Wall clock time and date at job start Mon Mar 30 2020 05:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86800 * 120.00230 * 2 1 4 4 H 1.48500 * 109.47035 * 239.99967 * 3 2 1 5 5 H 1.48505 * 109.46878 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47336 * 119.99615 * 3 2 1 7 7 C 1.38948 * 119.99781 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99912 * 180.02562 * 7 2 1 9 9 N 1.37102 * 120.00150 * 359.73092 * 7 2 1 10 10 C 1.34775 * 119.99879 * 180.26925 * 9 7 2 11 11 O 1.21295 * 120.00377 * 0.02562 * 10 9 7 12 12 C 1.50707 * 119.99923 * 179.97438 * 10 9 7 13 13 N 1.46905 * 109.46987 * 187.38971 * 12 10 9 14 14 C 1.46897 * 110.99947 * 56.25561 * 13 12 10 15 15 C 1.50249 * 109.98351 * 73.06825 * 14 13 12 16 16 O 1.21284 * 118.62781 * 197.19955 * 15 14 13 17 17 N 1.33722 * 122.75111 * 17.19420 * 15 14 13 18 18 C 1.46010 * 122.92397 * 358.32267 * 17 15 14 19 19 C 1.47190 * 110.99713 * 179.14598 * 13 12 10 20 20 H 1.08992 * 109.59444 * 185.70474 * 19 13 12 21 21 C 1.50702 * 109.59334 * 65.40001 * 19 13 12 22 22 O 1.20825 * 120.00054 * 0.02562 * 21 19 13 23 23 O 1.34225 * 119.99917 * 179.97438 * 21 19 13 24 24 H 0.96994 * 119.99928 * 0.02562 * 1 2 3 25 25 H 0.96995 * 120.00208 * 0.27699 * 9 7 2 26 26 H 1.08995 * 109.46969 * 307.39035 * 12 10 9 27 27 H 1.08999 * 109.46633 * 67.38870 * 12 10 9 28 28 H 1.09004 * 109.38100 * 193.22328 * 14 13 12 29 29 H 1.09003 * 109.38964 * 312.90562 * 14 13 12 30 30 H 0.97000 * 118.53739 * 178.33645 * 17 15 14 31 31 H 1.09005 * 109.37114 * 257.98179 * 18 17 15 32 32 H 1.08995 * 109.28609 * 138.27640 * 18 17 15 33 33 H 0.96700 * 117.00023 * 180.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0066 10 6 1.9972 -3.5578 0.0127 11 8 3.2101 -3.5579 0.0131 12 6 1.2436 -4.8630 0.0199 13 7 2.1884 -5.9728 0.2037 14 6 2.9776 -5.7948 1.4298 15 6 2.1206 -6.0602 2.6351 16 8 2.4995 -5.6626 3.7164 17 7 0.9575 -6.7164 2.5654 18 6 0.3955 -7.2041 1.3092 19 6 1.4843 -7.2650 0.2363 20 1 2.1906 -8.0603 0.4738 21 6 0.8556 -7.5319 -1.1071 22 8 0.9799 -6.7300 -2.0023 23 8 0.1584 -8.6609 -1.3093 24 1 -0.4850 0.8400 -0.0004 25 1 0.3533 -2.3907 0.0065 26 1 0.5219 -4.8612 0.8367 27 1 0.7195 -4.9851 -0.9279 28 1 3.8177 -6.4893 1.4233 29 1 3.3551 -4.7731 1.4721 30 1 0.4652 -6.8752 3.3860 31 1 -0.3972 -6.5311 0.9823 32 1 -0.0172 -8.2012 1.4626 33 1 -0.2260 -8.7881 -2.1875 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230927212.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:02 Heat of formation + Delta-G solvation = -130.092859 kcal Electronic energy + Delta-G solvation = -21567.098271 eV Core-core repulsion = 18014.923852 eV Total energy + Delta-G solvation = -3552.174419 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.105 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.32360 -39.84725 -38.28459 -36.98948 -36.19929 -34.35983 -33.65265 -31.31369 -30.58993 -28.64487 -25.48124 -24.97926 -23.77666 -21.69775 -20.04754 -18.98739 -18.29386 -17.88570 -17.36180 -16.79060 -16.40886 -16.12883 -15.71434 -15.36322 -14.86006 -14.50082 -14.17688 -14.02074 -13.69709 -13.67170 -13.13376 -12.91106 -12.33304 -12.22078 -11.81917 -11.53436 -11.37711 -11.31518 -10.97176 -10.61748 -10.43972 -10.24983 -10.22782 -9.47057 -9.27378 -8.51795 -8.17049 -7.97389 -6.43752 -3.84626 1.98684 2.54003 2.67270 3.02824 3.20511 3.26562 3.31238 3.73221 3.84165 4.16519 4.28090 4.54024 4.67114 4.86617 5.01135 5.07359 5.19531 5.27264 5.46854 5.68845 5.84648 6.08438 6.16046 6.33195 6.58542 6.82529 6.85971 7.16478 7.53923 7.72928 8.02249 8.16178 8.56394 9.14393 9.49033 9.99057 10.73705 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.022232 B = 0.005578 C = 0.004936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.120571 B = 5018.608881 C = 5671.405496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.024 3.976 3 Si 0.933 3.067 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.301 4.301 8 H 0.105 0.895 9 N -0.555 5.555 10 C 0.442 3.558 11 O -0.577 6.577 12 C 0.026 3.974 13 N -0.483 5.483 14 C 0.029 3.971 15 C 0.487 3.513 16 O -0.543 6.543 17 N -0.726 5.726 18 C 0.085 3.915 19 C 0.076 3.924 20 H 0.132 0.868 21 C 0.485 3.515 22 O -0.476 6.476 23 O -0.519 6.519 24 H 0.273 0.727 25 H 0.392 0.608 26 H 0.050 0.950 27 H 0.112 0.888 28 H 0.113 0.887 29 H 0.159 0.841 30 H 0.401 0.599 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.070 -17.400 0.122 17.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.178 4.178 3 Si 0.759 3.241 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.430 4.430 8 H 0.123 0.877 9 N -0.191 5.191 10 C 0.228 3.772 11 O -0.463 6.463 12 C -0.104 4.104 13 N -0.208 5.208 14 C -0.101 4.101 15 C 0.274 3.726 16 O -0.419 6.419 17 N -0.381 5.381 18 C -0.042 4.042 19 C -0.034 4.034 20 H 0.150 0.850 21 C 0.324 3.676 22 O -0.360 6.360 23 O -0.331 6.331 24 H 0.083 0.917 25 H 0.225 0.775 26 H 0.068 0.932 27 H 0.130 0.870 28 H 0.131 0.869 29 H 0.176 0.824 30 H 0.237 0.763 31 H 0.094 0.906 32 H 0.114 0.886 33 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -2.523 -16.652 0.200 16.844 hybrid contribution -1.437 0.558 0.264 1.564 sum -3.960 -16.095 0.464 16.581 Atomic orbital electron populations 1.69602 1.06008 1.28410 1.50073 1.25288 0.95648 0.99842 0.97017 0.85886 0.78770 0.80236 0.79163 1.19790 1.20958 1.19794 1.19687 0.93445 0.82050 1.47840 0.87714 1.41822 1.09221 1.04559 1.63450 1.19477 0.88309 0.84374 0.85056 1.90449 1.13508 1.86618 1.55725 1.22259 0.94210 0.90931 1.03011 1.61976 1.23676 0.98931 1.36182 1.23016 0.95392 1.09830 0.81851 1.21643 0.81833 0.76424 0.92745 1.90756 1.71003 1.50180 1.29968 1.45580 1.23486 1.58996 1.10022 1.21906 0.96217 1.01631 0.84458 1.21582 0.96310 0.96537 0.89020 0.85008 1.22759 0.75816 0.78765 0.90238 1.90790 1.55211 1.45829 1.44215 1.84477 1.64964 1.41999 1.41678 0.91729 0.77467 0.93184 0.87043 0.86947 0.82357 0.76266 0.90605 0.88588 0.72716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.64 13.05 55.50 0.72 -23.92 16 2 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 3 Si 0.93 21.25 29.55 -169.99 -5.02 16.23 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.30 -8.45 9.68 -14.93 -0.14 -8.59 16 8 H 0.11 3.06 7.16 -52.48 -0.38 2.68 16 9 N -0.56 -14.25 5.29 -10.96 -0.06 -14.31 16 10 C 0.44 10.52 7.22 -10.98 -0.08 10.44 16 11 O -0.58 -15.32 13.58 5.54 0.08 -15.25 16 12 C 0.03 0.48 4.50 -4.97 -0.02 0.46 16 13 N -0.48 -7.64 4.40 -230.96 -1.02 -8.66 16 14 C 0.03 0.47 5.43 -5.20 -0.03 0.44 16 15 C 0.49 7.77 7.21 -11.67 -0.08 7.68 16 16 O -0.54 -10.82 17.83 5.55 0.10 -10.72 16 17 N -0.73 -8.44 5.33 -61.06 -0.33 -8.76 16 18 C 0.08 0.77 5.69 -4.32 -0.02 0.75 16 19 C 0.08 0.84 2.76 -68.71 -0.19 0.65 16 20 H 0.13 1.15 8.08 -51.93 -0.42 0.73 16 21 C 0.49 5.34 7.34 36.01 0.26 5.60 16 22 O -0.48 -7.28 15.03 -18.75 -0.28 -7.56 16 23 O -0.52 -3.64 13.37 -39.24 -0.52 -4.16 16 24 H 0.27 7.07 8.31 -40.82 -0.34 6.74 16 25 H 0.39 9.68 7.90 -40.82 -0.32 9.35 16 26 H 0.05 0.83 5.83 -51.93 -0.30 0.53 16 27 H 0.11 2.00 5.86 -51.93 -0.30 1.70 16 28 H 0.11 1.54 8.14 -51.93 -0.42 1.12 16 29 H 0.16 3.29 5.10 -51.93 -0.26 3.03 16 30 H 0.40 4.05 8.84 -40.82 -0.36 3.69 16 31 H 0.08 0.71 6.82 -51.93 -0.35 0.36 16 32 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.41 1.33 9.10 45.56 0.41 1.75 16 LS Contribution 283.37 15.07 4.27 4.27 Total: -1.00 -35.75 283.37 -4.74 -40.49 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -2.27 Total: 14.37 kcal Atomic # 6 Polarization: 18.38 SS G_CDS: -0.40 Total: 17.98 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: -0.68 Total: -55.64 kcal Atomic # 8 Polarization: -37.06 SS G_CDS: -0.63 Total: -37.69 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -35.75 -4.74 -40.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230927212.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.603 kcal (2) G-P(sol) polarization free energy of solvation -35.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds