Wall clock time and date at job start Mon Mar 30 2020 05:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86799 * 120.00023 * 2 1 4 4 H 1.48489 * 109.47437 * 270.00483 * 3 2 1 5 5 H 1.48500 * 109.46931 * 30.00641 * 3 2 1 6 6 H 1.48503 * 109.46655 * 150.00157 * 3 2 1 7 7 C 1.38806 * 120.00121 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99918 * 359.97438 * 7 2 1 9 9 S 1.76193 * 120.00056 * 179.97438 * 7 2 1 10 10 C 1.81002 * 100.00049 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47156 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99781 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99795 * 179.97438 * 11 10 9 14 14 C 1.48347 * 128.19589 * 359.68433 * 13 11 10 15 15 C 1.54869 * 104.08637 * 138.28023 * 14 13 11 16 16 H 1.08996 * 111.86535 * 264.24906 * 15 14 13 17 17 C 1.53568 * 108.95346 * 139.47642 * 15 14 13 18 18 C 1.53962 * 106.03026 * 229.11444 * 17 15 14 19 19 C 1.53964 * 104.88848 * 29.56001 * 18 17 15 20 20 H 1.08998 * 110.13873 * 211.30121 * 19 18 17 21 21 O 1.42897 * 110.13901 * 89.57606 * 19 18 17 22 22 C 1.53560 * 106.02717 * 330.43837 * 19 18 17 23 23 H 1.09008 * 112.31398 * 255.39609 * 22 19 18 24 24 C 1.48348 * 128.19093 * 179.97438 * 13 11 10 25 25 H 0.96999 * 120.00138 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47115 * 60.00094 * 10 9 7 27 27 H 1.09001 * 109.46925 * 300.00251 * 10 9 7 28 28 H 1.09001 * 110.47065 * 257.01595 * 14 13 11 29 29 H 1.09002 * 110.46690 * 19.61147 * 14 13 11 30 30 H 1.08996 * 110.13882 * 348.24861 * 17 15 14 31 31 H 1.08992 * 110.14183 * 109.97413 * 17 15 14 32 32 H 1.08992 * 110.35720 * 148.40997 * 18 17 15 33 33 H 1.09001 * 110.35606 * 270.71097 * 18 17 15 34 34 H 0.96701 * 113.99868 * 63.39644 * 21 19 18 35 35 H 1.08998 * 110.47067 * 340.38646 * 24 13 11 36 36 H 1.09008 * 110.46934 * 102.85469 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.3999 5 1 1.4478 2.6526 0.7002 6 1 3.5479 1.4400 0.7000 7 6 2.0104 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 16 3.7723 -1.2021 -0.0012 10 6 4.0866 -2.9846 -0.0025 11 6 5.5731 -3.2325 -0.0026 12 8 6.3440 -2.2963 -0.0014 13 7 6.0457 -4.4948 -0.0030 14 6 5.2756 -5.7626 0.0030 15 6 6.0330 -6.6685 -0.9991 16 1 5.5884 -6.6339 -1.9937 17 6 6.0909 -8.0960 -0.4358 18 6 7.5604 -8.5399 -0.5529 19 6 8.3770 -7.2399 -0.4359 20 1 9.2930 -7.3181 -1.0214 21 8 8.6882 -6.9760 0.9335 22 6 7.4830 -6.1256 -0.9992 23 1 7.7954 -5.8075 -1.9940 24 6 7.4593 -4.9449 -0.0037 25 1 -0.4850 0.8400 0.0004 26 1 3.6434 -3.4310 -0.8927 27 1 3.6440 -3.4322 0.8873 28 1 5.2789 -6.2059 0.9988 29 1 4.2538 -5.5895 -0.3347 30 1 5.7798 -8.1001 0.6088 31 1 5.4515 -8.7566 -1.0211 32 1 7.8161 -9.2224 0.2575 33 1 7.7377 -9.0134 -1.5186 34 1 9.2510 -7.6460 1.3451 35 1 8.1142 -4.1439 -0.3467 36 1 7.7540 -5.2772 0.9917 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156507165.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:16 Heat of formation + Delta-G solvation = -83.338948 kcal Electronic energy + Delta-G solvation = -18715.271399 eV Core-core repulsion = 15711.417596 eV Total energy + Delta-G solvation = -3003.853803 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.58310 -38.51420 -36.26937 -34.08683 -32.41430 -30.84347 -29.58464 -28.48459 -25.67788 -25.50037 -23.75387 -21.24489 -19.43197 -19.17626 -17.79461 -17.45348 -16.80023 -16.26782 -15.83546 -15.07004 -14.86365 -14.71203 -14.05045 -13.70411 -13.32477 -13.22303 -13.01742 -12.78349 -12.67641 -12.08925 -11.91563 -11.63698 -11.23633 -11.16134 -10.98422 -10.95780 -10.89844 -10.79738 -10.55532 -10.22589 -9.82811 -9.41752 -8.97847 -8.52970 -8.45991 -6.88787 -6.26588 -3.97939 2.74574 3.02810 3.25690 3.35675 3.53524 3.63934 3.76759 3.99345 4.27720 4.35889 4.50636 4.68646 4.85046 4.94028 5.00256 5.04475 5.12578 5.19451 5.22737 5.30476 5.37709 5.50329 5.56192 5.62944 5.76126 5.76359 5.83128 5.93780 6.04354 6.05961 6.20238 6.38679 7.35172 7.75692 7.96570 8.43832 8.53029 9.19767 10.82680 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.044504 B = 0.003959 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.006213 B = 7070.266020 C = 7512.798595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.096 3.904 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.117 4.117 11 C 0.552 3.448 12 O -0.521 6.521 13 N -0.631 5.631 14 C 0.106 3.894 15 C -0.102 4.102 16 H 0.090 0.910 17 C -0.113 4.113 18 C -0.152 4.152 19 C 0.108 3.892 20 H 0.061 0.939 21 O -0.556 6.556 22 C -0.100 4.100 23 H 0.093 0.907 24 C 0.112 3.888 25 H 0.270 0.730 26 H 0.095 0.905 27 H 0.096 0.904 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.374 0.626 35 H 0.076 0.924 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.620 -20.168 -1.186 25.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.668 4.668 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.267 4.267 11 C 0.341 3.659 12 O -0.396 6.396 13 N -0.367 5.367 14 C -0.017 4.017 15 C -0.122 4.122 16 H 0.109 0.891 17 C -0.151 4.151 18 C -0.190 4.190 19 C 0.049 3.951 20 H 0.079 0.921 21 O -0.363 6.363 22 C -0.119 4.119 23 H 0.111 0.889 24 C -0.010 4.010 25 H 0.080 0.920 26 H 0.113 0.887 27 H 0.114 0.886 28 H 0.093 0.907 29 H 0.100 0.900 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.222 0.778 35 H 0.094 0.906 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 16.163 -17.997 -1.288 24.224 hybrid contribution -0.553 -0.962 -0.029 1.110 sum 15.610 -18.960 -1.317 24.594 Atomic orbital electron populations 1.69940 1.05911 1.27742 1.48195 1.24705 0.94440 0.98944 0.93168 0.86735 0.81938 0.83259 0.79941 1.19205 1.19938 1.15892 1.22320 0.88277 0.97532 1.58681 0.89418 1.84783 1.09240 1.00176 1.97409 1.23246 0.93845 1.04067 1.05580 1.19918 0.90406 0.80463 0.75156 1.90698 1.58913 1.41105 1.48864 1.49132 1.07923 1.04780 1.74882 1.22741 0.96220 0.83781 0.98965 1.22714 0.95210 0.94645 0.99616 0.89148 1.22099 0.96267 0.95063 1.01627 1.22876 0.96203 0.97576 1.02360 1.22141 0.96526 0.93466 0.83014 0.92141 1.86544 1.72943 1.51765 1.25045 1.22703 0.94484 0.95184 0.99524 0.88852 1.22308 0.83216 0.94784 1.00709 0.91961 0.88678 0.88618 0.90675 0.90041 0.90896 0.91340 0.90940 0.90838 0.77810 0.90583 0.88395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.91 13.97 55.49 0.78 -26.13 16 2 C 0.10 2.85 5.50 -17.43 -0.10 2.76 16 3 Si 0.86 22.17 27.74 -169.99 -4.71 17.45 16 4 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.23 -6.10 6.74 56.52 0.38 -5.71 16 7 C -0.52 -15.31 10.04 30.94 0.31 -15.00 16 8 H 0.09 2.68 8.03 -52.48 -0.42 2.26 16 9 S -0.14 -3.75 18.55 -107.50 -1.99 -5.74 16 10 C -0.12 -2.42 5.14 36.01 0.18 -2.24 16 11 C 0.55 10.94 7.94 -10.98 -0.09 10.86 16 12 O -0.52 -12.26 16.15 5.56 0.09 -12.17 16 13 N -0.63 -9.66 3.31 -168.63 -0.56 -10.22 16 14 C 0.11 1.22 6.46 -2.04 -0.01 1.21 16 15 C -0.10 -0.93 3.95 -88.37 -0.35 -1.28 16 16 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 17 C -0.11 -0.79 6.37 -25.94 -0.17 -0.95 16 18 C -0.15 -0.88 6.55 -25.73 -0.17 -1.05 16 19 C 0.11 0.77 4.15 -25.94 -0.11 0.67 16 20 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 21 O -0.56 -4.33 10.77 -35.23 -0.38 -4.71 16 22 C -0.10 -0.96 3.93 -88.60 -0.35 -1.31 16 23 H 0.09 0.86 8.14 -51.92 -0.42 0.44 16 24 C 0.11 1.48 6.38 -2.26 -0.01 1.46 16 25 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 26 H 0.09 1.84 7.99 -51.92 -0.41 1.42 16 27 H 0.10 1.87 8.14 -51.92 -0.42 1.45 16 28 H 0.08 0.80 7.22 -51.93 -0.37 0.43 16 29 H 0.08 0.92 7.32 -51.93 -0.38 0.54 16 30 H 0.07 0.54 7.13 -51.93 -0.37 0.17 16 31 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.35 8.11 -51.93 -0.42 -0.07 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.37 1.34 9.11 45.56 0.42 1.76 16 35 H 0.08 1.11 7.88 -51.93 -0.41 0.70 16 36 H 0.10 1.30 5.84 -51.92 -0.30 1.00 16 LS Contribution 303.63 15.07 4.58 4.58 Total: -1.00 -35.27 303.63 -7.43 -42.70 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -4.37 Total: -0.87 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: -0.85 Total: -4.88 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: 0.22 Total: -36.36 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.29 Total: -16.88 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.71 Total: 17.45 kcal Atomic # 16 Polarization: -3.75 SS G_CDS: -1.99 Total: -5.74 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -35.27 -7.43 -42.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156507165.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.638 kcal (2) G-P(sol) polarization free energy of solvation -35.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds