Wall clock time and date at job start Mon Mar 30 2020 04:56:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31193 * 1
3 3 Si 1.86796 * 119.99762 * 2 1
4 4 H 1.48504 * 109.47099 * 239.99931 * 3 2 1
5 5 H 1.48502 * 109.47482 * 0.02562 * 3 2 1
6 6 H 1.48505 * 109.47315 * 120.00533 * 3 2 1
7 7 C 1.39551 * 120.00153 * 180.02562 * 2 1 3
8 8 H 1.08008 * 120.00301 * 179.97438 * 7 2 1
9 9 C 1.41195 * 120.00292 * 0.02562 * 7 2 1
10 10 C 1.41807 * 126.63079 * 0.02562 * 9 7 2
11 11 N 1.30259 * 108.25403 * 179.74051 * 10 9 7
12 12 N 1.39850 * 109.54164 * 0.38640 * 11 10 9
13 13 C 1.46498 * 125.70367 * 179.86940 * 12 11 10
14 14 H 1.09005 * 109.53345 * 179.32779 * 13 12 11
15 15 C 1.53871 * 109.64661 * 299.69393 * 13 12 11
16 16 C 1.55049 * 106.66366 * 167.00517 * 15 13 12
17 17 S 1.83320 * 102.55122 * 317.62293 * 16 15 13
18 18 O 1.42097 * 109.31856 * 269.75820 * 17 16 15
19 19 O 1.42106 * 109.49829 * 136.59981 * 17 16 15
20 20 C 1.54171 * 109.64396 * 58.96959 * 13 12 11
21 21 C 1.35163 * 108.59607 * 359.60789 * 12 11 10
22 22 N 1.37726 * 126.56459 * 180.26096 * 21 12 11
23 23 H 0.96993 * 120.00208 * 359.97438 * 1 2 3
24 24 H 1.08000 * 125.87222 * 359.97438 * 10 9 7
25 25 H 1.09002 * 110.02823 * 286.32369 * 15 13 12
26 26 H 1.09000 * 110.03111 * 47.69359 * 15 13 12
27 27 H 1.09009 * 110.78664 * 75.86305 * 16 15 13
28 28 H 1.08993 * 110.79256 * 199.31653 * 16 15 13
29 29 H 1.08994 * 110.31672 * 331.14251 * 20 13 12
30 30 H 1.09000 * 110.32011 * 93.33548 * 20 13 12
31 31 H 0.97001 * 119.99521 * 0.02562 * 22 21 12
32 32 H 0.96999 * 120.00178 * 179.97438 * 22 21 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3119 0.0000 0.0000
3 14 2.2458 1.6177 0.0000
4 1 3.0996 1.6964 -1.2125
5 1 1.2809 2.7465 0.0006
6 1 3.0997 1.6964 1.2125
7 6 2.0097 -1.2085 -0.0005
8 1 3.0898 -1.2086 -0.0010
9 6 1.3038 -2.4314 -0.0016
10 6 -0.1047 -2.5952 -0.0028
11 7 -0.3671 -3.8711 -0.0092
12 7 0.8296 -4.5948 -0.0036
13 6 0.9457 -6.0551 -0.0053
14 1 1.9986 -6.3371 -0.0118
15 6 0.2639 -6.6298 1.2488
16 6 0.1293 -8.1575 1.0210
17 16 -0.4084 -8.2536 -0.7289
18 8 -1.8280 -8.2292 -0.7866
19 8 0.3091 -9.2872 -1.3895
20 6 0.2476 -6.6290 -1.2544
21 6 1.8614 -3.7216 -0.0021
22 7 3.2023 -4.0359 -0.0020
23 1 -0.4850 0.8400 0.0004
24 1 -0.8345 -1.7991 -0.0026
25 1 0.8770 -6.4361 2.1289
26 1 -0.7222 -6.1830 1.3755
27 1 1.0893 -8.6552 1.1584
28 1 -0.6259 -8.5822 1.6823
29 1 -0.5665 -5.9752 -1.5670
30 1 0.9655 -6.7549 -2.0649
31 1 3.4827 -4.9645 -0.0034
32 1 3.8662 -3.3288 -0.0013
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000087579879.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:56:06
Heat of formation + Delta-G solvation = -14.432300 kcal
Electronic energy + Delta-G solvation = -18851.719689 eV
Core-core repulsion = 15747.313559 eV
Total energy + Delta-G solvation = -3104.406130 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 271.078 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-41.30319 -38.14213 -37.58485 -37.06235 -35.03162 -35.02294 -32.04359 -30.16237
-29.46049 -26.53138 -25.55142 -23.15943 -21.46484 -20.49188 -19.85961 -18.92080
-18.19141 -17.65462 -17.12597 -16.96645 -16.66128 -16.16166 -15.55845 -15.28405
-15.01931 -14.84530 -14.45549 -13.61777 -13.35908 -13.30875 -13.19410 -13.11882
-13.06029 -12.75723 -12.68198 -12.50359 -12.23925 -11.92415 -11.68322 -11.44470
-11.32094 -10.99875 -10.60070 -9.25840 -8.38863 -8.16501 -5.65903 -0.98218
1.38101 1.47896 1.49014 1.58213 1.70219 2.00622 2.43302 2.53430
2.58944 3.03124 3.24655 3.39394 3.54585 3.63415 3.72433 3.77827
3.99480 4.39600 4.56684 4.76056 4.81445 4.92437 5.01675 5.26669
5.36867 5.86294 6.13121 6.27575 6.72964 7.05104 7.07999 7.34430
7.46290 7.77451 8.85555
Molecular weight = 271.08amu
Principal moments of inertia in cm(-1)
A = 0.044783 B = 0.004605 C = 0.004413
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 625.082749 B = 6078.448271 C = 6343.264254
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.887 5.887
2 C 0.009 3.991
3 Si 0.978 3.022
4 H -0.270 1.270
5 H -0.284 1.284
6 H -0.268 1.268
7 C -0.451 4.451
8 H 0.066 0.934
9 C -0.135 4.135
10 C 0.029 3.971
11 N -0.372 5.372
12 N -0.392 5.392
13 C 0.173 3.827
14 H 0.137 0.863
15 C -0.131 4.131
16 C -0.548 4.548
17 S 2.414 3.586
18 O -0.976 6.976
19 O -0.964 6.964
20 C -0.608 4.608
21 C 0.236 3.764
22 N -0.841 5.841
23 H 0.269 0.731
24 H 0.182 0.818
25 H 0.115 0.885
26 H 0.080 0.920
27 H 0.178 0.822
28 H 0.165 0.835
29 H 0.126 0.874
30 H 0.156 0.844
31 H 0.399 0.601
32 H 0.412 0.588
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.568 -14.010 2.649 15.307
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.522 5.522
2 C -0.195 4.195
3 Si 0.803 3.197
4 H -0.195 1.195
5 H -0.209 1.209
6 H -0.193 1.193
7 C -0.487 4.487
8 H 0.084 0.916
9 C -0.149 4.149
10 C -0.153 4.153
11 N -0.197 5.197
12 N -0.183 5.183
13 C 0.069 3.931
14 H 0.155 0.845
15 C -0.171 4.171
16 C -0.681 4.681
17 S 2.599 3.401
18 O -0.974 6.974
19 O -0.961 6.961
20 C -0.737 4.737
21 C 0.012 3.988
22 N -0.394 5.394
23 H 0.079 0.921
24 H 0.199 0.801
25 H 0.134 0.866
26 H 0.099 0.901
27 H 0.196 0.804
28 H 0.183 0.817
29 H 0.144 0.856
30 H 0.174 0.826
31 H 0.229 0.771
32 H 0.243 0.757
Dipole moment (debyes) X Y Z Total
from point charges 3.898 -15.492 2.090 16.111
hybrid contribution 1.368 2.338 0.135 2.712
sum 5.266 -13.154 2.226 14.343
Atomic orbital electron populations
1.69618 1.08072 1.27921 1.46620 1.26253 0.95566 1.03140 0.94529
0.85291 0.78091 0.77326 0.78971 1.19488 1.20907 1.19300 1.18611
0.93264 0.90022 1.46775 0.91564 1.17796 0.92129 0.90960 1.14061
1.24618 0.97764 0.92449 1.00469 1.76567 1.04045 1.05867 1.33264
1.47742 1.02589 1.03918 1.64069 1.21606 1.02402 0.76857 0.92266
0.84533 1.22567 1.04041 0.91614 0.98835 1.30449 1.15687 1.01962
1.19989 1.08265 0.74728 0.76320 0.80744 1.93571 1.29867 1.86914
1.87014 1.93567 1.74712 1.53531 1.74301 1.30962 1.13000 1.22226
1.07502 1.18248 0.82812 0.89407 1.08362 1.40584 1.00481 1.10115
1.88257 0.92058 0.80138 0.86637 0.90093 0.80399 0.81705 0.85562
0.82635 0.77106 0.75732
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -48.90 10.32 21.77 0.22 -48.68 16
2 C 0.01 0.46 5.49 85.11 0.47 0.93 16
3 Si 0.98 40.90 29.56 68.60 2.03 42.93 16
4 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16
5 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16
6 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16
7 C -0.45 -24.04 9.24 23.31 0.22 -23.82 16
8 H 0.07 3.28 7.36 -2.91 -0.02 3.26 16
9 C -0.14 -7.09 5.96 -21.11 -0.13 -7.22 16
10 C 0.03 1.58 10.90 85.81 0.94 2.52 16
11 N -0.37 -17.71 11.87 -56.02 -0.67 -18.38 16
12 N -0.39 -15.17 3.29 -318.96 -1.05 -16.22 16
13 C 0.17 4.36 3.37 45.68 0.15 4.51 16
14 H 0.14 2.35 6.79 -2.38 -0.02 2.33 16
15 C -0.13 -2.68 6.05 31.59 0.19 -2.49 16
16 C -0.55 -6.77 7.31 72.68 0.53 -6.24 16
17 S 2.41 49.81 6.10 -56.49 -0.34 49.46 16
18 O -0.98 -29.26 18.14 -127.47 -2.31 -31.57 16
19 O -0.96 -23.96 18.15 -127.47 -2.31 -26.28 16
20 C -0.61 -14.59 6.92 72.38 0.50 -14.09 16
21 C 0.24 9.95 8.06 133.00 1.07 11.02 16
22 N -0.84 -25.97 9.03 -53.76 -0.49 -26.46 16
23 H 0.27 13.94 8.30 -92.71 -0.77 13.17 16
24 H 0.18 10.44 5.76 -2.91 -0.02 10.42 16
25 H 0.12 2.06 8.14 -2.39 -0.02 2.05 16
26 H 0.08 2.10 8.04 -2.39 -0.02 2.08 16
27 H 0.18 0.92 8.14 -2.38 -0.02 0.90 16
28 H 0.17 1.45 8.14 -2.39 -0.02 1.43 16
29 H 0.13 3.88 7.72 -2.39 -0.02 3.86 16
30 H 0.16 3.06 8.14 -2.39 -0.02 3.04 16
31 H 0.40 8.73 7.63 -92.71 -0.71 8.02 16
32 H 0.41 12.44 8.31 -92.71 -0.77 11.67 16
Total: -1.00 -77.87 283.55 -1.27 -79.14
By element:
Atomic # 1 Polarization: 31.22 SS G_CDS: -0.30 Total: 30.93 kcal
Atomic # 6 Polarization: -38.83 SS G_CDS: 3.94 Total: -34.89 kcal
Atomic # 7 Polarization: -107.75 SS G_CDS: -1.98 Total: -109.73 kcal
Atomic # 8 Polarization: -53.22 SS G_CDS: -4.63 Total: -57.85 kcal
Atomic # 14 Polarization: 40.90 SS G_CDS: 2.03 Total: 42.93 kcal
Atomic # 16 Polarization: 49.81 SS G_CDS: -0.34 Total: 49.46 kcal
Total: -77.87 -1.27 -79.14 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000087579879.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 64.709 kcal
(2) G-P(sol) polarization free energy of solvation -77.868 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.158 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.274 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.142 kcal
(6) G-S(sol) free energy of system = (1) + (5) -14.432 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds