Wall clock time and date at job start Mon Mar 30 2020 05:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46494 * 120.00188 * 2 1 4 4 C 1.50707 * 109.47043 * 274.99696 * 3 2 1 5 5 H 1.07992 * 119.99730 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00001 * 180.02562 * 4 3 2 7 7 N 1.31524 * 119.99980 * 359.97438 * 6 4 3 8 8 Si 1.86794 * 120.00127 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47476 * 89.99731 * 8 6 4 10 10 H 1.48499 * 109.47223 * 210.00282 * 8 6 4 11 11 H 1.48502 * 109.47129 * 329.99623 * 8 6 4 12 12 S 1.65597 * 119.99755 * 179.97438 * 2 1 3 13 13 O 1.42097 * 106.40225 * 156.46208 * 12 2 1 14 14 O 1.42101 * 106.40154 * 23.54110 * 12 2 1 15 15 C 1.76200 * 107.22021 * 270.00085 * 12 2 1 16 16 N 1.31817 * 119.67018 * 330.00512 * 15 12 2 17 17 C 1.31853 * 121.80302 * 179.97438 * 16 15 12 18 18 C 1.38282 * 120.92657 * 359.97438 * 17 16 15 19 19 C 1.38490 * 119.23858 * 0.28393 * 18 17 16 20 20 C 1.38889 * 119.67854 * 149.97564 * 15 12 2 21 21 N 1.39719 * 120.48590 * 0.02562 * 20 15 12 22 22 H 1.08996 * 109.47069 * 270.00546 * 1 2 3 23 23 H 1.09002 * 109.46704 * 30.00233 * 1 2 3 24 24 H 1.08996 * 109.47201 * 150.00050 * 1 2 3 25 25 H 1.09003 * 109.47561 * 34.99821 * 3 2 1 26 26 H 1.09002 * 109.47578 * 155.00164 * 3 2 1 27 27 H 0.97001 * 119.99897 * 180.02562 * 7 6 4 28 28 H 1.07998 * 119.53841 * 180.02562 * 17 16 15 29 29 H 1.08002 * 120.37698 * 179.97438 * 18 17 16 30 30 H 1.08004 * 120.81988 * 179.70382 * 19 18 17 31 31 H 0.96996 * 120.00103 * 0.02562 * 21 20 15 32 32 H 0.97000 * 119.99577 * 179.97438 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3416 1.7656 -1.4155 5 1 1.9291 1.1933 -2.2332 6 6 3.0008 2.9502 -1.6665 7 7 3.5036 3.6468 -0.6707 8 14 3.1787 3.5665 -3.4209 9 1 2.0184 4.4277 -3.7631 10 1 4.4324 4.3527 -3.5446 11 1 3.2269 2.4088 -4.3497 12 16 2.2930 -1.4341 0.0006 13 8 3.5759 -1.1571 -0.5439 14 8 1.4113 -2.4067 -0.5434 15 6 2.5537 -1.8852 1.6839 16 7 2.6725 -0.9452 2.6004 17 6 2.8680 -1.2351 3.8717 18 6 2.9561 -2.5483 4.2958 19 6 2.8424 -3.5685 3.3662 20 6 2.6315 -3.2275 2.0320 21 7 2.5051 -4.2209 1.0577 22 1 -0.3633 0.0001 1.0276 23 1 -0.3633 0.8900 -0.5139 24 1 -0.3633 -0.8899 -0.5138 25 1 1.6503 2.0043 0.5894 26 1 3.1859 1.1177 0.4343 27 1 3.9671 4.4804 -0.8473 28 1 2.9597 -0.4357 4.5920 29 1 3.1167 -2.7756 5.3393 30 1 2.9121 -4.6030 3.6685 31 1 2.3623 -3.9753 0.1303 32 1 2.5610 -5.1562 1.3088 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234261893.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:20 Heat of formation + Delta-G solvation = -57.990225 kcal Electronic energy + Delta-G solvation = -19197.586946 eV Core-core repulsion = 16091.292003 eV Total energy + Delta-G solvation = -3106.294943 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.17720 -38.43495 -37.28300 -37.15400 -36.13243 -34.48699 -33.20164 -30.22507 -29.65658 -26.80492 -25.32798 -24.31135 -23.93546 -20.30355 -19.19086 -18.98172 -18.38270 -18.04906 -17.80917 -17.26056 -16.49214 -16.17700 -15.95688 -15.42325 -15.08190 -14.90829 -14.32276 -14.04260 -13.93453 -13.69200 -13.36609 -13.22756 -13.02978 -12.93097 -12.58551 -12.46616 -12.44805 -12.32113 -11.94717 -11.72856 -10.84139 -10.61421 -10.53347 -9.73845 -9.11150 -8.17115 -6.30507 -0.57741 -0.23647 0.38423 1.40360 1.43411 1.54091 1.86862 2.43048 2.45851 2.59716 2.70926 3.12922 3.40728 3.73964 3.82174 4.08758 4.12573 4.16423 4.50622 4.69840 4.73906 4.81613 5.05201 5.08391 5.25936 5.47224 5.53434 5.72263 5.91446 5.99879 6.12109 6.55479 6.78063 6.81681 7.37891 8.90895 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.029025 B = 0.006256 C = 0.005761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.467722 B = 4474.288928 C = 4858.702548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.983 5.983 3 C 0.280 3.720 4 C -0.553 4.553 5 H 0.055 0.945 6 C 0.009 3.991 7 N -0.925 5.925 8 Si 0.962 3.038 9 H -0.263 1.263 10 H -0.278 1.278 11 H -0.272 1.272 12 S 2.704 3.296 13 O -0.990 6.990 14 O -0.978 6.978 15 C -0.552 4.552 16 N -0.398 5.398 17 C 0.012 3.988 18 C -0.057 4.057 19 C -0.163 4.163 20 C 0.240 3.760 21 N -0.857 5.857 22 H 0.062 0.938 23 H 0.078 0.922 24 H 0.081 0.919 25 H 0.026 0.974 26 H 0.013 0.987 27 H 0.268 0.732 28 H 0.184 0.816 29 H 0.193 0.807 30 H 0.186 0.814 31 H 0.403 0.597 32 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.033 -15.706 11.014 19.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.823 5.823 3 C 0.156 3.844 4 C -0.592 4.592 5 H 0.074 0.926 6 C -0.190 4.190 7 N -0.565 5.565 8 Si 0.786 3.214 9 H -0.188 1.188 10 H -0.203 1.203 11 H -0.197 1.197 12 S 2.795 3.205 13 O -0.980 6.980 14 O -0.967 6.967 15 C -0.776 4.776 16 N -0.108 5.108 17 C -0.156 4.156 18 C -0.078 4.078 19 C -0.194 4.194 20 C 0.125 3.875 21 N -0.401 5.401 22 H 0.081 0.919 23 H 0.097 0.903 24 H 0.100 0.900 25 H 0.044 0.956 26 H 0.031 0.969 27 H 0.077 0.923 28 H 0.201 0.799 29 H 0.210 0.790 30 H 0.203 0.797 31 H 0.237 0.763 32 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -3.774 -15.148 9.949 18.512 hybrid contribution 0.303 -0.315 -0.165 0.468 sum -3.471 -15.464 9.784 18.625 Atomic orbital electron populations 1.21607 0.77739 1.04102 1.02180 1.56835 1.15516 1.21045 1.88861 1.18565 0.90336 0.79697 0.95771 1.21879 1.36501 1.06842 0.93975 0.92637 1.25830 0.94647 0.96690 1.01846 1.70052 1.37769 1.15673 1.33005 0.85505 0.78206 0.78348 0.79346 1.18774 1.20313 1.19698 1.01429 0.72688 0.72264 0.74124 1.93560 1.42499 1.84458 1.77493 1.93390 1.66029 1.59690 1.77563 1.32549 1.25799 0.96338 1.22933 1.67505 1.04899 1.35070 1.03348 1.23411 1.01938 0.98342 0.91859 1.22711 0.90522 0.91889 1.02646 1.21707 1.05380 1.03063 0.89284 1.18598 0.88849 0.87730 0.92349 1.43198 1.79284 1.08211 1.09398 0.91928 0.90287 0.90011 0.95628 0.96898 0.92347 0.79871 0.78991 0.79674 0.76322 0.74261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.28 10.68 127.77 1.36 4.64 16 2 N -0.98 -45.37 3.11 -543.22 -1.69 -47.06 16 3 C 0.28 15.56 5.08 85.64 0.43 16.00 16 4 C -0.55 -33.03 9.38 25.60 0.24 -32.79 16 5 H 0.06 3.27 7.81 -2.91 -0.02 3.25 16 6 C 0.01 0.54 5.46 84.65 0.46 1.00 16 7 N -0.93 -56.82 13.29 21.45 0.28 -56.53 16 8 Si 0.96 45.99 29.54 68.60 2.03 48.01 16 9 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 10 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 11 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 12 S 2.70 118.48 5.20 -56.49 -0.29 118.19 16 13 O -0.99 -52.65 16.99 -128.00 -2.17 -54.82 16 14 O -0.98 -39.30 13.92 -128.00 -1.78 -41.08 16 15 C -0.55 -20.48 6.79 84.85 0.58 -19.91 16 16 N -0.40 -14.73 10.23 -192.76 -1.97 -16.70 16 17 C 0.01 0.31 11.18 84.70 0.95 1.26 16 18 C -0.06 -1.00 10.10 22.34 0.23 -0.77 16 19 C -0.16 -3.09 10.05 22.59 0.23 -2.86 16 20 C 0.24 6.75 6.73 38.30 0.26 7.01 16 21 N -0.86 -20.40 8.86 -51.11 -0.45 -20.85 16 22 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 23 H 0.08 2.91 8.07 -2.39 -0.02 2.89 16 24 H 0.08 2.71 7.02 -2.39 -0.02 2.70 16 25 H 0.03 1.45 8.11 -2.39 -0.02 1.43 16 26 H 0.01 0.79 7.61 -2.39 -0.02 0.78 16 27 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 28 H 0.18 3.67 8.06 -2.91 -0.02 3.64 16 29 H 0.19 1.31 8.06 -2.91 -0.02 1.29 16 30 H 0.19 1.72 8.06 -2.91 -0.02 1.70 16 31 H 0.40 11.36 5.65 -92.71 -0.52 10.84 16 32 H 0.42 6.05 8.86 -92.71 -0.82 5.22 16 Total: -1.00 -80.93 291.63 -1.50 -82.43 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -0.18 Total: 14.85 kcal Atomic # 6 Polarization: -31.16 SS G_CDS: 4.73 Total: -26.42 kcal Atomic # 7 Polarization: -137.32 SS G_CDS: -3.83 Total: -141.15 kcal Atomic # 8 Polarization: -91.94 SS G_CDS: -3.96 Total: -95.90 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.01 kcal Atomic # 16 Polarization: 118.48 SS G_CDS: -0.29 Total: 118.19 kcal Total: -80.93 -1.50 -82.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234261893.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.436 kcal (2) G-P(sol) polarization free energy of solvation -80.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds