Wall clock time and date at job start Mon Mar 30 2020 04:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46501 * 120.00098 * 2 1 4 4 C 1.50697 * 109.46874 * 84.99996 * 3 2 1 5 5 C 1.38265 * 119.94517 * 269.72577 * 4 3 2 6 6 C 1.38150 * 120.05162 * 179.72908 * 5 4 3 7 7 C 1.38736 * 119.94524 * 0.56539 * 6 5 4 8 8 O 1.35901 * 120.05287 * 179.68288 * 7 6 5 9 9 C 1.38733 * 119.88625 * 359.71140 * 7 6 5 10 10 C 1.38139 * 119.94603 * 359.97438 * 9 7 6 11 11 S 1.65599 * 119.99791 * 180.02562 * 2 1 3 12 12 O 1.42099 * 106.40401 * 203.53818 * 11 2 1 13 13 O 1.42103 * 106.40122 * 336.45794 * 11 2 1 14 14 C 1.76205 * 107.21913 * 89.99801 * 11 2 1 15 15 H 1.07994 * 119.99577 * 359.97438 * 14 11 2 16 16 C 1.37875 * 119.99777 * 180.02562 * 14 11 2 17 17 N 1.31509 * 120.00309 * 359.97438 * 16 14 11 18 18 Si 1.86798 * 119.99707 * 180.02562 * 16 14 11 19 19 H 1.48506 * 109.47265 * 59.99784 * 18 16 14 20 20 H 1.48499 * 109.47305 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47277 * 299.99869 * 18 16 14 22 22 H 1.09001 * 109.47060 * 270.00243 * 1 2 3 23 23 H 1.09004 * 109.47073 * 29.99732 * 1 2 3 24 24 H 1.09000 * 109.47212 * 149.99814 * 1 2 3 25 25 H 1.09001 * 109.47135 * 205.00098 * 3 2 1 26 26 H 1.09001 * 109.46893 * 325.00392 * 3 2 1 27 27 H 1.07996 * 119.97272 * 359.97438 * 5 4 3 28 28 H 1.07997 * 120.02531 * 180.24992 * 6 5 4 29 29 H 0.96701 * 113.99830 * 270.01907 * 8 7 6 30 30 H 1.07998 * 120.02413 * 179.97438 * 9 7 6 31 31 H 1.08002 * 119.97347 * 180.02562 * 10 9 7 32 32 H 0.97001 * 120.00292 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3415 1.7656 1.4154 5 6 1.3766 2.5945 1.9573 6 6 1.5035 3.0468 3.2565 7 6 2.6061 2.6781 4.0136 8 8 2.7363 3.1270 5.2897 9 6 3.5756 1.8509 3.4655 10 6 3.4409 1.3961 2.1682 11 16 2.2930 -1.4342 -0.0006 12 8 3.5760 -1.1571 0.5439 13 8 1.4113 -2.4067 0.5434 14 6 2.5537 -1.8852 -1.6839 15 1 2.1866 -1.2498 -2.4762 16 6 3.2255 -3.0498 -1.9894 17 7 3.6721 -3.8238 -1.0245 18 14 3.5026 -3.5276 -3.7739 19 1 4.2924 -2.4690 -4.4529 20 1 4.2443 -4.8127 -3.8329 21 1 2.1917 -3.6804 -4.4547 22 1 -0.3633 0.0000 1.0277 23 1 -0.3633 0.8900 -0.5138 24 1 -0.3634 -0.8900 -0.5139 25 1 3.1859 1.1177 -0.4343 26 1 1.6502 2.0043 -0.5894 27 1 0.5212 2.8855 1.3658 28 1 0.7476 3.6910 3.6807 29 1 3.2124 3.9653 5.3651 30 1 4.4350 1.5628 4.0528 31 1 4.1952 0.7517 1.7412 32 1 4.1451 -4.6429 -1.2395 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083919758.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:57 Heat of formation + Delta-G solvation = -135.715057 kcal Electronic energy + Delta-G solvation = -18902.310365 eV Core-core repulsion = 15760.352269 eV Total energy + Delta-G solvation = -3141.958096 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.071 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.69060 -38.27485 -37.38932 -36.38405 -36.08023 -35.14526 -31.89731 -31.55280 -28.25851 -27.82576 -25.31147 -23.67501 -22.37478 -20.77018 -19.31844 -19.05867 -18.23525 -17.17655 -17.04096 -16.71439 -16.34369 -16.21722 -15.83899 -15.22494 -14.86436 -14.33649 -14.22125 -13.93494 -13.76714 -13.26877 -13.19146 -13.04738 -12.99108 -12.77129 -12.50748 -12.44197 -12.32249 -12.15272 -11.95451 -11.33073 -11.23070 -10.95105 -9.91142 -9.85514 -9.46761 -8.73701 -7.48509 0.12260 0.43883 0.46735 1.34076 1.36102 1.49178 2.20952 2.58012 2.62564 3.01782 3.31753 3.79682 3.90942 3.99508 4.11162 4.19055 4.26397 4.49139 4.63638 4.70051 4.79075 4.82833 4.98631 5.00261 5.08614 5.18729 5.32249 5.37725 5.48606 5.73011 5.90212 5.93504 6.02776 6.78267 6.88276 8.20833 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.036316 B = 0.005409 C = 0.005170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.820593 B = 5174.872434 C = 5414.897254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -1.007 6.007 3 C 0.162 3.838 4 C -0.129 4.129 5 C -0.082 4.082 6 C -0.151 4.151 7 C 0.100 3.900 8 O -0.508 6.508 9 C -0.166 4.166 10 C -0.109 4.109 11 S 2.714 3.286 12 O -1.029 7.029 13 O -1.048 7.048 14 C -1.043 5.043 15 H 0.120 0.880 16 C 0.069 3.931 17 N -0.895 5.895 18 Si 0.989 3.011 19 H -0.248 1.248 20 H -0.265 1.265 21 H -0.250 1.250 22 H 0.048 0.952 23 H 0.110 0.890 24 H 0.057 0.943 25 H 0.075 0.925 26 H 0.125 0.875 27 H 0.159 0.841 28 H 0.155 0.845 29 H 0.410 0.590 30 H 0.129 0.871 31 H 0.117 0.883 32 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.110 15.882 1.780 16.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.845 5.845 3 C 0.037 3.963 4 C -0.130 4.130 5 C -0.100 4.100 6 C -0.169 4.169 7 C 0.056 3.944 8 O -0.321 6.321 9 C -0.184 4.184 10 C -0.128 4.128 11 S 2.816 3.184 12 O -1.019 7.019 13 O -1.038 7.038 14 C -1.176 5.176 15 H 0.138 0.862 16 C -0.144 4.144 17 N -0.527 5.527 18 Si 0.807 3.193 19 H -0.172 1.172 20 H -0.189 1.189 21 H -0.173 1.173 22 H 0.066 0.934 23 H 0.128 0.872 24 H 0.075 0.925 25 H 0.094 0.906 26 H 0.143 0.857 27 H 0.177 0.823 28 H 0.173 0.827 29 H 0.269 0.731 30 H 0.147 0.853 31 H 0.135 0.865 32 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.092 14.774 2.790 15.582 hybrid contribution 0.739 -0.341 -1.042 1.322 sum -3.354 14.433 1.748 14.920 Atomic orbital electron populations 1.21563 0.77844 1.04028 1.01821 1.57498 1.15557 1.20650 1.90784 1.20308 0.97631 0.85532 0.92827 1.20559 0.95471 0.98949 0.98070 1.21240 0.98140 0.95544 0.95103 1.21657 0.98794 1.02405 0.94089 1.18595 0.94495 0.97020 0.84322 1.84767 1.79974 1.44944 1.22452 1.21565 1.00559 1.00886 0.95411 1.21404 0.98824 0.98017 0.94531 1.00192 0.71368 0.70528 0.76317 1.93273 1.42649 1.84661 1.81279 1.93288 1.68127 1.60701 1.81719 1.31006 1.50259 1.17626 1.18746 0.86175 1.26038 0.89442 0.93207 1.05665 1.69994 1.32248 1.13730 1.36706 0.85177 0.80098 0.78724 0.75282 1.17179 1.18925 1.17340 0.93367 0.87197 0.92451 0.90639 0.85744 0.82339 0.82726 0.73085 0.85256 0.86513 0.89184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.91 10.33 127.77 1.32 4.23 16 2 N -1.01 -39.72 3.17 -543.20 -1.72 -41.44 16 3 C 0.16 5.21 5.49 85.63 0.47 5.68 16 4 C -0.13 -4.08 5.46 -19.85 -0.11 -4.19 16 5 C -0.08 -1.99 9.69 22.26 0.22 -1.77 16 6 C -0.15 -3.50 9.99 22.37 0.22 -3.28 16 7 C 0.10 2.66 6.71 22.51 0.15 2.81 16 8 O -0.51 -11.18 13.50 -92.43 -1.25 -12.43 16 9 C -0.17 -5.20 9.99 22.36 0.22 -4.98 16 10 C -0.11 -3.94 9.27 22.25 0.21 -3.73 16 11 S 2.71 147.44 4.88 -56.49 -0.28 147.17 16 12 O -1.03 -60.11 15.11 -128.00 -1.93 -62.04 16 13 O -1.05 -64.39 17.09 -128.00 -2.19 -66.58 16 14 C -1.04 -57.51 9.75 67.73 0.66 -56.85 16 15 H 0.12 5.91 7.81 -2.91 -0.02 5.88 16 16 C 0.07 3.86 5.46 84.66 0.46 4.33 16 17 N -0.90 -54.04 13.19 21.45 0.28 -53.76 16 18 Si 0.99 41.16 29.54 68.60 2.03 43.18 16 19 H -0.25 -9.61 7.11 99.48 0.71 -8.91 16 20 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 21 H -0.25 -9.73 7.11 99.48 0.71 -9.02 16 22 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 23 H 0.11 2.32 7.94 -2.38 -0.02 2.30 16 24 H 0.06 1.97 7.79 -2.39 -0.02 1.95 16 25 H 0.08 2.66 7.55 -2.39 -0.02 2.64 16 26 H 0.12 2.77 7.90 -2.39 -0.02 2.75 16 27 H 0.16 2.70 8.06 -2.91 -0.02 2.68 16 28 H 0.16 2.61 8.06 -2.91 -0.02 2.59 16 29 H 0.41 4.43 9.06 -74.06 -0.67 3.76 16 30 H 0.13 3.77 8.06 -2.91 -0.02 3.74 16 31 H 0.12 4.92 6.60 -2.91 -0.02 4.90 16 32 H 0.30 16.21 8.31 -92.71 -0.77 15.44 16 Total: -1.00 -80.45 295.22 -0.76 -81.21 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: 0.47 Total: 22.44 kcal Atomic # 6 Polarization: -61.57 SS G_CDS: 3.82 Total: -57.75 kcal Atomic # 7 Polarization: -93.76 SS G_CDS: -1.44 Total: -95.20 kcal Atomic # 8 Polarization: -135.68 SS G_CDS: -5.37 Total: -141.05 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.18 kcal Atomic # 16 Polarization: 147.44 SS G_CDS: -0.28 Total: 147.17 kcal Total: -80.45 -0.76 -81.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083919758.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.508 kcal (2) G-P(sol) polarization free energy of solvation -80.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds