Wall clock time and date at job start Mon Mar 30 2020 05:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86799 * 120.00023 * 2 1 4 4 H 1.48489 * 109.47437 * 270.00483 * 3 2 1 5 5 H 1.48500 * 109.46931 * 30.00641 * 3 2 1 6 6 H 1.48503 * 109.46655 * 150.00157 * 3 2 1 7 7 C 1.38806 * 120.00121 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99918 * 359.97438 * 7 2 1 9 9 S 1.76193 * 120.00056 * 179.97438 * 7 2 1 10 10 C 1.81002 * 100.00049 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47156 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99781 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99795 * 179.97438 * 11 10 9 14 14 C 1.48347 * 128.19589 * 359.68433 * 13 11 10 15 15 C 1.54869 * 104.08637 * 138.28023 * 14 13 11 16 16 H 1.08996 * 111.86535 * 264.24906 * 15 14 13 17 17 C 1.53568 * 108.95346 * 139.47642 * 15 14 13 18 18 C 1.53962 * 106.03026 * 229.11444 * 17 15 14 19 19 C 1.53964 * 104.88848 * 29.56001 * 18 17 15 20 20 H 1.08998 * 110.13873 * 211.30121 * 19 18 17 21 21 O 1.42897 * 110.13901 * 89.57606 * 19 18 17 22 22 C 1.53560 * 106.02717 * 330.43837 * 19 18 17 23 23 H 1.09008 * 112.31398 * 255.39609 * 22 19 18 24 24 C 1.48348 * 128.19093 * 179.97438 * 13 11 10 25 25 H 0.96999 * 120.00138 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47115 * 60.00094 * 10 9 7 27 27 H 1.09001 * 109.46925 * 300.00251 * 10 9 7 28 28 H 1.09001 * 110.47065 * 257.01595 * 14 13 11 29 29 H 1.09002 * 110.46690 * 19.61147 * 14 13 11 30 30 H 1.08996 * 110.13882 * 348.24861 * 17 15 14 31 31 H 1.08992 * 110.14183 * 109.97413 * 17 15 14 32 32 H 1.08992 * 110.35720 * 148.40997 * 18 17 15 33 33 H 1.09001 * 110.35606 * 270.71097 * 18 17 15 34 34 H 0.96701 * 113.99868 * 63.39644 * 21 19 18 35 35 H 1.08998 * 110.47067 * 340.38646 * 24 13 11 36 36 H 1.09008 * 110.46934 * 102.85469 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.3999 5 1 1.4478 2.6526 0.7002 6 1 3.5479 1.4400 0.7000 7 6 2.0104 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 16 3.7723 -1.2021 -0.0012 10 6 4.0866 -2.9846 -0.0025 11 6 5.5731 -3.2325 -0.0026 12 8 6.3440 -2.2963 -0.0014 13 7 6.0457 -4.4948 -0.0030 14 6 5.2756 -5.7626 0.0030 15 6 6.0330 -6.6685 -0.9991 16 1 5.5884 -6.6339 -1.9937 17 6 6.0909 -8.0960 -0.4358 18 6 7.5604 -8.5399 -0.5529 19 6 8.3770 -7.2399 -0.4359 20 1 9.2930 -7.3181 -1.0214 21 8 8.6882 -6.9760 0.9335 22 6 7.4830 -6.1256 -0.9992 23 1 7.7954 -5.8075 -1.9940 24 6 7.4593 -4.9449 -0.0037 25 1 -0.4850 0.8400 0.0004 26 1 3.6434 -3.4310 -0.8927 27 1 3.6440 -3.4322 0.8873 28 1 5.2789 -6.2059 0.9988 29 1 4.2538 -5.5895 -0.3347 30 1 5.7798 -8.1001 0.6088 31 1 5.4515 -8.7566 -1.0211 32 1 7.8161 -9.2224 0.2575 33 1 7.7377 -9.0134 -1.5186 34 1 9.2510 -7.6460 1.3451 35 1 8.1142 -4.1439 -0.3467 36 1 7.7540 -5.2772 0.9917 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156507165.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:16 Heat of formation + Delta-G solvation = -109.347540 kcal Electronic energy + Delta-G solvation = -18716.399216 eV Core-core repulsion = 15711.417596 eV Total energy + Delta-G solvation = -3004.981620 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.52635 -39.80330 -37.13703 -34.94729 -34.69217 -32.06665 -30.52306 -29.62628 -27.88042 -26.36757 -24.84121 -21.83838 -20.70142 -20.18677 -19.54373 -18.41673 -17.94225 -17.25740 -17.15322 -16.75566 -16.33320 -16.03973 -15.55420 -14.91627 -14.72289 -14.44384 -14.17905 -13.85699 -13.51265 -13.39743 -13.25883 -13.06534 -13.02320 -12.69720 -12.31266 -11.90952 -11.86980 -11.69292 -11.63750 -11.40706 -11.18962 -10.97096 -10.72891 -10.57302 -9.80171 -9.04041 -8.53537 -6.25426 0.92796 1.30013 1.43344 1.47828 1.51719 2.02230 2.23872 2.65309 2.84581 3.15331 3.28613 3.61587 3.72642 3.84404 4.12198 4.17513 4.22565 4.33286 4.38051 4.39500 4.45786 4.54327 4.66196 4.80610 4.85184 5.00122 5.05502 5.14091 5.20684 5.26841 5.37884 5.48096 5.68846 6.08832 6.40604 6.91374 7.00424 7.03917 8.58966 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.044504 B = 0.003959 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.006213 B = 7070.266020 C = 7512.798595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.048 3.952 3 Si 0.913 3.087 4 H -0.261 1.261 5 H -0.256 1.256 6 H -0.239 1.239 7 C -0.530 4.530 8 H 0.062 0.938 9 S -0.174 6.174 10 C -0.101 4.101 11 C 0.550 3.450 12 O -0.568 6.568 13 N -0.625 5.625 14 C 0.097 3.903 15 C -0.097 4.097 16 H 0.096 0.904 17 C -0.110 4.110 18 C -0.145 4.145 19 C 0.111 3.889 20 H 0.076 0.924 21 O -0.577 6.577 22 C -0.099 4.099 23 H 0.096 0.904 24 C 0.109 3.891 25 H 0.278 0.722 26 H 0.110 0.890 27 H 0.108 0.892 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.393 0.607 35 H 0.054 0.946 36 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.848 -22.145 -1.439 27.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.157 4.157 3 Si 0.735 3.265 4 H -0.186 1.186 5 H -0.180 1.180 6 H -0.163 1.163 7 C -0.678 4.678 8 H 0.081 0.919 9 S 0.052 5.948 10 C -0.251 4.251 11 C 0.338 3.662 12 O -0.448 6.448 13 N -0.359 5.359 14 C -0.025 4.025 15 C -0.116 4.116 16 H 0.114 0.886 17 C -0.148 4.148 18 C -0.182 4.182 19 C 0.052 3.948 20 H 0.094 0.906 21 O -0.387 6.387 22 C -0.118 4.118 23 H 0.115 0.885 24 C -0.012 4.012 25 H 0.087 0.913 26 H 0.128 0.872 27 H 0.127 0.873 28 H 0.106 0.894 29 H 0.102 0.898 30 H 0.088 0.912 31 H 0.100 0.900 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.244 0.756 35 H 0.072 0.928 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 17.395 -20.051 -1.535 26.589 hybrid contribution -0.903 -0.533 0.073 1.051 sum 16.492 -20.584 -1.462 26.417 Atomic orbital electron populations 1.70008 1.07235 1.29100 1.48981 1.25534 0.95268 1.02166 0.92753 0.85882 0.80642 0.79639 0.80314 1.18557 1.18026 1.16303 1.22432 0.89981 0.96793 1.58546 0.91942 1.84717 1.06747 1.05744 1.97569 1.23183 0.95295 0.99734 1.06934 1.19652 0.89484 0.81575 0.75441 1.90672 1.59531 1.42929 1.51639 1.49147 1.09830 1.04488 1.72427 1.23104 0.96358 0.82345 1.00663 1.22736 0.94225 0.95429 0.99252 0.88567 1.22101 0.97624 0.93593 1.01501 1.22850 0.94682 0.96952 1.03740 1.22143 0.96871 0.92857 0.82931 0.90617 1.86464 1.73653 1.53181 1.25426 1.22759 0.95766 0.94481 0.98792 0.88527 1.22464 0.81316 0.95431 1.02025 0.91257 0.87171 0.87335 0.89437 0.89835 0.91166 0.89996 0.89470 0.89495 0.75600 0.92751 0.88221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.34 13.97 21.65 0.30 -56.04 16 2 C 0.05 2.89 5.50 84.86 0.47 3.36 16 3 Si 0.91 45.85 27.74 68.60 1.90 47.75 16 4 H -0.26 -12.74 7.11 99.48 0.71 -12.04 16 5 H -0.26 -11.96 7.11 99.48 0.71 -11.26 16 6 H -0.24 -12.09 6.74 99.48 0.67 -11.42 16 7 C -0.53 -31.65 10.04 67.96 0.68 -30.97 16 8 H 0.06 3.92 8.03 -2.91 -0.02 3.89 16 9 S -0.17 -9.25 18.55 -56.49 -1.05 -10.30 16 10 C -0.10 -4.16 5.14 71.24 0.37 -3.80 16 11 C 0.55 21.85 7.94 87.66 0.70 22.55 16 12 O -0.57 -27.26 16.15 -3.03 -0.05 -27.31 16 13 N -0.62 -18.70 3.31 -805.81 -2.67 -21.37 16 14 C 0.10 2.06 6.46 86.66 0.56 2.62 16 15 C -0.10 -1.52 3.95 -9.34 -0.04 -1.56 16 16 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 17 C -0.11 -1.17 6.37 31.11 0.20 -0.97 16 18 C -0.14 -1.10 6.55 31.24 0.20 -0.90 16 19 C 0.11 1.26 4.15 31.11 0.13 1.39 16 20 H 0.08 0.65 8.14 -2.39 -0.02 0.64 16 21 O -0.58 -7.53 10.77 -148.98 -1.60 -9.14 16 22 C -0.10 -1.70 3.93 -9.48 -0.04 -1.73 16 23 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 24 C 0.11 2.80 6.38 86.52 0.55 3.35 16 25 H 0.28 15.77 8.31 -92.71 -0.77 15.00 16 26 H 0.11 4.20 7.99 -2.39 -0.02 4.18 16 27 H 0.11 4.19 8.14 -2.39 -0.02 4.17 16 28 H 0.09 1.68 7.22 -2.39 -0.02 1.66 16 29 H 0.08 1.74 7.32 -2.39 -0.02 1.72 16 30 H 0.07 0.80 7.13 -2.39 -0.02 0.79 16 31 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.09 0.46 8.11 -2.39 -0.02 0.44 16 33 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.39 1.69 9.11 -74.06 -0.67 1.02 16 35 H 0.05 1.62 7.88 -2.39 -0.02 1.60 16 36 H 0.10 2.56 5.84 -2.38 -0.01 2.55 16 Total: -1.00 -76.99 303.63 1.00 -76.00 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: 0.38 Total: 7.08 kcal Atomic # 6 Polarization: -10.46 SS G_CDS: 3.78 Total: -6.67 kcal Atomic # 7 Polarization: -75.04 SS G_CDS: -2.36 Total: -77.41 kcal Atomic # 8 Polarization: -34.79 SS G_CDS: -1.65 Total: -36.45 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 1.90 Total: 47.75 kcal Atomic # 16 Polarization: -9.25 SS G_CDS: -1.05 Total: -10.30 kcal Total: -76.99 1.00 -76.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156507165.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.350 kcal (2) G-P(sol) polarization free energy of solvation -76.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds