Wall clock time and date at job start Mon Mar 30 2020 04:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47520 * 2 1 4 4 C 1.39665 * 119.99909 * 84.99812 * 3 2 1 5 5 C 1.38978 * 120.05313 * 240.08973 * 4 3 2 6 6 C 1.38107 * 120.03820 * 180.02562 * 5 4 3 7 7 C 1.38213 * 120.12963 * 359.74181 * 6 5 4 8 8 C 1.38775 * 120.09118 * 0.51249 * 7 6 5 9 9 O 1.35905 * 120.01704 * 179.76383 * 8 7 6 10 10 C 1.38613 * 119.96328 * 359.49376 * 8 7 6 11 11 S 1.65603 * 120.00205 * 265.00666 * 3 2 1 12 12 O 1.42101 * 106.40269 * 29.14413 * 11 3 2 13 13 O 1.42098 * 106.40090 * 162.06029 * 11 3 2 14 14 C 1.76193 * 107.21875 * 275.60417 * 11 3 2 15 15 H 1.08008 * 119.99937 * 359.97438 * 14 11 3 16 16 C 1.37870 * 120.00390 * 180.02562 * 14 11 3 17 17 N 1.31515 * 119.99997 * 359.97438 * 16 14 11 18 18 Si 1.86799 * 120.00437 * 179.97438 * 16 14 11 19 19 H 1.48504 * 109.47199 * 89.99512 * 18 16 14 20 20 H 1.48503 * 109.47562 * 209.99616 * 18 16 14 21 21 H 1.48497 * 109.47210 * 329.99827 * 18 16 14 22 22 H 1.08999 * 109.47079 * 299.99770 * 1 2 3 23 23 H 1.08993 * 109.47362 * 59.99424 * 1 2 3 24 24 H 1.09000 * 109.47427 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46957 * 240.00711 * 2 1 3 26 26 H 1.08993 * 109.47362 * 120.00575 * 2 1 3 27 27 H 1.08003 * 119.97782 * 359.97438 * 5 4 3 28 28 H 1.08004 * 119.93749 * 180.02562 * 6 5 4 29 29 H 1.08008 * 119.95933 * 180.27536 * 7 6 5 30 30 H 0.96698 * 113.99659 * 269.72554 * 9 8 7 31 31 H 1.08001 * 120.06151 * 180.23018 * 10 8 7 32 32 H 0.97000 * 120.00345 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1518 2.0747 1.2049 5 6 1.4368 3.2476 1.4157 6 6 1.5693 3.9334 2.6071 7 6 2.4086 3.4529 3.5946 8 6 3.1291 2.2851 3.3878 9 8 3.9575 1.8165 4.3579 10 6 2.9991 1.5937 2.1934 11 16 2.4122 2.1202 -1.4287 12 8 1.5891 1.5305 -2.4257 13 8 2.4344 3.5164 -1.1654 14 6 4.0686 1.6601 -1.8147 15 1 4.6161 1.0067 -1.1515 16 6 4.6662 2.1350 -2.9628 17 7 3.9998 2.9310 -3.7702 18 14 6.4226 1.6478 -3.3718 19 1 6.4150 0.4062 -4.1864 20 1 7.0733 2.7397 -4.1397 21 1 7.1759 1.4101 -2.1143 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5137 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 0.7778 3.6235 0.6470 28 1 1.0126 4.8446 2.7694 29 1 2.5067 3.9891 4.5270 30 1 4.8636 2.1485 4.2954 31 1 3.5562 0.6827 2.0323 32 1 4.4201 3.2649 -4.5781 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233500936.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:12 Heat of formation + Delta-G solvation = -133.791157 kcal Electronic energy + Delta-G solvation = -19274.722435 eV Core-core repulsion = 16132.847766 eV Total energy + Delta-G solvation = -3141.874669 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.071 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.80390 -38.42495 -37.57719 -36.38526 -36.19610 -35.21620 -32.16438 -30.90673 -29.34417 -28.29313 -24.48092 -23.49306 -22.79153 -20.92612 -19.94945 -18.66509 -18.10316 -17.55099 -17.11597 -16.96765 -16.69912 -15.85336 -15.82162 -15.38568 -14.80876 -14.59720 -14.17583 -13.98074 -13.52775 -13.34488 -13.22516 -13.04887 -13.03424 -12.72846 -12.53968 -12.40278 -12.33893 -12.32499 -11.84252 -11.49006 -11.28894 -11.04545 -10.62738 -9.69648 -9.29337 -8.78344 -7.54764 0.01482 0.33903 0.46231 1.30718 1.31493 1.47805 2.16374 2.52826 2.58104 2.74169 3.36721 3.69218 3.91233 4.02219 4.22340 4.23351 4.31171 4.34558 4.41457 4.52385 4.61800 4.81937 4.94172 4.98419 5.14341 5.25521 5.30722 5.41113 5.47176 5.52633 5.74898 5.83449 6.16753 6.72156 6.89018 8.16059 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.019209 B = 0.007712 C = 0.006716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.274865 B = 3629.789470 C = 4168.073259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.112 3.888 3 N -0.959 5.959 4 C 0.158 3.842 5 C -0.148 4.148 6 C -0.087 4.087 7 C -0.149 4.149 8 C 0.116 3.884 9 O -0.502 6.502 10 C -0.163 4.163 11 S 2.709 3.291 12 O -1.030 7.030 13 O -1.025 7.025 14 C -1.040 5.040 15 H 0.118 0.882 16 C 0.071 3.929 17 N -0.893 5.893 18 Si 0.990 3.010 19 H -0.252 1.252 20 H -0.261 1.261 21 H -0.248 1.248 22 H 0.062 0.938 23 H 0.038 0.962 24 H 0.096 0.904 25 H 0.077 0.923 26 H 0.103 0.897 27 H 0.108 0.892 28 H 0.157 0.843 29 H 0.160 0.840 30 H 0.411 0.589 31 H 0.138 0.862 32 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.193 -3.074 13.522 13.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.011 4.011 3 N -0.788 5.788 4 C 0.064 3.936 5 C -0.169 4.169 6 C -0.106 4.106 7 C -0.168 4.168 8 C 0.071 3.929 9 O -0.315 6.315 10 C -0.184 4.184 11 S 2.813 3.187 12 O -1.021 7.021 13 O -1.016 7.016 14 C -1.173 5.173 15 H 0.136 0.864 16 C -0.142 4.142 17 N -0.524 5.524 18 Si 0.807 3.193 19 H -0.176 1.176 20 H -0.185 1.185 21 H -0.171 1.171 22 H 0.081 0.919 23 H 0.057 0.943 24 H 0.115 0.885 25 H 0.096 0.904 26 H 0.121 0.879 27 H 0.126 0.874 28 H 0.175 0.825 29 H 0.178 0.822 30 H 0.270 0.730 31 H 0.156 0.844 32 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.957 -2.756 13.006 13.330 hybrid contribution 1.443 -0.098 -0.890 1.698 sum 0.486 -2.855 12.116 12.458 Atomic orbital electron populations 1.22197 0.95099 1.03734 1.01640 1.21536 0.95481 0.80041 1.04066 1.55549 1.79342 1.24126 1.19822 1.17421 0.96159 0.93571 0.86465 1.21517 1.00059 0.96624 0.98684 1.21158 0.98178 0.99775 0.91447 1.21670 0.98568 0.95724 1.00836 1.18249 0.94796 0.92771 0.87106 1.84735 1.25533 1.72424 1.48831 1.21590 1.00125 1.03102 0.93606 1.00472 0.76045 0.72034 0.70120 1.93313 1.71601 1.79110 1.58029 1.93316 1.89538 1.34143 1.84570 1.30892 1.24149 1.44533 1.17768 0.86429 1.26033 1.05452 0.90050 0.92685 1.69981 1.41098 1.28264 1.13056 0.85140 0.74756 0.79508 0.79875 1.17562 1.18468 1.17062 0.91932 0.94291 0.88521 0.90432 0.87905 0.87389 0.82505 0.82220 0.73009 0.84419 0.88970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.20 10.22 71.98 0.74 -4.46 16 2 C 0.11 3.86 5.97 86.38 0.52 4.38 16 3 N -0.96 -40.59 2.84 -339.48 -0.96 -41.55 16 4 C 0.16 6.08 5.25 38.20 0.20 6.28 16 5 C -0.15 -5.48 8.61 22.42 0.19 -5.29 16 6 C -0.09 -2.46 10.03 22.23 0.22 -2.24 16 7 C -0.15 -3.69 9.98 22.39 0.22 -3.47 16 8 C 0.12 3.15 6.70 22.49 0.15 3.30 16 9 O -0.50 -10.98 13.50 -92.48 -1.25 -12.23 16 10 C -0.16 -5.25 9.34 22.49 0.21 -5.04 16 11 S 2.71 148.98 4.83 -56.49 -0.27 148.71 16 12 O -1.03 -61.80 17.05 -128.00 -2.18 -63.98 16 13 O -1.03 -61.47 15.63 -128.00 -2.00 -63.47 16 14 C -1.04 -58.02 9.74 67.73 0.66 -57.36 16 15 H 0.12 5.94 7.81 -2.91 -0.02 5.92 16 16 C 0.07 3.96 5.46 84.65 0.46 4.42 16 17 N -0.89 -53.44 13.19 21.44 0.28 -53.16 16 18 Si 0.99 41.13 29.54 68.60 2.03 43.15 16 19 H -0.25 -9.80 7.11 99.48 0.71 -9.10 16 20 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 21 H -0.25 -9.59 7.11 99.48 0.71 -8.89 16 22 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 23 H 0.04 1.41 7.99 -2.39 -0.02 1.39 16 24 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 25 H 0.08 2.79 7.76 -2.39 -0.02 2.77 16 26 H 0.10 2.82 7.56 -2.39 -0.02 2.80 16 27 H 0.11 4.36 7.52 -2.91 -0.02 4.34 16 28 H 0.16 3.39 8.06 -2.91 -0.02 3.37 16 29 H 0.16 2.84 8.06 -2.91 -0.02 2.81 16 30 H 0.41 5.16 9.06 -74.06 -0.67 4.49 16 31 H 0.14 4.10 7.94 -2.91 -0.02 4.08 16 32 H 0.30 16.07 8.31 -92.71 -0.77 15.30 16 Total: -1.00 -77.82 295.58 -0.32 -78.14 By element: Atomic # 1 Polarization: 23.41 SS G_CDS: 0.47 Total: 23.88 kcal Atomic # 6 Polarization: -63.06 SS G_CDS: 3.57 Total: -59.48 kcal Atomic # 7 Polarization: -94.03 SS G_CDS: -0.68 Total: -94.72 kcal Atomic # 8 Polarization: -134.25 SS G_CDS: -5.43 Total: -139.68 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.15 kcal Atomic # 16 Polarization: 148.98 SS G_CDS: -0.27 Total: 148.71 kcal Total: -77.82 -0.32 -78.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233500936.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.651 kcal (2) G-P(sol) polarization free energy of solvation -77.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds