Wall clock time and date at job start Mon Mar 30 2020 04:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.46993 * 2 1 4 4 C 1.52998 * 109.47571 * 239.99781 * 2 1 3 5 5 C 1.50695 * 109.47442 * 184.99653 * 4 2 1 6 6 C 1.35097 * 121.82451 * 94.71880 * 5 4 2 7 7 C 1.46568 * 127.51618 * 0.02562 * 6 5 4 8 8 O 1.21616 * 119.99388 * 359.97438 * 7 6 5 9 9 O 1.34885 * 120.00334 * 180.02562 * 7 6 5 10 10 S 1.77289 * 104.97507 * 179.89068 * 6 5 4 11 11 C 1.72213 * 94.75610 * 0.31657 * 10 6 5 12 12 O 1.21700 * 126.94266 * 179.80846 * 11 10 6 13 13 N 1.34145 * 106.12220 * 359.81550 * 11 10 6 14 14 C 1.37278 * 121.10069 * 179.97438 * 13 11 10 15 15 H 1.07999 * 120.00106 * 305.92047 * 14 13 11 16 16 C 1.38917 * 120.00190 * 125.92560 * 14 13 11 17 17 N 1.31369 * 119.99950 * 341.01194 * 16 14 13 18 18 Si 1.86800 * 120.00398 * 161.01082 * 16 14 13 19 19 H 1.48501 * 109.46937 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47349 * 119.99548 * 18 16 14 21 21 H 1.48502 * 109.47269 * 240.00274 * 18 16 14 22 22 H 1.08998 * 109.47082 * 60.00604 * 1 2 3 23 23 H 1.09008 * 109.46966 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47239 * 299.99877 * 1 2 3 25 25 H 1.09006 * 109.47148 * 120.00029 * 2 1 3 26 26 H 1.09004 * 109.47419 * 180.02562 * 3 2 1 27 27 H 1.09006 * 109.47197 * 299.99999 * 3 2 1 28 28 H 1.09005 * 109.47534 * 59.99572 * 3 2 1 29 29 H 1.09005 * 109.46869 * 305.00384 * 4 2 1 30 30 H 1.09008 * 109.46738 * 64.99520 * 4 2 1 31 31 H 0.96704 * 117.00302 * 179.97438 * 9 7 6 32 32 H 0.97003 * 120.00292 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5420 -0.8293 -1.1888 6 6 4.1581 -1.9288 -0.7023 7 6 3.5307 -3.1444 -0.1763 8 8 2.3185 -3.2386 -0.1457 9 8 4.2975 -4.1583 0.2747 10 16 5.8912 -1.5824 -0.8424 11 6 5.6692 -0.0152 -1.5210 12 8 6.5394 0.7687 -1.8515 13 7 4.3433 0.1670 -1.6117 14 6 3.8205 1.3309 -2.1183 15 1 4.1159 2.2822 -1.7010 16 6 2.9115 1.2850 -3.1678 17 7 2.8273 0.2094 -3.9173 18 14 1.8088 2.7528 -3.5133 19 1 2.0970 3.8300 -2.5326 20 1 2.0660 3.2524 -4.8878 21 1 0.3866 2.3425 -3.3935 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5139 0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6765 1.9564 0.8900 29 1 1.6054 -1.7198 -1.2951 30 1 1.7516 -0.1583 -2.1370 31 1 3.8384 -4.9394 0.6125 32 1 2.1928 0.1775 -4.6504 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076781604.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:19 Heat of formation + Delta-G solvation = -120.685557 kcal Electronic energy + Delta-G solvation = -19864.718477 eV Core-core repulsion = 16723.412109 eV Total energy + Delta-G solvation = -3141.306368 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.071 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.22915 -40.76075 -38.76019 -36.92980 -36.41506 -35.03403 -32.40284 -29.09299 -28.19649 -27.44355 -24.82595 -24.15908 -21.57560 -20.98651 -19.44970 -19.35936 -18.39685 -18.08372 -17.40508 -16.75914 -16.48504 -16.23950 -15.87511 -15.23224 -14.98041 -14.85092 -14.35359 -13.84905 -13.67059 -13.47466 -13.33694 -12.83740 -12.73823 -12.66342 -12.40237 -12.26597 -12.09891 -11.76620 -11.58680 -11.42287 -11.33946 -10.90914 -10.76872 -10.22157 -8.89708 -8.67058 -6.67180 -0.10632 0.11095 0.89956 1.19844 1.38020 1.44425 1.50880 1.89961 2.01558 2.20644 2.71141 2.75091 3.92648 4.09659 4.12808 4.31810 4.48328 4.73033 4.82977 4.90982 4.96730 5.08877 5.16326 5.22863 5.24534 5.37448 5.54014 5.67540 5.71166 5.77572 5.82528 6.41592 6.66270 7.06697 7.14046 8.34006 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.017806 B = 0.010483 C = 0.007721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.104933 B = 2670.366838 C = 3625.415347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.076 4.076 3 C -0.137 4.137 4 C -0.076 4.076 5 C 0.253 3.747 6 C -0.353 4.353 7 C 0.590 3.410 8 O -0.535 6.535 9 O -0.505 6.505 10 S 0.017 5.983 11 C 0.435 3.565 12 O -0.522 6.522 13 N -0.351 5.351 14 C -0.379 4.379 15 H 0.099 0.901 16 C 0.041 3.959 17 N -0.866 5.866 18 Si 0.966 3.034 19 H -0.249 1.249 20 H -0.278 1.278 21 H -0.248 1.248 22 H 0.051 0.949 23 H 0.058 0.942 24 H 0.074 0.926 25 H 0.061 0.939 26 H 0.043 0.957 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.434 0.566 32 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.932 -3.540 6.611 9.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.096 4.096 3 C -0.194 4.194 4 C -0.115 4.115 5 C 0.128 3.872 6 C -0.474 4.474 7 C 0.436 3.564 8 O -0.429 6.429 9 O -0.319 6.319 10 S 0.260 5.740 11 C 0.121 3.879 12 O -0.408 6.408 13 N -0.050 5.050 14 C -0.507 4.507 15 H 0.117 0.883 16 C -0.168 4.168 17 N -0.498 5.498 18 Si 0.786 3.214 19 H -0.172 1.172 20 H -0.203 1.203 21 H -0.172 1.172 22 H 0.070 0.930 23 H 0.077 0.923 24 H 0.093 0.907 25 H 0.080 0.920 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.111 0.889 30 H 0.114 0.886 31 H 0.295 0.705 32 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.405 -3.491 6.381 8.503 hybrid contribution -1.233 0.739 -0.833 1.661 sum -5.637 -2.753 5.548 8.375 Atomic orbital electron populations 1.21749 0.93128 1.02132 1.02309 1.20932 0.97042 0.95895 0.95685 1.22021 1.00909 0.95556 1.00957 1.21146 0.85451 1.03553 1.01395 1.20147 0.95859 0.86247 0.84958 1.21487 0.94392 1.00948 1.30589 1.18356 0.83536 0.81086 0.73406 1.90826 1.14998 1.81334 1.55692 1.84556 1.43704 1.28723 1.74901 1.84080 1.06353 1.14570 1.68984 1.22707 0.85872 0.93593 0.85710 1.90701 1.44920 1.50207 1.55009 1.41560 1.03757 1.15197 1.44534 1.19633 1.27675 0.84715 1.18722 0.88349 1.26250 0.97697 1.00494 0.92327 1.70034 1.33369 1.30924 1.15501 0.85317 0.78915 0.78306 0.78812 1.17194 1.20326 1.17154 0.92985 0.92297 0.90711 0.92025 0.93821 0.93120 0.91997 0.88873 0.88561 0.70457 0.90074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.80 9.19 71.98 0.66 -3.14 16 2 C -0.08 -2.63 2.91 -10.80 -0.03 -2.67 16 3 C -0.14 -4.82 7.61 71.98 0.55 -4.27 16 4 C -0.08 -3.10 4.03 29.85 0.12 -2.98 16 5 C 0.25 11.36 4.86 41.40 0.20 11.56 16 6 C -0.35 -14.77 6.60 23.72 0.16 -14.61 16 7 C 0.59 21.14 8.30 69.99 0.58 21.72 16 8 O -0.54 -20.09 15.04 19.46 0.29 -19.79 16 9 O -0.50 -13.77 13.40 -57.99 -0.78 -14.55 16 10 S 0.02 0.74 22.93 -56.49 -1.30 -0.56 16 11 C 0.43 22.19 8.20 129.89 1.06 23.26 16 12 O -0.52 -29.28 17.69 -4.35 -0.08 -29.36 16 13 N -0.35 -17.36 2.13 -469.54 -1.00 -18.36 16 14 C -0.38 -18.76 5.20 84.00 0.44 -18.33 16 15 H 0.10 4.97 7.75 -2.91 -0.02 4.94 16 16 C 0.04 1.92 3.17 84.92 0.27 2.19 16 17 N -0.87 -42.93 11.84 21.65 0.26 -42.68 16 18 Si 0.97 36.24 27.38 68.60 1.88 38.12 16 19 H -0.25 -8.96 7.11 99.48 0.71 -8.25 16 20 H -0.28 -10.53 7.11 99.48 0.71 -9.82 16 21 H -0.25 -8.52 7.11 99.48 0.71 -7.82 16 22 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 23 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 24 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 26 H 0.04 1.75 5.40 -2.39 -0.01 1.74 16 27 H 0.05 1.81 4.88 -2.38 -0.01 1.80 16 28 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 29 H 0.09 3.83 5.73 -2.38 -0.01 3.82 16 30 H 0.10 4.23 4.30 -2.38 -0.01 4.22 16 31 H 0.43 6.57 9.11 -74.05 -0.67 5.90 16 32 H 0.29 13.18 8.31 -92.71 -0.77 12.41 16 Total: -1.00 -60.69 278.01 3.80 -56.89 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: 0.51 Total: 17.55 kcal Atomic # 6 Polarization: 8.72 SS G_CDS: 4.01 Total: 12.73 kcal Atomic # 7 Polarization: -60.29 SS G_CDS: -0.74 Total: -61.03 kcal Atomic # 8 Polarization: -63.14 SS G_CDS: -0.56 Total: -63.70 kcal Atomic # 14 Polarization: 36.24 SS G_CDS: 1.88 Total: 38.12 kcal Atomic # 16 Polarization: 0.74 SS G_CDS: -1.30 Total: -0.56 kcal Total: -60.69 3.80 -56.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076781604.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.796 kcal (2) G-P(sol) polarization free energy of solvation -60.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds