Wall clock time and date at job start Mon Mar 30 2020 05:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86801 * 119.99675 * 2 1 4 4 H 1.48500 * 109.47506 * 270.00283 * 3 2 1 5 5 H 1.48498 * 109.47217 * 30.00678 * 3 2 1 6 6 H 1.48502 * 109.46767 * 150.00423 * 3 2 1 7 7 C 1.38796 * 119.99941 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99554 * 179.97438 * 7 2 1 9 9 S 1.76200 * 120.00095 * 359.97438 * 7 2 1 10 10 C 1.80999 * 99.99730 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.46903 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00262 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99928 * 179.72354 * 11 10 9 14 14 C 1.48296 * 128.21072 * 359.95690 * 13 11 10 15 15 H 1.08999 * 112.20916 * 343.28331 * 14 13 11 16 16 C 1.54219 * 104.45043 * 221.59880 * 14 13 11 17 17 C 1.54305 * 104.79278 * 335.13303 * 16 14 13 18 18 C 1.48299 * 128.20955 * 180.27292 * 13 11 10 19 19 H 1.09001 * 112.20514 * 16.71912 * 18 13 11 20 20 C 1.53693 * 107.27634 * 252.56284 * 18 13 11 21 21 C 1.53841 * 108.77415 * 296.14688 * 20 18 13 22 22 O 1.42900 * 109.18426 * 293.62517 * 21 20 18 23 23 C 1.53152 * 109.78699 * 53.59593 * 21 20 18 24 24 H 0.97002 * 120.00288 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47193 * 60.00140 * 10 9 7 26 26 H 1.08994 * 109.47534 * 299.99814 * 10 9 7 27 27 H 1.08999 * 110.50946 * 216.21875 * 16 14 13 28 28 H 1.09004 * 110.30842 * 93.93819 * 16 14 13 29 29 H 1.09003 * 110.37875 * 241.00154 * 17 16 14 30 30 H 1.08993 * 110.47883 * 118.68794 * 17 16 14 31 31 H 1.08998 * 109.57471 * 55.81326 * 20 18 13 32 32 H 1.09004 * 109.57190 * 176.17921 * 20 18 13 33 33 H 1.09000 * 109.55302 * 173.79413 * 21 20 18 34 34 H 0.96695 * 113.99960 * 300.18577 * 22 21 20 35 35 H 1.08998 * 109.57034 * 186.53684 * 23 21 20 36 36 H 1.09000 * 109.57054 * 66.17251 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0466 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5479 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8913 -0.0021 11 6 1.9875 -5.3026 -0.0017 12 8 0.7912 -5.5023 -0.0009 13 7 2.8442 -6.3430 -0.0084 14 6 4.3268 -6.3103 -0.0175 15 1 4.7156 -5.3346 -0.3088 16 6 4.7300 -7.4171 -1.0129 17 6 3.5389 -8.3979 -1.0153 18 6 2.5278 -7.7918 -0.0148 19 1 1.4951 -7.9867 -0.3041 20 6 2.8628 -8.3383 1.3821 21 6 4.3755 -8.1929 1.6211 22 8 5.0779 -9.0510 0.7198 23 6 4.8015 -6.7418 1.3793 24 1 -0.4851 0.8400 0.0004 25 1 3.1252 -3.7316 0.8875 26 1 3.1238 -3.7309 -0.8925 27 1 5.6363 -7.9211 -0.6771 28 1 4.8771 -6.9960 -2.0075 29 1 3.8590 -9.3847 -0.6806 30 1 3.0979 -8.4599 -2.0100 31 1 2.3191 -7.7699 2.1367 32 1 2.5802 -9.3895 1.4404 33 1 4.6114 -8.4739 2.6475 34 1 4.8576 -9.9876 0.8162 35 1 5.8873 -6.6658 1.4355 36 1 4.3491 -6.0980 2.1336 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082597319.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:33 Heat of formation + Delta-G solvation = -92.640330 kcal Electronic energy + Delta-G solvation = -19291.021773 eV Core-core repulsion = 16286.764632 eV Total energy + Delta-G solvation = -3004.257141 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.15798 -39.62578 -36.74038 -34.61216 -33.01783 -32.38010 -32.07384 -30.22237 -27.69569 -25.15371 -24.76734 -22.24470 -21.59584 -20.14634 -19.34673 -18.45513 -18.15917 -16.90823 -16.54546 -16.41983 -16.24566 -15.61873 -15.14186 -14.70713 -14.62213 -14.32452 -14.18423 -13.93515 -13.64780 -13.37125 -13.24860 -13.14377 -12.90433 -12.72158 -12.63024 -11.98092 -11.90497 -11.73718 -11.29496 -11.16512 -11.11426 -10.87540 -10.40324 -10.32035 -9.65568 -8.71499 -8.36853 -6.16414 1.21231 1.41493 1.43021 1.53579 1.54944 2.06128 2.25164 2.97236 3.20661 3.36469 3.52411 3.67761 3.83504 3.93537 4.06151 4.11093 4.20746 4.21911 4.35184 4.39737 4.40692 4.63584 4.68060 4.94236 5.00703 5.07450 5.11567 5.17598 5.21369 5.30724 5.38811 5.44364 5.66335 6.17328 6.50094 7.02420 7.03885 7.10710 8.72683 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.037120 B = 0.004424 C = 0.004204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.127424 B = 6327.315559 C = 6658.319146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.015 3.985 3 Si 1.001 2.999 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.258 1.258 7 C -0.548 4.548 8 H 0.082 0.918 9 S -0.149 6.149 10 C -0.118 4.118 11 C 0.549 3.451 12 O -0.572 6.572 13 N -0.616 5.616 14 C 0.116 3.884 15 H 0.094 0.906 16 C -0.113 4.113 17 C -0.114 4.114 18 C 0.121 3.879 19 H 0.070 0.930 20 C -0.155 4.155 21 C 0.121 3.879 22 O -0.555 6.555 23 C -0.124 4.124 24 H 0.272 0.728 25 H 0.103 0.897 26 H 0.101 0.899 27 H 0.123 0.877 28 H 0.051 0.949 29 H 0.126 0.874 30 H 0.045 0.955 31 H 0.051 0.949 32 H 0.105 0.895 33 H 0.076 0.924 34 H 0.388 0.612 35 H 0.101 0.899 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.277 -19.982 2.203 25.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.190 4.190 3 Si 0.822 3.178 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.181 1.181 7 C -0.695 4.695 8 H 0.100 0.900 9 S 0.078 5.922 10 C -0.269 4.269 11 C 0.338 3.662 12 O -0.452 6.452 13 N -0.351 5.351 14 C 0.014 3.986 15 H 0.112 0.888 16 C -0.151 4.151 17 C -0.152 4.152 18 C 0.018 3.982 19 H 0.089 0.911 20 C -0.193 4.193 21 C 0.062 3.938 22 O -0.365 6.365 23 C -0.162 4.162 24 H 0.081 0.919 25 H 0.121 0.879 26 H 0.119 0.881 27 H 0.141 0.859 28 H 0.070 0.930 29 H 0.144 0.856 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.124 0.876 33 H 0.094 0.906 34 H 0.240 0.760 35 H 0.120 0.880 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 13.545 -19.549 2.023 23.869 hybrid contribution 0.714 1.078 0.145 1.301 sum 14.259 -18.471 2.168 23.435 Atomic orbital electron populations 1.70188 1.08032 1.28707 1.47873 1.26150 0.95975 1.03335 0.93549 0.84927 0.78191 0.75812 0.78876 1.19215 1.20102 1.18146 1.23184 0.95288 0.91876 1.59177 0.90030 1.85566 1.10406 0.99214 1.97022 1.23280 1.03413 0.94268 1.05961 1.19729 0.85368 0.85891 0.75232 1.90669 1.17051 1.85785 1.51645 1.49324 1.07860 1.05729 1.72151 1.22554 0.77937 1.00787 0.97369 0.88828 1.22622 1.00600 0.94659 0.97211 1.22772 0.93877 1.01572 0.96978 1.22433 0.99556 0.78884 0.97335 0.91135 1.22846 0.98282 1.02723 0.95488 1.21660 0.88731 0.90138 0.93266 1.86687 1.68351 1.21859 1.59560 1.22145 1.02880 0.95392 0.95791 0.91901 0.87878 0.88067 0.85884 0.93044 0.85619 0.93591 0.93041 0.87627 0.90610 0.76026 0.88044 0.91558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.94 13.22 21.65 0.29 -56.65 16 2 C 0.01 0.85 5.49 84.86 0.47 1.32 16 3 Si 1.00 44.17 29.55 68.60 2.03 46.20 16 4 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 5 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 6 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 7 C -0.55 -32.13 9.50 67.95 0.65 -31.49 16 8 H 0.08 4.46 7.80 -2.91 -0.02 4.43 16 9 S -0.15 -8.66 20.57 -56.49 -1.16 -9.82 16 10 C -0.12 -5.14 5.16 71.24 0.37 -4.77 16 11 C 0.55 22.92 7.94 87.66 0.70 23.62 16 12 O -0.57 -29.11 16.18 -3.04 -0.05 -29.16 16 13 N -0.62 -18.75 2.76 -757.71 -2.09 -20.84 16 14 C 0.12 2.59 3.98 45.30 0.18 2.77 16 15 H 0.09 2.14 7.42 -2.39 -0.02 2.12 16 16 C -0.11 -2.02 5.91 31.45 0.19 -1.84 16 17 C -0.11 -2.00 5.93 31.59 0.19 -1.82 16 18 C 0.12 2.92 4.12 45.43 0.19 3.11 16 19 H 0.07 2.06 7.93 -2.39 -0.02 2.04 16 20 C -0.15 -2.69 5.51 31.11 0.17 -2.52 16 21 C 0.12 1.58 3.80 30.93 0.12 1.70 16 22 O -0.55 -4.93 7.49 -148.98 -1.12 -6.05 16 23 C -0.12 -2.16 5.51 30.88 0.17 -1.99 16 24 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 25 H 0.10 4.10 8.14 -2.39 -0.02 4.08 16 26 H 0.10 4.08 8.03 -2.40 -0.02 4.06 16 27 H 0.12 1.80 5.78 -2.39 -0.01 1.78 16 28 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 29 H 0.13 1.35 5.48 -2.39 -0.01 1.34 16 30 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.39 0.40 8.55 -74.06 -0.63 -0.23 16 35 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -79.42 298.38 1.73 -77.69 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: 0.46 Total: 10.55 kcal Atomic # 6 Polarization: -15.29 SS G_CDS: 3.37 Total: -11.91 kcal Atomic # 7 Polarization: -75.69 SS G_CDS: -1.80 Total: -77.50 kcal Atomic # 8 Polarization: -34.04 SS G_CDS: -1.16 Total: -35.20 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Atomic # 16 Polarization: -8.66 SS G_CDS: -1.16 Total: -9.82 kcal Total: -79.42 1.73 -77.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082597319.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.949 kcal (2) G-P(sol) polarization free energy of solvation -79.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds