Wall clock time and date at job start Mon Mar 30 2020 04:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42899 * 114.00085 * 2 1 4 4 C 1.50696 * 109.47355 * 180.02562 * 3 2 1 5 5 N 1.28619 * 124.71485 * 89.99771 * 4 3 2 6 6 C 1.33600 * 115.77231 * 179.97438 * 5 4 3 7 7 C 1.47117 * 123.15468 * 180.02562 * 6 5 4 8 8 O 1.21557 * 119.99965 * 180.02562 * 7 6 5 9 9 O 1.34793 * 119.99984 * 0.02562 * 7 6 5 10 10 C 1.45206 * 116.99924 * 180.02562 * 9 7 6 11 11 H 1.08996 * 109.46708 * 30.00489 * 10 9 7 12 12 C 1.52997 * 109.47147 * 269.99831 * 10 9 7 13 13 C 1.50699 * 109.47021 * 149.99932 * 10 9 7 14 14 H 1.08003 * 119.99962 * 0.02562 * 13 10 9 15 15 C 1.37874 * 120.00270 * 179.97438 * 13 10 9 16 16 N 1.31516 * 119.99500 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 120.00390 * 179.97438 * 15 13 10 18 18 H 1.48501 * 109.46950 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47111 * 120.00373 * 17 15 13 20 20 H 1.48500 * 109.47074 * 240.00166 * 17 15 13 21 21 C 1.35288 * 113.69025 * 0.26273 * 6 5 4 22 22 S 1.70769 * 124.70503 * 269.97664 * 4 3 2 23 23 H 1.09000 * 109.47408 * 300.00665 * 1 2 3 24 24 H 1.09005 * 109.46986 * 60.00235 * 1 2 3 25 25 H 1.08997 * 109.47223 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47185 * 59.99433 * 3 2 1 27 27 H 1.09001 * 109.46791 * 299.99864 * 3 2 1 28 28 H 1.09002 * 109.47153 * 179.97438 * 12 10 9 29 29 H 1.09001 * 109.46832 * 60.00119 * 12 10 9 30 30 H 1.09004 * 109.47261 * 300.00100 * 12 10 9 31 31 H 0.97002 * 119.99804 * 180.02562 * 16 15 13 32 32 H 1.07999 * 125.59114 * 179.73456 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 -0.0006 5 7 4.2422 1.1288 -1.0582 6 6 5.5580 1.0252 -0.8511 7 6 6.5408 0.9481 -1.9431 8 8 7.7257 0.8542 -1.6889 9 8 6.1272 0.9816 -3.2256 10 6 7.1521 0.9006 -4.2510 11 1 7.9942 0.3179 -3.8777 12 6 7.6263 2.3100 -4.6106 13 6 6.5841 0.2336 -5.4773 14 1 5.5557 -0.0960 -5.4853 15 6 7.3771 0.0451 -6.5893 16 7 8.6293 0.4470 -6.5797 17 14 6.6733 -0.7822 -8.1091 18 1 5.2522 -1.1380 -7.8657 19 1 6.7597 0.1476 -9.2637 20 1 7.4485 -2.0136 -8.4061 21 6 5.9014 0.9926 0.4571 22 16 4.4823 1.1101 1.4028 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 1.6885 1.8464 0.8899 27 1 1.6886 1.8463 -0.8900 28 1 8.3960 2.2492 -5.3800 29 1 8.0371 2.7924 -3.7236 30 1 6.7841 2.8926 -4.9839 31 1 9.1872 0.3147 -7.3621 32 1 6.9074 0.9082 0.8409 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113695319.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:10 Heat of formation + Delta-G solvation = -85.107642 kcal Electronic energy + Delta-G solvation = -18051.195560 eV Core-core repulsion = 14911.431966 eV Total energy + Delta-G solvation = -3139.763594 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.071 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.30922 -38.86989 -37.89574 -35.69233 -33.20263 -31.71586 -29.57126 -28.32101 -26.34917 -25.44152 -25.16144 -22.00459 -20.66317 -19.63173 -18.53075 -16.83916 -16.78023 -16.24695 -16.02872 -15.85023 -15.34778 -15.24394 -14.49302 -14.03077 -13.90629 -13.10842 -12.85331 -12.46532 -12.18046 -12.06913 -11.84387 -11.69328 -11.19201 -11.04145 -10.80057 -10.32041 -10.25407 -10.06184 -9.95012 -9.78979 -9.72641 -9.52098 -9.03118 -8.85643 -8.45538 -6.14429 -4.20342 0.39347 1.10119 1.47674 1.97515 3.27480 3.32340 3.35185 3.41043 3.60017 3.72665 4.19369 4.39845 4.66512 4.98972 5.04608 5.07966 5.15781 5.18815 5.24649 5.42460 5.44729 6.00398 6.65307 6.76434 6.92175 6.93066 7.13573 7.44401 7.62985 7.74415 7.94170 8.16936 8.62576 8.92106 9.44595 10.93365 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.021235 B = 0.004639 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.233229 B = 6034.801752 C = 7096.220873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.382 6.382 3 C 0.143 3.857 4 C 0.012 3.988 5 N -0.396 5.396 6 C 0.040 3.960 7 C 0.532 3.468 8 O -0.512 6.512 9 O -0.330 6.330 10 C 0.212 3.788 11 H 0.048 0.952 12 C -0.154 4.154 13 C -0.517 4.517 14 H 0.071 0.929 15 C 0.062 3.938 16 N -0.891 5.891 17 Si 0.912 3.088 18 H -0.270 1.270 19 H -0.281 1.281 20 H -0.282 1.282 21 C -0.221 4.221 22 S 0.222 5.778 23 H 0.043 0.957 24 H 0.047 0.953 25 H 0.090 0.910 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.101 0.899 29 H 0.016 0.984 30 H 0.038 0.962 31 H 0.265 0.735 32 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.232 2.733 16.948 21.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.301 6.301 3 C 0.063 3.937 4 C -0.268 4.268 5 N -0.113 5.113 6 C -0.094 4.094 7 C 0.373 3.627 8 O -0.402 6.402 9 O -0.245 6.245 10 C 0.160 3.840 11 H 0.066 0.934 12 C -0.212 4.212 13 C -0.555 4.555 14 H 0.089 0.911 15 C -0.140 4.140 16 N -0.529 5.529 17 Si 0.739 3.261 18 H -0.194 1.194 19 H -0.207 1.207 20 H -0.208 1.208 21 C -0.363 4.363 22 S 0.478 5.522 23 H 0.062 0.938 24 H 0.065 0.935 25 H 0.108 0.892 26 H 0.092 0.908 27 H 0.103 0.897 28 H 0.119 0.881 29 H 0.035 0.965 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -13.077 2.580 17.352 21.880 hybrid contribution 0.425 -0.245 -1.617 1.690 sum -12.652 2.334 15.735 20.325 Atomic orbital electron populations 1.22798 0.80064 1.03298 1.00281 1.87974 1.20236 1.26347 1.95506 1.20762 0.84273 0.86065 1.02596 1.26668 1.00859 1.07598 0.91721 1.66968 1.03130 1.10701 1.30467 1.19739 0.89499 1.08152 0.92026 1.19729 0.85587 0.73551 0.83880 1.90817 1.17248 1.46938 1.85224 1.86687 1.43732 1.80408 1.13659 1.20755 0.85706 0.94981 0.82596 0.93423 1.22167 1.01786 0.96656 1.00611 1.21075 0.99019 1.38749 0.96664 0.91110 1.24882 0.94767 0.95566 0.98774 1.69912 1.06283 1.46449 1.30240 0.86206 0.79292 0.78929 0.81654 1.19424 1.20720 1.20754 1.26718 1.06371 1.06556 0.96632 1.82611 0.94661 1.63581 1.11301 0.93828 0.93467 0.89173 0.90797 0.89666 0.88104 0.96525 0.94307 0.92491 0.78875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.38 -4.46 10.69 -35.23 -0.38 -4.84 16 3 C 0.14 1.49 6.51 36.00 0.23 1.72 16 4 C 0.01 0.16 6.97 -13.63 -0.09 0.06 16 5 N -0.40 -7.22 10.60 -8.53 -0.09 -7.31 16 6 C 0.04 0.75 6.71 -84.55 -0.57 0.19 16 7 C 0.53 12.43 7.91 34.33 0.27 12.71 16 8 O -0.51 -12.64 15.97 -19.31 -0.31 -12.94 16 9 O -0.33 -8.69 9.80 -40.74 -0.40 -9.09 16 10 C 0.21 6.00 2.56 -27.88 -0.07 5.92 16 11 H 0.05 1.46 7.16 -51.93 -0.37 1.09 16 12 C -0.15 -4.08 9.33 37.16 0.35 -3.74 16 13 C -0.52 -15.18 8.90 -34.44 -0.31 -15.48 16 14 H 0.07 2.08 7.81 -52.48 -0.41 1.67 16 15 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 16 N -0.89 -25.87 11.32 55.43 0.63 -25.24 16 17 Si 0.91 21.72 29.54 -169.99 -5.02 16.70 16 18 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 C -0.22 -3.18 10.62 29.68 0.32 -2.86 16 22 S 0.22 2.35 22.92 -107.50 -2.46 -0.11 16 23 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 24 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.10 2.80 6.07 -51.93 -0.32 2.49 16 29 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 32 H 0.19 2.42 8.03 -52.49 -0.42 2.00 16 LS Contribution 302.34 15.07 4.56 4.56 Total: -1.00 -34.10 302.34 -5.94 -40.04 By element: Atomic # 1 Polarization: 0.32 SS G_CDS: -3.61 Total: -3.29 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: 1.15 Total: 1.53 kcal Atomic # 7 Polarization: -33.09 SS G_CDS: 0.54 Total: -32.56 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: -1.08 Total: -26.87 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: 2.35 SS G_CDS: -2.46 Total: -0.11 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -34.10 -5.94 -40.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113695319.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.064 kcal (2) G-P(sol) polarization free energy of solvation -34.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds