Wall clock time and date at job start Mon Mar 30 2020 04:45:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 N 1.46497 * 109.47520 * 2 1
4 4 C 1.39665 * 119.99909 * 84.99812 * 3 2 1
5 5 C 1.38978 * 120.05313 * 240.08973 * 4 3 2
6 6 C 1.38107 * 120.03820 * 180.02562 * 5 4 3
7 7 C 1.38213 * 120.12963 * 359.74181 * 6 5 4
8 8 C 1.38775 * 120.09118 * 0.51249 * 7 6 5
9 9 O 1.35905 * 120.01704 * 179.76383 * 8 7 6
10 10 C 1.38613 * 119.96328 * 359.49376 * 8 7 6
11 11 S 1.65603 * 120.00205 * 265.00666 * 3 2 1
12 12 O 1.42101 * 106.40269 * 29.14413 * 11 3 2
13 13 O 1.42098 * 106.40090 * 162.06029 * 11 3 2
14 14 C 1.76193 * 107.21875 * 275.60417 * 11 3 2
15 15 H 1.08008 * 119.99937 * 359.97438 * 14 11 3
16 16 C 1.37870 * 120.00390 * 180.02562 * 14 11 3
17 17 N 1.31515 * 119.99997 * 359.97438 * 16 14 11
18 18 Si 1.86799 * 120.00437 * 179.97438 * 16 14 11
19 19 H 1.48504 * 109.47199 * 89.99512 * 18 16 14
20 20 H 1.48503 * 109.47562 * 209.99616 * 18 16 14
21 21 H 1.48497 * 109.47210 * 329.99827 * 18 16 14
22 22 H 1.08999 * 109.47079 * 299.99770 * 1 2 3
23 23 H 1.08993 * 109.47362 * 59.99424 * 1 2 3
24 24 H 1.09000 * 109.47427 * 180.02562 * 1 2 3
25 25 H 1.09004 * 109.46957 * 240.00711 * 2 1 3
26 26 H 1.08993 * 109.47362 * 120.00575 * 2 1 3
27 27 H 1.08003 * 119.97782 * 359.97438 * 5 4 3
28 28 H 1.08004 * 119.93749 * 180.02562 * 6 5 4
29 29 H 1.08008 * 119.95933 * 180.27536 * 7 6 5
30 30 H 0.96698 * 113.99659 * 269.72554 * 9 8 7
31 31 H 1.08001 * 120.06151 * 180.23018 * 10 8 7
32 32 H 0.97000 * 120.00345 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.1518 2.0747 1.2049
5 6 1.4368 3.2476 1.4157
6 6 1.5693 3.9334 2.6071
7 6 2.4086 3.4529 3.5946
8 6 3.1291 2.2851 3.3878
9 8 3.9575 1.8165 4.3579
10 6 2.9991 1.5937 2.1934
11 16 2.4122 2.1202 -1.4287
12 8 1.5891 1.5305 -2.4257
13 8 2.4344 3.5164 -1.1654
14 6 4.0686 1.6601 -1.8147
15 1 4.6161 1.0067 -1.1515
16 6 4.6662 2.1350 -2.9628
17 7 3.9998 2.9310 -3.7702
18 14 6.4226 1.6478 -3.3718
19 1 6.4150 0.4062 -4.1864
20 1 7.0733 2.7397 -4.1397
21 1 7.1759 1.4101 -2.1143
22 1 -0.3633 0.5138 0.8900
23 1 -0.3634 0.5139 -0.8899
24 1 -0.3634 -1.0276 0.0005
25 1 1.8933 -0.5137 -0.8901
26 1 1.8933 -0.5139 0.8899
27 1 0.7778 3.6235 0.6470
28 1 1.0126 4.8446 2.7694
29 1 2.5067 3.9891 4.5270
30 1 4.8636 2.1485 4.2954
31 1 3.5562 0.6827 2.0323
32 1 4.4201 3.2649 -4.5781
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000233500936.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:45:12
Heat of formation + Delta-G solvation = -106.415676 kcal
Electronic energy + Delta-G solvation = -19273.535345 eV
Core-core repulsion = 16132.847766 eV
Total energy + Delta-G solvation = -3140.687579 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 271.071 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-39.56092 -37.18806 -35.57284 -34.96529 -34.05154 -33.13520 -30.86347 -29.65796
-27.97886 -26.18575 -23.16913 -22.21812 -21.39044 -19.15012 -18.37488 -16.91477
-16.32065 -16.26111 -15.62271 -15.42719 -15.07832 -14.53242 -14.03057 -13.58206
-13.49171 -13.23199 -12.76325 -12.11137 -12.04178 -12.01445 -11.77121 -11.41774
-11.27792 -11.24762 -10.86965 -10.64951 -10.51752 -10.35072 -10.30498 -10.15265
-9.31763 -9.29547 -8.87318 -8.43895 -7.89174 -6.75902 -5.39062 1.50999
1.58644 2.14200 3.02760 3.09430 3.15862 3.85315 3.99140 4.29843
4.58104 4.58343 5.19561 5.28866 5.41380 5.57194 5.59982 5.71123
5.75398 5.80322 5.83905 5.99818 6.14286 6.20768 6.36087 6.53205
6.61281 6.67015 6.73084 6.85861 7.03124 7.26161 7.61862 7.82657
7.90164 8.82309 10.17820
Molecular weight = 271.07amu
Principal moments of inertia in cm(-1)
A = 0.019209 B = 0.007712 C = 0.006716
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1457.274865 B = 3629.789470 C = 4168.073259
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.172 4.172
2 C 0.123 3.877
3 N -0.964 5.964
4 C 0.189 3.811
5 C -0.117 4.117
6 C -0.092 4.092
7 C -0.160 4.160
8 C 0.107 3.893
9 O -0.502 6.502
10 C -0.153 4.153
11 S 2.705 3.295
12 O -0.994 6.994
13 O -0.991 6.991
14 C -1.018 5.018
15 H 0.102 0.898
16 C 0.133 3.867
17 N -0.845 5.845
18 Si 0.921 3.079
19 H -0.266 1.266
20 H -0.274 1.274
21 H -0.262 1.262
22 H 0.053 0.947
23 H 0.067 0.933
24 H 0.062 0.938
25 H 0.087 0.913
26 H 0.069 0.931
27 H 0.130 0.870
28 H 0.128 0.872
29 H 0.124 0.876
30 H 0.388 0.612
31 H 0.130 0.870
32 H 0.292 0.708
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.417 -2.382 11.132 11.472
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.231 4.231
2 C -0.001 4.001
3 N -0.790 5.790
4 C 0.094 3.906
5 C -0.138 4.138
6 C -0.111 4.111
7 C -0.179 4.179
8 C 0.062 3.938
9 O -0.312 6.312
10 C -0.175 4.175
11 S 2.807 3.193
12 O -0.985 6.985
13 O -0.982 6.982
14 C -1.151 5.151
15 H 0.121 0.879
16 C -0.085 4.085
17 N -0.474 5.474
18 Si 0.745 3.255
19 H -0.191 1.191
20 H -0.198 1.198
21 H -0.186 1.186
22 H 0.073 0.927
23 H 0.086 0.914
24 H 0.081 0.919
25 H 0.106 0.894
26 H 0.088 0.912
27 H 0.148 0.852
28 H 0.146 0.854
29 H 0.142 0.858
30 H 0.243 0.757
31 H 0.148 0.852
32 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges -2.563 -2.070 10.610 11.110
hybrid contribution 1.983 -0.315 -0.323 2.034
sum -0.580 -2.385 10.288 10.576
Atomic orbital electron populations
1.22221 0.96282 1.01870 1.02698 1.21207 0.94326 0.81574 1.02985
1.56161 1.79169 1.23024 1.20679 1.17177 0.94178 0.92694 0.86587
1.21441 0.99096 0.95835 0.97451 1.20824 0.98308 0.99283 0.92696
1.21293 1.00280 0.96273 1.00054 1.18191 0.94817 0.93130 0.87680
1.84785 1.24153 1.72247 1.50034 1.21487 1.00382 1.02400 0.93238
1.00997 0.76270 0.72574 0.69458 1.93372 1.70892 1.78708 1.55503
1.93380 1.89259 1.31855 1.83677 1.30511 1.23373 1.44213 1.17043
0.87934 1.24749 1.00192 0.90498 0.93052 1.69887 1.38671 1.26773
1.12092 0.86150 0.81055 0.79063 0.79255 1.19071 1.19849 1.18612
0.92750 0.91406 0.91893 0.89428 0.91243 0.85218 0.85430 0.85785
0.75680 0.85192 0.89778
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.66 10.22 37.16 0.38 -2.28 16
2 C 0.12 2.13 5.97 -4.04 -0.02 2.11 16
3 N -0.96 -19.98 2.84 -58.65 -0.17 -20.14 16
4 C 0.19 3.63 5.25 -83.81 -0.44 3.19 16
5 C -0.12 -2.15 8.61 -39.36 -0.34 -2.49 16
6 C -0.09 -1.39 10.03 -39.64 -0.40 -1.79 16
7 C -0.16 -2.26 9.98 -39.39 -0.39 -2.65 16
8 C 0.11 1.61 6.70 -39.24 -0.26 1.35 16
9 O -0.50 -6.49 13.50 -19.44 -0.26 -6.75 16
10 C -0.15 -2.60 9.34 -39.24 -0.37 -2.97 16
11 S 2.70 71.46 4.83 -107.50 -0.52 70.94 16
12 O -0.99 -28.35 17.05 -57.17 -0.97 -29.32 16
13 O -0.99 -28.35 15.63 -57.17 -0.89 -29.24 16
14 C -1.02 -27.95 9.74 30.60 0.30 -27.65 16
15 H 0.10 2.59 7.81 -52.48 -0.41 2.18 16
16 C 0.13 3.69 5.46 -17.82 -0.10 3.60 16
17 N -0.84 -24.62 13.19 55.43 0.73 -23.89 16
18 Si 0.92 20.42 29.54 -169.99 -5.02 15.40 16
19 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16
20 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16
21 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16
22 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16
23 H 0.07 1.18 7.99 -51.93 -0.41 0.77 16
24 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16
25 H 0.09 1.54 7.76 -51.93 -0.40 1.14 16
26 H 0.07 1.00 7.56 -51.93 -0.39 0.61 16
27 H 0.13 2.46 7.52 -52.48 -0.39 2.07 16
28 H 0.13 1.54 8.06 -52.48 -0.42 1.12 16
29 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16
30 H 0.39 3.24 9.06 45.56 0.41 3.66 16
31 H 0.13 2.05 7.94 -52.49 -0.42 1.64 16
32 H 0.29 7.63 8.31 -40.82 -0.34 7.29 16
LS Contribution 295.58 15.07 4.45 4.45
Total: -1.00 -34.69 295.58 -7.14 -41.83
By element:
Atomic # 1 Polarization: 9.16 SS G_CDS: -2.84 Total: 6.31 kcal
Atomic # 6 Polarization: -27.95 SS G_CDS: -1.64 Total: -29.59 kcal
Atomic # 7 Polarization: -44.60 SS G_CDS: 0.56 Total: -44.04 kcal
Atomic # 8 Polarization: -63.18 SS G_CDS: -2.13 Total: -65.31 kcal
Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal
Atomic # 16 Polarization: 71.46 SS G_CDS: -0.52 Total: 70.94 kcal
Total LS contribution 4.45 Total: 4.45 kcal
Total: -34.69 -7.14 -41.83 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000233500936.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -64.581 kcal
(2) G-P(sol) polarization free energy of solvation -34.694 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.276 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.140 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.834 kcal
(6) G-S(sol) free energy of system = (1) + (5) -106.416 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds