Wall clock time and date at job start Mon Mar 30 2020 04:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.46993 * 2 1 4 4 C 1.52998 * 109.47571 * 239.99781 * 2 1 3 5 5 C 1.50695 * 109.47442 * 184.99653 * 4 2 1 6 6 C 1.35097 * 121.82451 * 94.71880 * 5 4 2 7 7 C 1.46568 * 127.51618 * 0.02562 * 6 5 4 8 8 O 1.21616 * 119.99388 * 359.97438 * 7 6 5 9 9 O 1.34885 * 120.00334 * 180.02562 * 7 6 5 10 10 S 1.77289 * 104.97507 * 179.89068 * 6 5 4 11 11 C 1.72213 * 94.75610 * 0.31657 * 10 6 5 12 12 O 1.21700 * 126.94266 * 179.80846 * 11 10 6 13 13 N 1.34145 * 106.12220 * 359.81550 * 11 10 6 14 14 C 1.37278 * 121.10069 * 179.97438 * 13 11 10 15 15 H 1.07999 * 120.00106 * 305.92047 * 14 13 11 16 16 C 1.38917 * 120.00190 * 125.92560 * 14 13 11 17 17 N 1.31369 * 119.99950 * 341.01194 * 16 14 13 18 18 Si 1.86800 * 120.00398 * 161.01082 * 16 14 13 19 19 H 1.48501 * 109.46937 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47349 * 119.99548 * 18 16 14 21 21 H 1.48502 * 109.47269 * 240.00274 * 18 16 14 22 22 H 1.08998 * 109.47082 * 60.00604 * 1 2 3 23 23 H 1.09008 * 109.46966 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47239 * 299.99877 * 1 2 3 25 25 H 1.09006 * 109.47148 * 120.00029 * 2 1 3 26 26 H 1.09004 * 109.47419 * 180.02562 * 3 2 1 27 27 H 1.09006 * 109.47197 * 299.99999 * 3 2 1 28 28 H 1.09005 * 109.47534 * 59.99572 * 3 2 1 29 29 H 1.09005 * 109.46869 * 305.00384 * 4 2 1 30 30 H 1.09008 * 109.46738 * 64.99520 * 4 2 1 31 31 H 0.96704 * 117.00302 * 179.97438 * 9 7 6 32 32 H 0.97003 * 120.00292 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5420 -0.8293 -1.1888 6 6 4.1581 -1.9288 -0.7023 7 6 3.5307 -3.1444 -0.1763 8 8 2.3185 -3.2386 -0.1457 9 8 4.2975 -4.1583 0.2747 10 16 5.8912 -1.5824 -0.8424 11 6 5.6692 -0.0152 -1.5210 12 8 6.5394 0.7687 -1.8515 13 7 4.3433 0.1670 -1.6117 14 6 3.8205 1.3309 -2.1183 15 1 4.1159 2.2822 -1.7010 16 6 2.9115 1.2850 -3.1678 17 7 2.8273 0.2094 -3.9173 18 14 1.8088 2.7528 -3.5133 19 1 2.0970 3.8300 -2.5326 20 1 2.0660 3.2524 -4.8878 21 1 0.3866 2.3425 -3.3935 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5139 0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6765 1.9564 0.8900 29 1 1.6054 -1.7198 -1.2951 30 1 1.7516 -0.1583 -2.1370 31 1 3.8384 -4.9394 0.6125 32 1 2.1928 0.1775 -4.6504 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076781604.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:20 Heat of formation + Delta-G solvation = -102.488269 kcal Electronic energy + Delta-G solvation = -19863.929383 eV Core-core repulsion = 16723.412109 eV Total energy + Delta-G solvation = -3140.517274 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.071 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.47857 -39.24553 -36.97733 -35.48183 -34.89318 -33.25157 -30.68297 -27.48762 -26.66009 -25.87469 -23.17109 -22.41430 -19.97990 -19.47477 -17.85596 -17.56458 -16.76723 -16.38111 -15.72889 -15.09145 -14.80560 -14.58156 -14.31494 -13.63858 -13.39399 -13.33256 -12.87308 -12.17635 -12.04141 -11.91786 -11.70229 -11.32877 -11.26093 -11.23114 -10.91924 -10.64643 -10.54886 -10.33499 -10.02061 -9.91438 -9.76456 -9.15715 -8.96719 -8.44765 -7.13030 -6.89232 -4.81935 1.61142 1.91745 2.65939 2.84068 2.98944 3.03501 3.15245 3.44506 3.62126 3.80402 4.41346 4.50677 5.43276 5.53597 5.54683 5.93149 5.96783 6.13586 6.24015 6.27257 6.35310 6.43799 6.62545 6.71211 6.75287 6.94165 7.00652 7.09932 7.20033 7.59010 7.62458 8.22528 8.45926 8.49175 8.89659 10.09545 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.017806 B = 0.010483 C = 0.007721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.104933 B = 2670.366838 C = 3625.415347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.079 4.079 3 C -0.141 4.141 4 C -0.082 4.082 5 C 0.271 3.729 6 C -0.348 4.348 7 C 0.581 3.419 8 O -0.529 6.529 9 O -0.516 6.516 10 S -0.033 6.033 11 C 0.466 3.534 12 O -0.480 6.480 13 N -0.343 5.343 14 C -0.363 4.363 15 H 0.110 0.890 16 C 0.066 3.934 17 N -0.834 5.834 18 Si 0.916 3.084 19 H -0.256 1.256 20 H -0.274 1.274 21 H -0.266 1.266 22 H 0.051 0.949 23 H 0.054 0.946 24 H 0.050 0.950 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.056 0.944 28 H 0.035 0.965 29 H 0.097 0.903 30 H 0.110 0.890 31 H 0.405 0.595 32 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.344 -2.837 5.600 7.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.098 4.098 3 C -0.198 4.198 4 C -0.121 4.121 5 C 0.145 3.855 6 C -0.469 4.469 7 C 0.429 3.571 8 O -0.422 6.422 9 O -0.327 6.327 10 S 0.208 5.792 11 C 0.151 3.849 12 O -0.362 6.362 13 N -0.043 5.043 14 C -0.492 4.492 15 H 0.128 0.872 16 C -0.145 4.145 17 N -0.465 5.465 18 Si 0.739 3.261 19 H -0.179 1.179 20 H -0.200 1.200 21 H -0.191 1.191 22 H 0.070 0.930 23 H 0.073 0.927 24 H 0.069 0.931 25 H 0.081 0.919 26 H 0.088 0.912 27 H 0.075 0.925 28 H 0.054 0.946 29 H 0.115 0.885 30 H 0.128 0.872 31 H 0.262 0.738 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.795 -2.723 5.332 6.607 hybrid contribution -1.774 0.691 -0.595 1.994 sum -4.568 -2.032 4.736 6.887 Atomic orbital electron populations 1.21788 0.95517 1.01455 1.01121 1.20912 0.95106 0.96510 0.97241 1.22103 1.02594 0.95119 1.00009 1.21152 0.86601 1.03765 1.00605 1.19809 0.94952 0.86369 0.84413 1.20947 0.94206 1.00178 1.31550 1.18731 0.83786 0.81023 0.73594 1.90823 1.14660 1.81102 1.55573 1.84631 1.44081 1.28354 1.75603 1.84394 1.06702 1.17650 1.70410 1.22197 0.85616 0.92313 0.84757 1.90749 1.44028 1.48564 1.52820 1.41452 1.03735 1.14717 1.44380 1.19585 1.26869 0.84804 1.17936 0.87214 1.25582 0.97410 0.98322 0.93230 1.69985 1.32511 1.29155 1.14860 0.86055 0.79759 0.81021 0.79248 1.17936 1.19959 1.19095 0.92966 0.92685 0.93105 0.91882 0.91196 0.92537 0.94600 0.88466 0.87207 0.73777 0.90578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.19 37.16 0.34 -1.83 16 2 C -0.08 -1.42 2.91 -90.62 -0.26 -1.68 16 3 C -0.14 -2.56 7.61 37.15 0.28 -2.28 16 4 C -0.08 -1.70 4.03 -27.89 -0.11 -1.81 16 5 C 0.27 6.10 4.86 -82.47 -0.40 5.70 16 6 C -0.35 -7.45 6.60 -37.34 -0.25 -7.69 16 7 C 0.58 11.08 8.30 34.09 0.28 11.37 16 8 O -0.53 -10.54 15.04 -19.35 -0.29 -10.83 16 9 O -0.52 -7.90 13.40 -41.00 -0.55 -8.45 16 10 S -0.03 -0.71 22.93 -107.50 -2.46 -3.18 16 11 C 0.47 11.62 8.20 53.77 0.44 12.06 16 12 O -0.48 -12.94 17.69 5.19 0.09 -12.85 16 13 N -0.34 -8.34 2.13 -62.29 -0.13 -8.47 16 14 C -0.36 -8.80 5.20 -14.86 -0.08 -8.88 16 15 H 0.11 2.67 7.75 -52.49 -0.41 2.26 16 16 C 0.07 1.54 3.17 -17.50 -0.06 1.48 16 17 N -0.83 -20.51 11.84 55.49 0.66 -19.86 16 18 Si 0.92 17.98 27.38 -169.99 -4.65 13.32 16 19 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 20 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 21 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 22 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 23 H 0.05 0.82 8.14 -51.92 -0.42 0.39 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 26 H 0.07 1.41 5.40 -51.93 -0.28 1.13 16 27 H 0.06 1.05 4.88 -51.93 -0.25 0.79 16 28 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.10 2.05 5.73 -51.93 -0.30 1.75 16 30 H 0.11 2.43 4.30 -51.92 -0.22 2.21 16 31 H 0.41 3.89 9.11 45.56 0.42 4.30 16 32 H 0.28 6.46 8.31 -40.82 -0.34 6.12 16 LS Contribution 278.01 15.07 4.19 4.19 Total: -1.00 -28.12 278.01 -5.26 -33.38 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -2.29 Total: 6.29 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: 0.19 Total: 6.44 kcal Atomic # 7 Polarization: -28.85 SS G_CDS: 0.52 Total: -28.33 kcal Atomic # 8 Polarization: -31.37 SS G_CDS: -0.75 Total: -32.12 kcal Atomic # 14 Polarization: 17.98 SS G_CDS: -4.65 Total: 13.32 kcal Atomic # 16 Polarization: -0.71 SS G_CDS: -2.46 Total: -3.18 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -28.12 -5.26 -33.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076781604.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.109 kcal (2) G-P(sol) polarization free energy of solvation -28.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds