2.5560 4.7210 1.8358 20 1 3.4380 4.5454 4.0879 21 1 4.8084 3.8972 2.1951 22 1 -0.3633 0.8529 0.5734 23 1 -0.3634 0.0701 -1.0252 24 1 -0.3633 -0.9229 0.4520 25 1 3.1207 1.4457 -0.1426 26 1 1.5650 1.9959 -0.8101 27 1 1.7978 1.9134 0.9526 28 1 1.8271 -1.7870 -1.1659 29 1 1.5402 -0.3189 -2.1305 30 1 3.1156 -0.5716 -1.3416 31 1 0.1549 -4.7283 0.4863 32 1 1.5910 2.5496 4.4145 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076732925.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:15 Heat of formation + Delta-G solvation = -83.576065 kcal Electronic energy + Delta-G solvation = -20076.745191 eV Core-core repulsion = 16937.048012 eV Total energy + Delta-G solvation = -3139.697179 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.071 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.43778 -40.83892 -38.81716 -37.08180 -35.99030 -35.12928 -32.04101 -28.88124 -28.06675 -26.89512 -26.11186 -24.19460 -21.80413 -20.83473 -19.74222 -19.05726 -18.09736 -17.83040 -17.38628 -16.81387 -16.49520 -16.21893 -15.57211 -15.29917 -14.96138 -14.59595 -14.26341 -13.79122 -13.66395 -13.44490 -13.21462 -12.90976 -12.75441 -12.45014 -12.20264 -12.15531 -11.95751 -11.75949 -11.67911 -11.24058 -10.97318 -10.83759 -10.61301 -10.12942 -8.78451 -8.59448 -6.54465 -0.06339 0.16142 0.93789 1.33419 1.39174 1.48582 1.51470 1.94002 2.04325 2.27044 2.78368 2.83592 3.72599 4.05080 4.21825 4.38019 4.66435 4.74155 4.91937 4.96770 5.00467 5.10945 5.15804 5.30812 5.35816 5.39624 5.57626 5.78537 5.80241 5.92489 6.16946 6.28604 6.80341 7.14225 7.18678 8.46403 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.022257 B = 0.009620 C = 0.007403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.738898 B = 2909.858786 C = 3781.493891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.004 4.004 3 C -0.143 4.143 4 C -0.134 4.134 5 C 0.232 3.768 6 C -0.339 4.339 7 C 0.581 3.419 8 O -0.508 6.508 9 O -0.508 6.508 10 S -0.010 6.010 11 C 0.462 3.538 12 O -0.510 6.510 13 N -0.358 5.358 14 C -0.382 4.382 15 H 0.124 0.876 16 C 0.025 3.975 17 N -0.880 5.880 18 Si 0.984 3.016 19 H -0.247 1.247 20 H -0.285 1.285 21 H -0.255 1.255 22 H 0.034 0.966 23 H 0.079 0.921 24 H 0.062 0.938 25 H 0.058 0.942 26 H 0.052 0.948 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.045 0.955 31 H 0.434 0.566 32 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.184 -4.377 -9.382 10.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.007 4.007 3 C -0.199 4.199 4 C -0.191 4.191 5 C 0.107 3.893 6 C -0.460 4.460 7 C 0.428 3.572 8 O -0.401 6.401 9 O -0.322 6.322 10 S 0.233 5.767 11 C 0.147 3.853 12 O -0.393 6.393 13 N -0.058 5.058 14 C -0.511 4.511 15 H 0.142 0.858 16 C -0.183 4.183 17 N -0.511 5.511 18 Si 0.804 3.196 19 H -0.171 1.171 20 H -0.211 1.211 21 H -0.178 1.178 22 H 0.053 0.947 23 H 0.098 0.902 24 H 0.081 0.919 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.097 0.903 28 H 0.092 0.908 29 H 0.098 0.902 30 H 0.064 0.936 31 H 0.296 0.704 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.628 -4.811 -7.796 9.531 hybrid contribution -0.080 1.484 -0.243 1.506 sum -2.709 -3.327 -8.039 9.112 Atomic orbital electron populations 1.21919 0.92029 1.01243 1.02660 1.19528 0.96717 0.95643 0.88817 1.22762 1.00464 0.94112 1.02566 1.22070 0.99828 1.02142 0.95096 1.20697 0.85063 0.90883 0.92685 1.21462 1.22456 0.97828 1.04259 1.18266 0.77317 0.80276 0.81352 1.90850 1.47491 1.75889 1.25915 1.84567 1.68462 1.21547 1.57632 1.84201 1.53269 1.15298 1.23949 1.22577 0.85487 0.90790 0.86447 1.90674 1.40601 1.73325 1.34747 1.41502 1.35181 1.12496 1.16611 1.20028 1.33819 0.80341 1.16904 0.85849 1.26475 0.93372 1.04672 0.93748 1.69910 1.27518 1.37296 1.16421 0.85086 0.80018 0.76160 0.78290 1.17060 1.21078 1.17817 0.94697 0.90212 0.91885 0.92327 0.92944 0.90303 0.90787 0.90193 0.93606 0.70445 0.91095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.17 7.86 71.98 0.57 -3.61 16 2 C 0.00 -0.16 0.75 -52.93 -0.04 -0.20 16 3 C -0.14 -5.21 6.58 71.98 0.47 -4.74 16 4 C -0.13 -4.14 7.99 71.98 0.57 -3.56 16 5 C 0.23 9.95 5.43 41.40 0.22 10.17 16 6 C -0.34 -13.58 6.10 23.72 0.14 -13.44 16 7 C 0.58 19.11 7.19 69.99 0.50 19.61 16 8 O -0.51 -16.45 10.86 19.43 0.21 -16.24 16 9 O -0.51 -13.02 13.40 -57.98 -0.78 -13.79 16 10 S -0.01 -0.42 22.93 -56.49 -1.30 -1.71 16 11 C 0.46 24.29 7.61 129.89 0.99 25.28 16 12 O -0.51 -30.04 17.55 -4.36 -0.08 -30.12 16 13 N -0.36 -17.71 2.40 -469.51 -1.12 -18.83 16 14 C -0.38 -18.73 5.18 84.00 0.44 -18.30 16 15 H 0.12 5.62 5.48 -2.91 -0.02 5.61 16 16 C 0.03 1.27 4.06 84.93 0.34 1.61 16 17 N -0.88 -48.07 13.17 21.65 0.29 -47.78 16 18 Si 0.98 38.92 29.45 68.60 2.02 40.94 16 19 H -0.25 -8.86 7.11 99.48 0.71 -8.15 16 20 H -0.29 -11.59 7.11 99.48 0.71 -10.89 16 21 H -0.25 -9.67 7.11 99.48 0.71 -8.96 16 22 H 0.03 1.25 7.89 -2.39 -0.02 1.24 16 23 H 0.08 2.33 7.72 -2.39 -0.02 2.31 16 24 H 0.06 2.29 4.76 -2.39 -0.01 2.28 16 25 H 0.06 2.12 5.68 -2.39 -0.01 2.11 16 26 H 0.05 1.62 8.13 -2.39 -0.02 1.60 16 27 H 0.08 3.39 4.55 -2.39 -0.01 3.38 16 28 H 0.07 2.36 4.57 -2.39 -0.01 2.35 16 29 H 0.08 2.09 7.88 -2.39 -0.02 2.08 16 30 H 0.04 1.38 8.06 -2.39 -0.02 1.36 16 31 H 0.43 5.80 9.11 -74.06 -0.67 5.12 16 32 H 0.28 14.45 8.31 -92.70 -0.77 13.68 16 Total: -1.00 -63.58 271.99 3.98 -59.60 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: 0.52 Total: 15.10 kcal Atomic # 6 Polarization: 8.62 SS G_CDS: 4.22 Total: 12.84 kcal Atomic # 7 Polarization: -65.77 SS G_CDS: -0.84 Total: -66.61 kcal Atomic # 8 Polarization: -59.51 SS G_CDS: -0.64 Total: -60.16 kcal Atomic # 14 Polarization: 38.92 SS G_CDS: 2.02 Total: 40.94 kcal Atomic # 16 Polarization: -0.42 SS G_CDS: -1.30 Total: -1.71 kcal Total: -63.58 3.98 -59.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076732925.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.977 kcal (2) G-P(sol) polarization free energy of solvation -63.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds