Wall clock time and date at job start Mon Mar 30 2020 04:45:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 N 1.46497 * 109.47520 * 2 1
4 4 C 1.39665 * 119.99909 * 84.99812 * 3 2 1
5 5 C 1.38978 * 120.05313 * 240.08973 * 4 3 2
6 6 C 1.38107 * 120.03820 * 180.02562 * 5 4 3
7 7 C 1.38213 * 120.12963 * 359.74181 * 6 5 4
8 8 C 1.38775 * 120.09118 * 0.51249 * 7 6 5
9 9 O 1.35905 * 120.01704 * 179.76383 * 8 7 6
10 10 C 1.38613 * 119.96328 * 359.49376 * 8 7 6
11 11 S 1.65603 * 120.00205 * 265.00666 * 3 2 1
12 12 O 1.42101 * 106.40269 * 29.14413 * 11 3 2
13 13 O 1.42098 * 106.40090 * 162.06029 * 11 3 2
14 14 C 1.76193 * 107.21875 * 275.60417 * 11 3 2
15 15 H 1.08008 * 119.99937 * 359.97438 * 14 11 3
16 16 C 1.37870 * 120.00390 * 180.02562 * 14 11 3
17 17 N 1.31515 * 119.99997 * 359.97438 * 16 14 11
18 18 Si 1.86799 * 120.00437 * 179.97438 * 16 14 11
19 19 H 1.48504 * 109.47199 * 89.99512 * 18 16 14
20 20 H 1.48503 * 109.47562 * 209.99616 * 18 16 14
21 21 H 1.48497 * 109.47210 * 329.99827 * 18 16 14
22 22 H 1.08999 * 109.47079 * 299.99770 * 1 2 3
23 23 H 1.08993 * 109.47362 * 59.99424 * 1 2 3
24 24 H 1.09000 * 109.47427 * 180.02562 * 1 2 3
25 25 H 1.09004 * 109.46957 * 240.00711 * 2 1 3
26 26 H 1.08993 * 109.47362 * 120.00575 * 2 1 3
27 27 H 1.08003 * 119.97782 * 359.97438 * 5 4 3
28 28 H 1.08004 * 119.93749 * 180.02562 * 6 5 4
29 29 H 1.08008 * 119.95933 * 180.27536 * 7 6 5
30 30 H 0.96698 * 113.99659 * 269.72554 * 9 8 7
31 31 H 1.08001 * 120.06151 * 180.23018 * 10 8 7
32 32 H 0.97000 * 120.00345 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.1518 2.0747 1.2049
5 6 1.4368 3.2476 1.4157
6 6 1.5693 3.9334 2.6071
7 6 2.4086 3.4529 3.5946
8 6 3.1291 2.2851 3.3878
9 8 3.9575 1.8165 4.3579
10 6 2.9991 1.5937 2.1934
11 16 2.4122 2.1202 -1.4287
12 8 1.5891 1.5305 -2.4257
13 8 2.4344 3.5164 -1.1654
14 6 4.0686 1.6601 -1.8147
15 1 4.6161 1.0067 -1.1515
16 6 4.6662 2.1350 -2.9628
17 7 3.9998 2.9310 -3.7702
18 14 6.4226 1.6478 -3.3718
19 1 6.4150 0.4062 -4.1864
20 1 7.0733 2.7397 -4.1397
21 1 7.1759 1.4101 -2.1143
22 1 -0.3633 0.5138 0.8900
23 1 -0.3634 0.5139 -0.8899
24 1 -0.3634 -1.0276 0.0005
25 1 1.8933 -0.5137 -0.8901
26 1 1.8933 -0.5139 0.8899
27 1 0.7778 3.6235 0.6470
28 1 1.0126 4.8446 2.7694
29 1 2.5067 3.9891 4.5270
30 1 4.8636 2.1485 4.2954
31 1 3.5562 0.6827 2.0323
32 1 4.4201 3.2649 -4.5781
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000233500936.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:45:12
Heat of formation + Delta-G solvation = -133.791157 kcal
Electronic energy + Delta-G solvation = -19274.722435 eV
Core-core repulsion = 16132.847766 eV
Total energy + Delta-G solvation = -3141.874669 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 271.071 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-40.80390 -38.42495 -37.57719 -36.38526 -36.19610 -35.21620 -32.16438 -30.90673
-29.34417 -28.29313 -24.48092 -23.49306 -22.79153 -20.92612 -19.94945 -18.66509
-18.10316 -17.55099 -17.11597 -16.96765 -16.69912 -15.85336 -15.82162 -15.38568
-14.80876 -14.59720 -14.17583 -13.98074 -13.52775 -13.34488 -13.22516 -13.04887
-13.03424 -12.72846 -12.53968 -12.40278 -12.33893 -12.32499 -11.84252 -11.49006
-11.28894 -11.04545 -10.62738 -9.69648 -9.29337 -8.78344 -7.54764 0.01482
0.33903 0.46231 1.30718 1.31493 1.47805 2.16374 2.52826 2.58104
2.74169 3.36721 3.69218 3.91233 4.02219 4.22340 4.23351 4.31171
4.34558 4.41457 4.52385 4.61800 4.81937 4.94172 4.98419 5.14341
5.25521 5.30722 5.41113 5.47176 5.52633 5.74898 5.83449 6.16753
6.72156 6.89018 8.16059
Molecular weight = 271.07amu
Principal moments of inertia in cm(-1)
A = 0.019209 B = 0.007712 C = 0.006716
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1457.274865 B = 3629.789470 C = 4168.073259
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.168 4.168
2 C 0.112 3.888
3 N -0.959 5.959
4 C 0.158 3.842
5 C -0.148 4.148
6 C -0.087 4.087
7 C -0.149 4.149
8 C 0.116 3.884
9 O -0.502 6.502
10 C -0.163 4.163
11 S 2.709 3.291
12 O -1.030 7.030
13 O -1.025 7.025
14 C -1.040 5.040
15 H 0.118 0.882
16 C 0.071 3.929
17 N -0.893 5.893
18 Si 0.990 3.010
19 H -0.252 1.252
20 H -0.261 1.261
21 H -0.248 1.248
22 H 0.062 0.938
23 H 0.038 0.962
24 H 0.096 0.904
25 H 0.077 0.923
26 H 0.103 0.897
27 H 0.108 0.892
28 H 0.157 0.843
29 H 0.160 0.840
30 H 0.411 0.589
31 H 0.138 0.862
32 H 0.300 0.700
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.193 -3.074 13.522 13.868
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.227 4.227
2 C -0.011 4.011
3 N -0.788 5.788
4 C 0.064 3.936
5 C -0.169 4.169
6 C -0.106 4.106
7 C -0.168 4.168
8 C 0.071 3.929
9 O -0.315 6.315
10 C -0.184 4.184
11 S 2.813 3.187
12 O -1.021 7.021
13 O -1.016 7.016
14 C -1.173 5.173
15 H 0.136 0.864
16 C -0.142 4.142
17 N -0.524 5.524
18 Si 0.807 3.193
19 H -0.176 1.176
20 H -0.185 1.185
21 H -0.171 1.171
22 H 0.081 0.919
23 H 0.057 0.943
24 H 0.115 0.885
25 H 0.096 0.904
26 H 0.121 0.879
27 H 0.126 0.874
28 H 0.175 0.825
29 H 0.178 0.822
30 H 0.270 0.730
31 H 0.156 0.844
32 H 0.110 0.890
Dipole moment (debyes) X Y Z Total
from point charges -0.957 -2.756 13.006 13.330
hybrid contribution 1.443 -0.098 -0.890 1.698
sum 0.486 -2.855 12.116 12.458
Atomic orbital electron populations
1.22197 0.95099 1.03734 1.01640 1.21536 0.95481 0.80041 1.04066
1.55549 1.79342 1.24126 1.19822 1.17421 0.96159 0.93571 0.86465
1.21517 1.00059 0.96624 0.98684 1.21158 0.98178 0.99775 0.91447
1.21670 0.98568 0.95724 1.00836 1.18249 0.94796 0.92771 0.87106
1.84735 1.25533 1.72424 1.48831 1.21590 1.00125 1.03102 0.93606
1.00472 0.76045 0.72034 0.70120 1.93313 1.71601 1.79110 1.58029
1.93316 1.89538 1.34143 1.84570 1.30892 1.24149 1.44533 1.17768
0.86429 1.26033 1.05452 0.90050 0.92685 1.69981 1.41098 1.28264
1.13056 0.85140 0.74756 0.79508 0.79875 1.17562 1.18468 1.17062
0.91932 0.94291 0.88521 0.90432 0.87905 0.87389 0.82505 0.82220
0.73009 0.84419 0.88970
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -5.20 10.22 71.98 0.74 -4.46 16
2 C 0.11 3.86 5.97 86.38 0.52 4.38 16
3 N -0.96 -40.59 2.84 -339.48 -0.96 -41.55 16
4 C 0.16 6.08 5.25 38.20 0.20 6.28 16
5 C -0.15 -5.48 8.61 22.42 0.19 -5.29 16
6 C -0.09 -2.46 10.03 22.23 0.22 -2.24 16
7 C -0.15 -3.69 9.98 22.39 0.22 -3.47 16
8 C 0.12 3.15 6.70 22.49 0.15 3.30 16
9 O -0.50 -10.98 13.50 -92.48 -1.25 -12.23 16
10 C -0.16 -5.25 9.34 22.49 0.21 -5.04 16
11 S 2.71 148.98 4.83 -56.49 -0.27 148.71 16
12 O -1.03 -61.80 17.05 -128.00 -2.18 -63.98 16
13 O -1.03 -61.47 15.63 -128.00 -2.00 -63.47 16
14 C -1.04 -58.02 9.74 67.73 0.66 -57.36 16
15 H 0.12 5.94 7.81 -2.91 -0.02 5.92 16
16 C 0.07 3.96 5.46 84.65 0.46 4.42 16
17 N -0.89 -53.44 13.19 21.44 0.28 -53.16 16
18 Si 0.99 41.13 29.54 68.60 2.03 43.15 16
19 H -0.25 -9.80 7.11 99.48 0.71 -9.10 16
20 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16
21 H -0.25 -9.59 7.11 99.48 0.71 -8.89 16
22 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16
23 H 0.04 1.41 7.99 -2.39 -0.02 1.39 16
24 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16
25 H 0.08 2.79 7.76 -2.39 -0.02 2.77 16
26 H 0.10 2.82 7.56 -2.39 -0.02 2.80 16
27 H 0.11 4.36 7.52 -2.91 -0.02 4.34 16
28 H 0.16 3.39 8.06 -2.91 -0.02 3.37 16
29 H 0.16 2.84 8.06 -2.91 -0.02 2.81 16
30 H 0.41 5.16 9.06 -74.06 -0.67 4.49 16
31 H 0.14 4.10 7.94 -2.91 -0.02 4.08 16
32 H 0.30 16.07 8.31 -92.71 -0.77 15.30 16
Total: -1.00 -77.82 295.58 -0.32 -78.14
By element:
Atomic # 1 Polarization: 23.41 SS G_CDS: 0.47 Total: 23.88 kcal
Atomic # 6 Polarization: -63.06 SS G_CDS: 3.57 Total: -59.48 kcal
Atomic # 7 Polarization: -94.03 SS G_CDS: -0.68 Total: -94.72 kcal
Atomic # 8 Polarization: -134.25 SS G_CDS: -5.43 Total: -139.68 kcal
Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.15 kcal
Atomic # 16 Polarization: 148.98 SS G_CDS: -0.27 Total: 148.71 kcal
Total: -77.82 -0.32 -78.14 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000233500936.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -55.651 kcal
(2) G-P(sol) polarization free energy of solvation -77.825 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.476 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.315 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.140 kcal
(6) G-S(sol) free energy of system = (1) + (5) -133.791 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds