Wall clock time and date at job start Mon Mar 30 2020 05:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86801 * 119.99675 * 2 1 4 4 H 1.48500 * 109.47506 * 270.00283 * 3 2 1 5 5 H 1.48498 * 109.47217 * 30.00678 * 3 2 1 6 6 H 1.48502 * 109.46767 * 150.00423 * 3 2 1 7 7 C 1.38796 * 119.99941 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99554 * 179.97438 * 7 2 1 9 9 S 1.76200 * 120.00095 * 359.97438 * 7 2 1 10 10 C 1.80999 * 99.99730 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.46903 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00262 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99928 * 179.72354 * 11 10 9 14 14 C 1.48296 * 128.21072 * 359.95690 * 13 11 10 15 15 H 1.08999 * 112.20916 * 343.28331 * 14 13 11 16 16 C 1.54219 * 104.45043 * 221.59880 * 14 13 11 17 17 C 1.54305 * 104.79278 * 335.13303 * 16 14 13 18 18 C 1.48299 * 128.20955 * 180.27292 * 13 11 10 19 19 H 1.09001 * 112.20514 * 16.71912 * 18 13 11 20 20 C 1.53693 * 107.27634 * 252.56284 * 18 13 11 21 21 C 1.53841 * 108.77415 * 296.14688 * 20 18 13 22 22 O 1.42900 * 109.18426 * 293.62517 * 21 20 18 23 23 C 1.53152 * 109.78699 * 53.59593 * 21 20 18 24 24 H 0.97002 * 120.00288 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47193 * 60.00140 * 10 9 7 26 26 H 1.08994 * 109.47534 * 299.99814 * 10 9 7 27 27 H 1.08999 * 110.50946 * 216.21875 * 16 14 13 28 28 H 1.09004 * 110.30842 * 93.93819 * 16 14 13 29 29 H 1.09003 * 110.37875 * 241.00154 * 17 16 14 30 30 H 1.08993 * 110.47883 * 118.68794 * 17 16 14 31 31 H 1.08998 * 109.57471 * 55.81326 * 20 18 13 32 32 H 1.09004 * 109.57190 * 176.17921 * 20 18 13 33 33 H 1.09000 * 109.55302 * 173.79413 * 21 20 18 34 34 H 0.96695 * 113.99960 * 300.18577 * 22 21 20 35 35 H 1.08998 * 109.57034 * 186.53684 * 23 21 20 36 36 H 1.09000 * 109.57054 * 66.17251 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0466 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5479 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8913 -0.0021 11 6 1.9875 -5.3026 -0.0017 12 8 0.7912 -5.5023 -0.0009 13 7 2.8442 -6.3430 -0.0084 14 6 4.3268 -6.3103 -0.0175 15 1 4.7156 -5.3346 -0.3088 16 6 4.7300 -7.4171 -1.0129 17 6 3.5389 -8.3979 -1.0153 18 6 2.5278 -7.7918 -0.0148 19 1 1.4951 -7.9867 -0.3041 20 6 2.8628 -8.3383 1.3821 21 6 4.3755 -8.1929 1.6211 22 8 5.0779 -9.0510 0.7198 23 6 4.8015 -6.7418 1.3793 24 1 -0.4851 0.8400 0.0004 25 1 3.1252 -3.7316 0.8875 26 1 3.1238 -3.7309 -0.8925 27 1 5.6363 -7.9211 -0.6771 28 1 4.8771 -6.9960 -2.0075 29 1 3.8590 -9.3847 -0.6806 30 1 3.0979 -8.4599 -2.0100 31 1 2.3191 -7.7699 2.1367 32 1 2.5802 -9.3895 1.4404 33 1 4.6114 -8.4739 2.6475 34 1 4.8576 -9.9876 0.8162 35 1 5.8873 -6.6658 1.4355 36 1 4.3491 -6.0980 2.1336 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082597319.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:33 Heat of formation + Delta-G solvation = -67.648087 kcal Electronic energy + Delta-G solvation = -19289.938028 eV Core-core repulsion = 16286.764632 eV Total energy + Delta-G solvation = -3003.173396 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.17366 -38.19089 -35.90371 -32.41587 -31.85272 -31.46312 -31.18364 -28.67174 -25.48049 -24.31147 -23.75019 -21.18287 -20.65172 -18.74067 -17.72785 -17.60991 -16.75923 -15.45705 -14.89557 -14.87250 -14.78311 -14.42574 -13.89359 -13.73787 -13.41631 -13.13815 -12.90912 -12.71804 -12.57012 -12.27363 -11.97515 -11.74791 -11.13696 -11.07645 -11.04683 -10.96564 -10.74486 -10.42865 -10.28021 -9.80544 -9.69814 -9.31326 -9.05301 -8.44921 -8.21197 -6.48443 -6.20216 -3.90719 2.94514 3.10712 3.23304 3.27232 3.31430 3.64094 3.96820 4.21693 4.42033 4.51185 4.73037 4.87045 4.93715 4.97838 5.07795 5.14921 5.18861 5.29569 5.44686 5.56049 5.62273 5.71491 5.82512 5.85276 5.91627 5.96920 6.01571 6.04955 6.16606 6.19947 6.30257 6.58842 7.36899 7.60855 7.85782 8.36639 8.63213 9.24979 10.87263 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.037120 B = 0.004424 C = 0.004204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.127424 B = 6327.315559 C = 6658.319146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.072 0.928 9 S -0.061 6.061 10 C -0.146 4.146 11 C 0.553 3.447 12 O -0.520 6.520 13 N -0.623 5.623 14 C 0.129 3.871 15 H 0.098 0.902 16 C -0.121 4.121 17 C -0.123 4.123 18 C 0.135 3.865 19 H 0.096 0.904 20 C -0.161 4.161 21 C 0.109 3.891 22 O -0.552 6.552 23 C -0.124 4.124 24 H 0.268 0.732 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.103 0.897 28 H 0.056 0.944 29 H 0.091 0.909 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.055 0.945 34 H 0.367 0.633 35 H 0.081 0.919 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.032 -18.707 1.840 22.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.683 4.683 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.296 4.296 11 C 0.342 3.658 12 O -0.394 6.394 13 N -0.360 5.360 14 C 0.025 3.975 15 H 0.116 0.884 16 C -0.159 4.159 17 C -0.161 4.161 18 C 0.031 3.969 19 H 0.114 0.886 20 C -0.199 4.199 21 C 0.051 3.949 22 O -0.359 6.359 23 C -0.162 4.162 24 H 0.078 0.922 25 H 0.105 0.895 26 H 0.106 0.894 27 H 0.121 0.879 28 H 0.075 0.925 29 H 0.109 0.891 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.215 0.785 35 H 0.099 0.901 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 10.242 -18.206 1.661 20.955 hybrid contribution 1.671 0.847 0.274 1.893 sum 11.913 -17.359 1.935 21.143 Atomic orbital electron populations 1.70024 1.05957 1.27427 1.46920 1.24987 0.95017 0.99000 0.94539 0.86170 0.79405 0.81570 0.78357 1.20259 1.20749 1.19697 1.22862 0.94891 0.91639 1.58894 0.90966 1.85390 1.05043 0.96311 1.96699 1.23498 1.06381 0.95080 1.04676 1.19982 0.85574 0.85315 0.74884 1.90699 1.14945 1.85136 1.48632 1.49321 1.06539 1.05385 1.74743 1.22178 0.80405 0.99895 0.95049 0.88446 1.22623 0.99938 0.95347 0.98012 1.22729 0.95024 1.00194 0.98168 1.22098 0.99860 0.80582 0.94370 0.88591 1.22847 0.97024 1.01503 0.98551 1.21856 0.90244 0.90874 0.91974 1.86779 1.68871 1.20337 1.59941 1.22138 1.01802 0.94244 0.98002 0.92200 0.89458 0.89411 0.87855 0.92536 0.89063 0.92682 0.90592 0.90775 0.92673 0.78468 0.90086 0.90140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.44 13.22 55.49 0.73 -25.71 16 2 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 3 Si 0.92 21.59 29.55 -169.99 -5.02 16.56 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.53 -15.45 9.50 30.94 0.29 -15.15 16 8 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 9 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 10 C -0.15 -3.10 5.16 36.01 0.19 -2.92 16 11 C 0.55 11.16 7.94 -10.98 -0.09 11.08 16 12 O -0.52 -12.49 16.18 5.55 0.09 -12.40 16 13 N -0.62 -9.52 2.76 -153.42 -0.42 -9.94 16 14 C 0.13 1.55 3.98 -65.94 -0.26 1.29 16 15 H 0.10 1.18 7.42 -51.93 -0.39 0.80 16 16 C -0.12 -1.26 5.91 -25.41 -0.15 -1.41 16 17 C -0.12 -1.24 5.93 -25.20 -0.15 -1.39 16 18 C 0.13 1.69 4.12 -65.73 -0.27 1.41 16 19 H 0.10 1.36 7.93 -51.93 -0.41 0.94 16 20 C -0.16 -1.57 5.51 -25.93 -0.14 -1.71 16 21 C 0.11 0.92 3.80 -26.22 -0.10 0.82 16 22 O -0.55 -3.87 7.49 -35.23 -0.26 -4.13 16 23 C -0.12 -1.24 5.51 -26.29 -0.14 -1.39 16 24 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 25 H 0.09 1.72 8.14 -51.91 -0.42 1.30 16 26 H 0.09 1.75 8.03 -51.92 -0.42 1.34 16 27 H 0.10 0.99 5.78 -51.93 -0.30 0.69 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.09 0.70 5.48 -51.93 -0.28 0.41 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.37 1.27 8.55 45.56 0.39 1.66 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 298.38 15.07 4.50 4.50 Total: -1.00 -34.77 298.38 -7.86 -42.64 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -4.34 Total: -0.25 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: -0.92 Total: -7.35 kcal Atomic # 7 Polarization: -35.96 SS G_CDS: 0.31 Total: -35.65 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: -0.17 Total: -16.53 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -34.77 -7.86 -42.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082597319.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.013 kcal (2) G-P(sol) polarization free energy of solvation -34.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds