Wall clock time and date at job start Mon Mar 30 2020 04:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47520 * 2 1 4 4 C 1.39665 * 119.99909 * 84.99812 * 3 2 1 5 5 C 1.38978 * 120.05313 * 240.08973 * 4 3 2 6 6 C 1.38107 * 120.03820 * 180.02562 * 5 4 3 7 7 C 1.38213 * 120.12963 * 359.74181 * 6 5 4 8 8 C 1.38775 * 120.09118 * 0.51249 * 7 6 5 9 9 O 1.35905 * 120.01704 * 179.76383 * 8 7 6 10 10 C 1.38613 * 119.96328 * 359.49376 * 8 7 6 11 11 S 1.65603 * 120.00205 * 265.00666 * 3 2 1 12 12 O 1.42101 * 106.40269 * 29.14413 * 11 3 2 13 13 O 1.42098 * 106.40090 * 162.06029 * 11 3 2 14 14 C 1.76193 * 107.21875 * 275.60417 * 11 3 2 15 15 H 1.08008 * 119.99937 * 359.97438 * 14 11 3 16 16 C 1.37870 * 120.00390 * 180.02562 * 14 11 3 17 17 N 1.31515 * 119.99997 * 359.97438 * 16 14 11 18 18 Si 1.86799 * 120.00437 * 179.97438 * 16 14 11 19 19 H 1.48504 * 109.47199 * 89.99512 * 18 16 14 20 20 H 1.48503 * 109.47562 * 209.99616 * 18 16 14 21 21 H 1.48497 * 109.47210 * 329.99827 * 18 16 14 22 22 H 1.08999 * 109.47079 * 299.99770 * 1 2 3 23 23 H 1.08993 * 109.47362 * 59.99424 * 1 2 3 24 24 H 1.09000 * 109.47427 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46957 * 240.00711 * 2 1 3 26 26 H 1.08993 * 109.47362 * 120.00575 * 2 1 3 27 27 H 1.08003 * 119.97782 * 359.97438 * 5 4 3 28 28 H 1.08004 * 119.93749 * 180.02562 * 6 5 4 29 29 H 1.08008 * 119.95933 * 180.27536 * 7 6 5 30 30 H 0.96698 * 113.99659 * 269.72554 * 9 8 7 31 31 H 1.08001 * 120.06151 * 180.23018 * 10 8 7 32 32 H 0.97000 * 120.00345 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1518 2.0747 1.2049 5 6 1.4368 3.2476 1.4157 6 6 1.5693 3.9334 2.6071 7 6 2.4086 3.4529 3.5946 8 6 3.1291 2.2851 3.3878 9 8 3.9575 1.8165 4.3579 10 6 2.9991 1.5937 2.1934 11 16 2.4122 2.1202 -1.4287 12 8 1.5891 1.5305 -2.4257 13 8 2.4344 3.5164 -1.1654 14 6 4.0686 1.6601 -1.8147 15 1 4.6161 1.0067 -1.1515 16 6 4.6662 2.1350 -2.9628 17 7 3.9998 2.9310 -3.7702 18 14 6.4226 1.6478 -3.3718 19 1 6.4150 0.4062 -4.1864 20 1 7.0733 2.7397 -4.1397 21 1 7.1759 1.4101 -2.1143 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5137 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 0.7778 3.6235 0.6470 28 1 1.0126 4.8446 2.7694 29 1 2.5067 3.9891 4.5270 30 1 4.8636 2.1485 4.2954 31 1 3.5562 0.6827 2.0323 32 1 4.4201 3.2649 -4.5781 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233500936.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:12 Heat of formation + Delta-G solvation = -106.415676 kcal Electronic energy + Delta-G solvation = -19273.535345 eV Core-core repulsion = 16132.847766 eV Total energy + Delta-G solvation = -3140.687579 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.071 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.56092 -37.18806 -35.57284 -34.96529 -34.05154 -33.13520 -30.86347 -29.65796 -27.97886 -26.18575 -23.16913 -22.21812 -21.39044 -19.15012 -18.37488 -16.91477 -16.32065 -16.26111 -15.62271 -15.42719 -15.07832 -14.53242 -14.03057 -13.58206 -13.49171 -13.23199 -12.76325 -12.11137 -12.04178 -12.01445 -11.77121 -11.41774 -11.27792 -11.24762 -10.86965 -10.64951 -10.51752 -10.35072 -10.30498 -10.15265 -9.31763 -9.29547 -8.87318 -8.43895 -7.89174 -6.75902 -5.39062 1.50999 1.58644 2.14200 3.02760 3.09430 3.15862 3.85315 3.99140 4.29843 4.58104 4.58343 5.19561 5.28866 5.41380 5.57194 5.59982 5.71123 5.75398 5.80322 5.83905 5.99818 6.14286 6.20768 6.36087 6.53205 6.61281 6.67015 6.73084 6.85861 7.03124 7.26161 7.61862 7.82657 7.90164 8.82309 10.17820 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.019209 B = 0.007712 C = 0.006716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.274865 B = 3629.789470 C = 4168.073259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.123 3.877 3 N -0.964 5.964 4 C 0.189 3.811 5 C -0.117 4.117 6 C -0.092 4.092 7 C -0.160 4.160 8 C 0.107 3.893 9 O -0.502 6.502 10 C -0.153 4.153 11 S 2.705 3.295 12 O -0.994 6.994 13 O -0.991 6.991 14 C -1.018 5.018 15 H 0.102 0.898 16 C 0.133 3.867 17 N -0.845 5.845 18 Si 0.921 3.079 19 H -0.266 1.266 20 H -0.274 1.274 21 H -0.262 1.262 22 H 0.053 0.947 23 H 0.067 0.933 24 H 0.062 0.938 25 H 0.087 0.913 26 H 0.069 0.931 27 H 0.130 0.870 28 H 0.128 0.872 29 H 0.124 0.876 30 H 0.388 0.612 31 H 0.130 0.870 32 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.417 -2.382 11.132 11.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.001 4.001 3 N -0.790 5.790 4 C 0.094 3.906 5 C -0.138 4.138 6 C -0.111 4.111 7 C -0.179 4.179 8 C 0.062 3.938 9 O -0.312 6.312 10 C -0.175 4.175 11 S 2.807 3.193 12 O -0.985 6.985 13 O -0.982 6.982 14 C -1.151 5.151 15 H 0.121 0.879 16 C -0.085 4.085 17 N -0.474 5.474 18 Si 0.745 3.255 19 H -0.191 1.191 20 H -0.198 1.198 21 H -0.186 1.186 22 H 0.073 0.927 23 H 0.086 0.914 24 H 0.081 0.919 25 H 0.106 0.894 26 H 0.088 0.912 27 H 0.148 0.852 28 H 0.146 0.854 29 H 0.142 0.858 30 H 0.243 0.757 31 H 0.148 0.852 32 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.563 -2.070 10.610 11.110 hybrid contribution 1.983 -0.315 -0.323 2.034 sum -0.580 -2.385 10.288 10.576 Atomic orbital electron populations 1.22221 0.96282 1.01870 1.02698 1.21207 0.94326 0.81574 1.02985 1.56161 1.79169 1.23024 1.20679 1.17177 0.94178 0.92694 0.86587 1.21441 0.99096 0.95835 0.97451 1.20824 0.98308 0.99283 0.92696 1.21293 1.00280 0.96273 1.00054 1.18191 0.94817 0.93130 0.87680 1.84785 1.24153 1.72247 1.50034 1.21487 1.00382 1.02400 0.93238 1.00997 0.76270 0.72574 0.69458 1.93372 1.70892 1.78708 1.55503 1.93380 1.89259 1.31855 1.83677 1.30511 1.23373 1.44213 1.17043 0.87934 1.24749 1.00192 0.90498 0.93052 1.69887 1.38671 1.26773 1.12092 0.86150 0.81055 0.79063 0.79255 1.19071 1.19849 1.18612 0.92750 0.91406 0.91893 0.89428 0.91243 0.85218 0.85430 0.85785 0.75680 0.85192 0.89778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.66 10.22 37.16 0.38 -2.28 16 2 C 0.12 2.13 5.97 -4.04 -0.02 2.11 16 3 N -0.96 -19.98 2.84 -58.65 -0.17 -20.14 16 4 C 0.19 3.63 5.25 -83.81 -0.44 3.19 16 5 C -0.12 -2.15 8.61 -39.36 -0.34 -2.49 16 6 C -0.09 -1.39 10.03 -39.64 -0.40 -1.79 16 7 C -0.16 -2.26 9.98 -39.39 -0.39 -2.65 16 8 C 0.11 1.61 6.70 -39.24 -0.26 1.35 16 9 O -0.50 -6.49 13.50 -19.44 -0.26 -6.75 16 10 C -0.15 -2.60 9.34 -39.24 -0.37 -2.97 16 11 S 2.70 71.46 4.83 -107.50 -0.52 70.94 16 12 O -0.99 -28.35 17.05 -57.17 -0.97 -29.32 16 13 O -0.99 -28.35 15.63 -57.17 -0.89 -29.24 16 14 C -1.02 -27.95 9.74 30.60 0.30 -27.65 16 15 H 0.10 2.59 7.81 -52.48 -0.41 2.18 16 16 C 0.13 3.69 5.46 -17.82 -0.10 3.60 16 17 N -0.84 -24.62 13.19 55.43 0.73 -23.89 16 18 Si 0.92 20.42 29.54 -169.99 -5.02 15.40 16 19 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 20 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 21 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 22 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.07 1.18 7.99 -51.93 -0.41 0.77 16 24 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.09 1.54 7.76 -51.93 -0.40 1.14 16 26 H 0.07 1.00 7.56 -51.93 -0.39 0.61 16 27 H 0.13 2.46 7.52 -52.48 -0.39 2.07 16 28 H 0.13 1.54 8.06 -52.48 -0.42 1.12 16 29 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 30 H 0.39 3.24 9.06 45.56 0.41 3.66 16 31 H 0.13 2.05 7.94 -52.49 -0.42 1.64 16 32 H 0.29 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 295.58 15.07 4.45 4.45 Total: -1.00 -34.69 295.58 -7.14 -41.83 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -2.84 Total: 6.31 kcal Atomic # 6 Polarization: -27.95 SS G_CDS: -1.64 Total: -29.59 kcal Atomic # 7 Polarization: -44.60 SS G_CDS: 0.56 Total: -44.04 kcal Atomic # 8 Polarization: -63.18 SS G_CDS: -2.13 Total: -65.31 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 16 Polarization: 71.46 SS G_CDS: -0.52 Total: 70.94 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -34.69 -7.14 -41.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233500936.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.581 kcal (2) G-P(sol) polarization free energy of solvation -34.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds