Wall clock time and date at job start Mon Mar 30 2020 05:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86800 * 120.00230 * 2 1 4 4 H 1.48500 * 109.47035 * 239.99967 * 3 2 1 5 5 H 1.48505 * 109.46878 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47336 * 119.99615 * 3 2 1 7 7 C 1.38948 * 119.99781 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99912 * 180.02562 * 7 2 1 9 9 N 1.37102 * 120.00150 * 359.73092 * 7 2 1 10 10 C 1.34775 * 119.99879 * 180.26925 * 9 7 2 11 11 O 1.21295 * 120.00377 * 0.02562 * 10 9 7 12 12 C 1.50707 * 119.99923 * 179.97438 * 10 9 7 13 13 N 1.46905 * 109.46987 * 187.38971 * 12 10 9 14 14 C 1.46897 * 110.99947 * 56.25561 * 13 12 10 15 15 C 1.50249 * 109.98351 * 73.06825 * 14 13 12 16 16 O 1.21284 * 118.62781 * 197.19955 * 15 14 13 17 17 N 1.33722 * 122.75111 * 17.19420 * 15 14 13 18 18 C 1.46010 * 122.92397 * 358.32267 * 17 15 14 19 19 C 1.47190 * 110.99713 * 179.14598 * 13 12 10 20 20 H 1.08992 * 109.59444 * 185.70474 * 19 13 12 21 21 C 1.50702 * 109.59334 * 65.40001 * 19 13 12 22 22 O 1.20825 * 120.00054 * 0.02562 * 21 19 13 23 23 O 1.34225 * 119.99917 * 179.97438 * 21 19 13 24 24 H 0.96994 * 119.99928 * 0.02562 * 1 2 3 25 25 H 0.96995 * 120.00208 * 0.27699 * 9 7 2 26 26 H 1.08995 * 109.46969 * 307.39035 * 12 10 9 27 27 H 1.08999 * 109.46633 * 67.38870 * 12 10 9 28 28 H 1.09004 * 109.38100 * 193.22328 * 14 13 12 29 29 H 1.09003 * 109.38964 * 312.90562 * 14 13 12 30 30 H 0.97000 * 118.53739 * 178.33645 * 17 15 14 31 31 H 1.09005 * 109.37114 * 257.98179 * 18 17 15 32 32 H 1.08995 * 109.28609 * 138.27640 * 18 17 15 33 33 H 0.96700 * 117.00023 * 180.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0066 10 6 1.9972 -3.5578 0.0127 11 8 3.2101 -3.5579 0.0131 12 6 1.2436 -4.8630 0.0199 13 7 2.1884 -5.9728 0.2037 14 6 2.9776 -5.7948 1.4298 15 6 2.1206 -6.0602 2.6351 16 8 2.4995 -5.6626 3.7164 17 7 0.9575 -6.7164 2.5654 18 6 0.3955 -7.2041 1.3092 19 6 1.4843 -7.2650 0.2363 20 1 2.1906 -8.0603 0.4738 21 6 0.8556 -7.5319 -1.1071 22 8 0.9799 -6.7300 -2.0023 23 8 0.1584 -8.6609 -1.3093 24 1 -0.4850 0.8400 -0.0004 25 1 0.3533 -2.3907 0.0065 26 1 0.5219 -4.8612 0.8367 27 1 0.7195 -4.9851 -0.9279 28 1 3.8177 -6.4893 1.4233 29 1 3.3551 -4.7731 1.4721 30 1 0.4652 -6.8752 3.3860 31 1 -0.3972 -6.5311 0.9823 32 1 -0.0172 -8.2012 1.4626 33 1 -0.2260 -8.7881 -2.1875 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230927212.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:02 Heat of formation + Delta-G solvation = -163.579823 kcal Electronic energy + Delta-G solvation = -21568.550375 eV Core-core repulsion = 18014.923852 eV Total energy + Delta-G solvation = -3553.626523 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.105 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.41950 -40.85012 -40.04803 -38.25948 -37.03583 -36.12062 -35.06439 -33.35514 -31.64861 -30.15452 -27.10507 -26.11961 -25.16623 -22.67214 -21.61948 -20.40007 -19.80182 -19.10020 -18.51196 -18.16229 -17.51127 -17.32099 -16.97975 -16.62372 -16.30982 -16.10393 -15.68929 -15.55378 -15.06024 -15.02509 -14.17541 -14.12641 -13.96793 -13.52988 -13.18216 -13.03280 -12.84535 -12.63214 -12.45796 -12.33670 -12.13277 -11.78096 -11.51024 -11.37094 -10.33983 -10.28274 -10.04008 -9.46837 -8.49736 -5.98722 1.14776 1.37036 1.40056 1.40630 1.51584 1.76241 1.95959 1.98848 2.27658 2.63099 3.15058 3.16756 3.42930 3.54497 3.77882 3.98813 4.17632 4.32593 4.36088 4.40664 4.52717 4.56491 4.79350 5.37060 5.39436 5.59893 5.67992 5.79125 5.97093 6.04235 6.53872 7.01478 7.03836 7.07769 7.48596 8.02966 8.67590 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.022232 B = 0.005578 C = 0.004936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.120571 B = 5018.608881 C = 5671.405496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.012 4.012 3 Si 0.995 3.005 4 H -0.270 1.270 5 H -0.269 1.269 6 H -0.272 1.272 7 C -0.336 4.336 8 H 0.082 0.918 9 N -0.568 5.568 10 C 0.438 3.562 11 O -0.609 6.609 12 C 0.045 3.955 13 N -0.499 5.499 14 C 0.034 3.966 15 C 0.489 3.511 16 O -0.593 6.593 17 N -0.707 5.707 18 C 0.085 3.915 19 C 0.072 3.928 20 H 0.163 0.837 21 C 0.500 3.500 22 O -0.527 6.527 23 O -0.497 6.497 24 H 0.279 0.721 25 H 0.395 0.605 26 H 0.067 0.933 27 H 0.118 0.882 28 H 0.137 0.863 29 H 0.111 0.889 30 H 0.413 0.587 31 H 0.079 0.921 32 H 0.145 0.855 33 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.410 -19.335 0.046 20.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.212 4.212 3 Si 0.818 3.182 4 H -0.195 1.195 5 H -0.193 1.193 6 H -0.198 1.198 7 C -0.465 4.465 8 H 0.100 0.900 9 N -0.205 5.205 10 C 0.225 3.775 11 O -0.496 6.496 12 C -0.085 4.085 13 N -0.224 5.224 14 C -0.096 4.096 15 C 0.275 3.725 16 O -0.473 6.473 17 N -0.361 5.361 18 C -0.040 4.040 19 C -0.038 4.038 20 H 0.180 0.820 21 C 0.340 3.660 22 O -0.415 6.415 23 O -0.311 6.311 24 H 0.088 0.912 25 H 0.228 0.772 26 H 0.085 0.915 27 H 0.135 0.865 28 H 0.155 0.845 29 H 0.129 0.871 30 H 0.251 0.749 31 H 0.098 0.902 32 H 0.163 0.837 33 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges -3.937 -18.666 0.102 19.077 hybrid contribution -1.056 0.974 0.240 1.456 sum -4.992 -17.692 0.342 18.386 Atomic orbital electron populations 1.69663 1.06891 1.29489 1.49975 1.26077 0.96579 1.02519 0.96025 0.84966 0.77780 0.76463 0.78999 1.19525 1.19328 1.19762 1.19672 0.92841 0.83841 1.50160 0.90008 1.41896 1.09257 1.04762 1.64562 1.20527 0.88344 0.85822 0.82806 1.90434 1.15291 1.87516 1.56324 1.22012 0.93934 0.88665 1.03912 1.61866 1.24243 1.00259 1.36014 1.22736 0.96590 1.07706 0.82596 1.21486 0.82890 0.76489 0.91609 1.90735 1.72575 1.52573 1.31391 1.45436 1.21853 1.57092 1.11704 1.22159 0.95159 1.04289 0.82426 1.21794 0.97500 0.94477 0.89991 0.81953 1.22608 0.75129 0.78835 0.89393 1.90795 1.57292 1.47725 1.45658 1.84419 1.63829 1.39608 1.43283 0.91189 0.77172 0.91518 0.86463 0.84542 0.87113 0.74912 0.90249 0.83694 0.70349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.57 13.05 21.66 0.28 -50.29 16 2 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 3 Si 0.99 43.89 29.55 68.60 2.03 45.92 16 4 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 6 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 7 C -0.34 -19.54 9.68 84.04 0.81 -18.73 16 8 H 0.08 5.03 7.16 -2.91 -0.02 5.01 16 9 N -0.57 -30.18 5.29 -306.97 -1.62 -31.80 16 10 C 0.44 21.49 7.22 87.66 0.63 22.12 16 11 O -0.61 -33.80 13.58 -3.07 -0.04 -33.84 16 12 C 0.05 1.62 4.50 85.56 0.39 2.01 16 13 N -0.50 -15.21 4.40 -884.62 -3.89 -19.11 16 14 C 0.03 1.10 5.43 85.42 0.46 1.56 16 15 C 0.49 15.16 7.21 87.68 0.63 15.79 16 16 O -0.59 -23.84 17.83 -3.04 -0.05 -23.89 16 17 N -0.71 -14.41 5.33 -466.09 -2.48 -16.90 16 18 C 0.08 1.18 5.69 86.47 0.49 1.67 16 19 C 0.07 1.33 2.76 44.11 0.12 1.45 16 20 H 0.16 2.08 8.08 -2.39 -0.02 2.06 16 21 C 0.50 9.36 7.34 71.24 0.52 9.89 16 22 O -0.53 -15.22 15.03 21.97 0.33 -14.89 16 23 O -0.50 -4.74 13.37 -51.37 -0.69 -5.42 16 24 H 0.28 14.33 8.31 -92.71 -0.77 13.56 16 25 H 0.39 20.02 7.90 -92.71 -0.73 19.29 16 26 H 0.07 2.14 5.83 -2.39 -0.01 2.12 16 27 H 0.12 4.15 5.86 -2.39 -0.01 4.13 16 28 H 0.14 3.65 8.14 -2.38 -0.02 3.63 16 29 H 0.11 4.83 5.10 -2.39 -0.01 4.82 16 30 H 0.41 7.07 8.84 -92.71 -0.82 6.25 16 31 H 0.08 1.16 6.82 -2.38 -0.02 1.14 16 32 H 0.15 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.43 0.99 9.10 -74.06 -0.67 0.32 16 Total: -1.00 -81.59 283.37 -2.62 -84.21 By element: Atomic # 1 Polarization: 31.45 SS G_CDS: -1.01 Total: 30.44 kcal Atomic # 6 Polarization: 31.05 SS G_CDS: 4.53 Total: 35.59 kcal Atomic # 7 Polarization: -110.38 SS G_CDS: -7.72 Total: -118.10 kcal Atomic # 8 Polarization: -77.59 SS G_CDS: -0.45 Total: -78.05 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -81.59 -2.62 -84.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230927212.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.371 kcal (2) G-P(sol) polarization free energy of solvation -81.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds