Wall clock time and date at job start Mon Mar 30 2020 04:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46501 * 120.00098 * 2 1 4 4 C 1.50697 * 109.46874 * 84.99996 * 3 2 1 5 5 C 1.38265 * 119.94517 * 269.72577 * 4 3 2 6 6 C 1.38150 * 120.05162 * 179.72908 * 5 4 3 7 7 C 1.38736 * 119.94524 * 0.56539 * 6 5 4 8 8 O 1.35901 * 120.05287 * 179.68288 * 7 6 5 9 9 C 1.38733 * 119.88625 * 359.71140 * 7 6 5 10 10 C 1.38139 * 119.94603 * 359.97438 * 9 7 6 11 11 S 1.65599 * 119.99791 * 180.02562 * 2 1 3 12 12 O 1.42099 * 106.40401 * 203.53818 * 11 2 1 13 13 O 1.42103 * 106.40122 * 336.45794 * 11 2 1 14 14 C 1.76205 * 107.21913 * 89.99801 * 11 2 1 15 15 H 1.07994 * 119.99577 * 359.97438 * 14 11 2 16 16 C 1.37875 * 119.99777 * 180.02562 * 14 11 2 17 17 N 1.31509 * 120.00309 * 359.97438 * 16 14 11 18 18 Si 1.86798 * 119.99707 * 180.02562 * 16 14 11 19 19 H 1.48506 * 109.47265 * 59.99784 * 18 16 14 20 20 H 1.48499 * 109.47305 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47277 * 299.99869 * 18 16 14 22 22 H 1.09001 * 109.47060 * 270.00243 * 1 2 3 23 23 H 1.09004 * 109.47073 * 29.99732 * 1 2 3 24 24 H 1.09000 * 109.47212 * 149.99814 * 1 2 3 25 25 H 1.09001 * 109.47135 * 205.00098 * 3 2 1 26 26 H 1.09001 * 109.46893 * 325.00392 * 3 2 1 27 27 H 1.07996 * 119.97272 * 359.97438 * 5 4 3 28 28 H 1.07997 * 120.02531 * 180.24992 * 6 5 4 29 29 H 0.96701 * 113.99830 * 270.01907 * 8 7 6 30 30 H 1.07998 * 120.02413 * 179.97438 * 9 7 6 31 31 H 1.08002 * 119.97347 * 180.02562 * 10 9 7 32 32 H 0.97001 * 120.00292 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3415 1.7656 1.4154 5 6 1.3766 2.5945 1.9573 6 6 1.5035 3.0468 3.2565 7 6 2.6061 2.6781 4.0136 8 8 2.7363 3.1270 5.2897 9 6 3.5756 1.8509 3.4655 10 6 3.4409 1.3961 2.1682 11 16 2.2930 -1.4342 -0.0006 12 8 3.5760 -1.1571 0.5439 13 8 1.4113 -2.4067 0.5434 14 6 2.5537 -1.8852 -1.6839 15 1 2.1866 -1.2498 -2.4762 16 6 3.2255 -3.0498 -1.9894 17 7 3.6721 -3.8238 -1.0245 18 14 3.5026 -3.5276 -3.7739 19 1 4.2924 -2.4690 -4.4529 20 1 4.2443 -4.8127 -3.8329 21 1 2.1917 -3.6804 -4.4547 22 1 -0.3633 0.0000 1.0277 23 1 -0.3633 0.8900 -0.5138 24 1 -0.3634 -0.8900 -0.5139 25 1 3.1859 1.1177 -0.4343 26 1 1.6502 2.0043 -0.5894 27 1 0.5212 2.8855 1.3658 28 1 0.7476 3.6910 3.6807 29 1 3.2124 3.9653 5.3651 30 1 4.4350 1.5628 4.0528 31 1 4.1952 0.7517 1.7412 32 1 4.1451 -4.6429 -1.2395 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083919758.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:57 Heat of formation + Delta-G solvation = -107.149569 kcal Electronic energy + Delta-G solvation = -18901.071672 eV Core-core repulsion = 15760.352269 eV Total energy + Delta-G solvation = -3140.719403 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.071 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.57972 -37.12809 -35.26609 -35.02651 -33.93882 -33.06836 -30.76684 -30.32497 -26.56481 -26.12300 -23.91869 -22.53831 -21.17466 -18.75985 -18.28337 -17.26362 -16.28893 -15.87799 -15.44855 -15.20852 -15.07792 -14.77623 -14.16466 -13.64972 -13.30579 -13.13296 -12.90793 -12.29365 -12.02373 -11.98157 -11.83085 -11.50564 -11.22852 -11.21125 -11.16308 -10.63430 -10.35763 -10.26010 -10.24477 -10.05928 -9.24795 -8.93980 -8.76074 -8.39580 -8.19984 -6.70299 -5.33387 1.35933 1.58471 2.29007 3.07469 3.12167 3.17549 3.80062 4.05968 4.30097 4.63264 4.64510 5.03480 5.15552 5.19758 5.47481 5.63244 5.68786 5.81774 5.88318 5.95630 6.07790 6.15791 6.24745 6.28883 6.45262 6.49971 6.64031 6.69799 6.94626 7.06304 7.31330 7.56733 7.71246 7.95507 8.87819 10.23079 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.036316 B = 0.005409 C = 0.005170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.820593 B = 5174.872434 C = 5414.897254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -1.012 6.012 3 C 0.168 3.832 4 C -0.110 4.110 5 C -0.092 4.092 6 C -0.155 4.155 7 C 0.095 3.905 8 O -0.502 6.502 9 C -0.149 4.149 10 C -0.080 4.080 11 S 2.714 3.286 12 O -1.000 7.000 13 O -1.004 7.004 14 C -1.023 5.023 15 H 0.101 0.899 16 C 0.133 3.867 17 N -0.845 5.845 18 Si 0.920 3.080 19 H -0.264 1.264 20 H -0.276 1.276 21 H -0.264 1.264 22 H 0.043 0.957 23 H 0.058 0.942 24 H 0.072 0.928 25 H 0.093 0.907 26 H 0.076 0.924 27 H 0.123 0.877 28 H 0.123 0.877 29 H 0.385 0.615 30 H 0.127 0.873 31 H 0.151 0.849 32 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.480 13.573 2.864 14.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.846 5.846 3 C 0.042 3.958 4 C -0.112 4.112 5 C -0.111 4.111 6 C -0.173 4.173 7 C 0.051 3.949 8 O -0.311 6.311 9 C -0.167 4.167 10 C -0.099 4.099 11 S 2.815 3.185 12 O -0.990 6.990 13 O -0.994 6.994 14 C -1.156 5.156 15 H 0.120 0.880 16 C -0.085 4.085 17 N -0.475 5.475 18 Si 0.744 3.256 19 H -0.188 1.188 20 H -0.201 1.201 21 H -0.189 1.189 22 H 0.062 0.938 23 H 0.076 0.924 24 H 0.090 0.910 25 H 0.111 0.889 26 H 0.095 0.905 27 H 0.141 0.859 28 H 0.141 0.859 29 H 0.240 0.760 30 H 0.145 0.855 31 H 0.168 0.832 32 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.471 12.437 3.851 13.252 hybrid contribution 0.258 0.236 -1.516 1.556 sum -2.213 12.673 2.335 13.075 Atomic orbital electron populations 1.21266 0.80093 1.02204 1.00858 1.58017 1.14233 1.21468 1.90858 1.20020 0.97950 0.86274 0.91579 1.20540 0.94855 0.97503 0.98284 1.20909 0.98295 0.97222 0.94634 1.21292 0.98831 1.02804 0.94424 1.18517 0.94787 0.97827 0.83802 1.84833 1.79507 1.43154 1.23654 1.21469 0.99450 0.99956 0.95850 1.21521 0.98258 0.96953 0.93170 1.00585 0.71842 0.69626 0.76453 1.93311 1.40936 1.83929 1.80843 1.93358 1.67269 1.57804 1.80954 1.30614 1.50295 1.16959 1.17759 0.88045 1.24746 0.90145 0.93364 1.00235 1.69887 1.30906 1.12770 1.33897 0.86214 0.79280 0.78280 0.81864 1.18835 1.20096 1.18865 0.93817 0.92366 0.90951 0.88902 0.90543 0.85863 0.85896 0.76040 0.85548 0.83168 0.89821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.72 10.33 59.85 0.62 2.34 16 2 N -1.01 -20.29 3.17 -123.04 -0.39 -20.68 16 3 C 0.17 2.81 5.49 -5.19 -0.03 2.78 16 4 C -0.11 -1.80 5.46 -104.60 -0.57 -2.37 16 5 C -0.09 -1.27 9.69 -39.60 -0.38 -1.66 16 6 C -0.15 -2.07 9.99 -39.43 -0.39 -2.46 16 7 C 0.09 1.35 6.71 -39.21 -0.26 1.09 16 8 O -0.50 -6.15 13.50 -19.43 -0.26 -6.41 16 9 C -0.15 -2.31 9.99 -39.43 -0.39 -2.70 16 10 C -0.08 -1.40 9.27 -39.61 -0.37 -1.77 16 11 S 2.71 71.51 4.88 -107.50 -0.52 70.98 16 12 O -1.00 -27.70 15.11 -57.17 -0.86 -28.57 16 13 O -1.00 -29.65 17.09 -57.17 -0.98 -30.63 16 14 C -1.02 -27.88 9.75 30.60 0.30 -27.59 16 15 H 0.10 2.52 7.81 -52.49 -0.41 2.11 16 16 C 0.13 3.69 5.46 -17.82 -0.10 3.59 16 17 N -0.84 -24.73 13.19 55.43 0.73 -24.00 16 18 Si 0.92 20.37 29.54 -169.99 -5.02 15.35 16 19 H -0.26 -5.62 7.11 56.52 0.40 -5.21 16 20 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 21 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 22 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.06 0.75 7.94 -51.93 -0.41 0.34 16 24 H 0.07 1.28 7.79 -51.93 -0.40 0.87 16 25 H 0.09 1.60 7.55 -51.93 -0.39 1.21 16 26 H 0.08 1.00 7.90 -51.93 -0.41 0.59 16 27 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 28 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 29 H 0.38 2.63 9.06 45.56 0.41 3.04 16 30 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 31 H 0.15 2.88 6.60 -52.49 -0.35 2.54 16 32 H 0.29 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 295.22 15.07 4.45 4.45 Total: -1.00 -35.37 295.22 -7.23 -42.60 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -2.79 Total: 5.65 kcal Atomic # 6 Polarization: -27.16 SS G_CDS: -1.58 Total: -28.74 kcal Atomic # 7 Polarization: -45.02 SS G_CDS: 0.34 Total: -44.68 kcal Atomic # 8 Polarization: -63.50 SS G_CDS: -2.10 Total: -65.61 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 16 Polarization: 71.51 SS G_CDS: -0.52 Total: 70.98 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -35.37 -7.23 -42.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083919758.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.547 kcal (2) G-P(sol) polarization free energy of solvation -35.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds