Wall clock time and date at job start Mon Mar 30 2020 05:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00125 * 2 1 4 4 H 1.48511 * 109.46759 * 269.99826 * 3 2 1 5 5 H 1.48496 * 109.47209 * 29.99949 * 3 2 1 6 6 H 1.48500 * 109.47218 * 150.00500 * 3 2 1 7 7 C 1.37879 * 119.99757 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00091 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99886 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.46173 * 96.86963 * 9 7 2 11 11 C 1.52723 * 109.33281 * 337.13357 * 9 7 2 12 12 S 1.81735 * 108.84316 * 182.42812 * 11 9 7 13 13 C 1.81746 * 102.30681 * 54.42614 * 12 11 9 14 14 C 1.53240 * 108.79564 * 305.45932 * 13 12 11 15 15 N 1.46376 * 109.46490 * 216.85542 * 9 7 2 16 16 C 1.34778 * 119.65190 * 5.09877 * 15 9 7 17 17 O 1.21277 * 119.99496 * 357.00678 * 16 15 9 18 18 C 1.50697 * 120.00251 * 177.01565 * 16 15 9 19 19 H 1.09003 * 110.91029 * 62.12876 * 18 16 15 20 20 C 1.55443 * 110.92390 * 185.74788 * 18 16 15 21 21 C 1.54951 * 100.99258 * 152.22997 * 20 18 16 22 22 O 1.43649 * 105.13089 * 323.60737 * 21 20 18 23 23 C 1.43240 * 109.97299 * 24.42612 * 22 21 20 24 24 H 0.96997 * 119.99752 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.65341 * 62.56113 * 11 9 7 26 26 H 1.08999 * 109.57678 * 302.25360 * 11 9 7 27 27 H 1.09004 * 109.58010 * 185.66580 * 13 12 11 28 28 H 1.09000 * 109.58307 * 65.25413 * 13 12 11 29 29 H 1.09002 * 109.47028 * 297.65118 * 14 13 12 30 30 H 1.09003 * 109.46378 * 177.66098 * 14 13 12 31 31 H 1.08997 * 111.05997 * 34.30969 * 20 18 16 32 32 H 1.09006 * 111.18643 * 270.19767 * 20 18 16 33 33 H 1.08998 * 110.30797 * 204.69425 * 21 20 18 34 34 H 1.08990 * 110.31075 * 82.51744 * 21 20 18 35 35 H 1.08998 * 109.82980 * 117.80379 * 23 22 21 36 36 H 1.08998 * 109.83216 * 238.68687 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 1.1754 -2.8749 -1.0209 11 6 -0.1516 -2.2731 0.5601 12 16 -1.0231 -3.8667 0.6213 13 6 0.1233 -4.8984 1.5829 14 6 1.5015 -4.8602 0.9140 15 7 1.9637 -3.4740 0.8268 16 6 3.0538 -3.0898 1.5200 17 8 3.4713 -1.9561 1.4140 18 6 3.7540 -4.0691 2.4265 19 1 4.1435 -4.9144 1.8592 20 6 4.8888 -3.3708 3.2271 21 6 4.9393 -4.2539 4.4993 22 8 3.5734 -4.6138 4.7605 23 6 2.8104 -4.5493 3.5499 24 1 -0.4849 0.8400 0.0004 25 1 -0.6969 -1.5830 -0.0837 26 1 -0.0805 -1.8566 1.5648 27 1 -0.2423 -5.9250 1.6078 28 1 0.1993 -4.5108 2.5988 29 1 1.4309 -5.2833 -0.0881 30 1 2.2084 -5.4423 1.5052 31 1 4.6199 -2.3434 3.4725 32 1 5.8338 -3.4081 2.6852 33 1 5.3483 -3.6882 5.3365 34 1 5.5374 -5.1466 4.3166 35 1 2.4186 -5.5370 3.3068 36 1 1.9877 -3.8442 3.6684 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259660469.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:09 Heat of formation + Delta-G solvation = -31.564795 kcal Electronic energy + Delta-G solvation = -20254.715449 eV Core-core repulsion = 17253.106742 eV Total energy + Delta-G solvation = -3001.608707 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.18543 -38.31267 -35.66471 -33.91009 -31.97570 -30.33090 -29.54600 -28.33180 -25.57364 -23.32663 -22.79289 -22.39294 -20.78241 -18.63297 -17.65702 -16.63695 -16.20525 -15.69849 -15.18401 -14.77203 -14.55771 -14.37490 -13.96070 -13.75186 -13.26262 -12.90423 -12.82688 -12.57271 -12.36293 -11.94890 -11.60895 -11.31118 -11.19429 -10.99656 -10.95066 -10.78491 -10.66949 -10.52359 -10.00720 -9.65399 -9.50192 -9.02541 -8.66885 -7.95411 -7.64226 -6.78656 -5.87876 -4.08387 2.63904 3.27724 3.34774 3.37218 3.47287 3.64487 3.69800 3.98024 4.42301 4.49319 4.86768 4.98275 5.16846 5.20959 5.21753 5.26510 5.31098 5.46883 5.55864 5.71200 5.73186 5.79733 5.90850 5.99042 6.15615 6.29057 6.60915 6.65293 6.96438 7.06851 7.53157 7.67272 7.79029 8.24687 8.46825 8.93693 9.17984 9.54985 10.86778 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.016018 B = 0.009336 C = 0.006413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.633239 B = 2998.435888 C = 4364.855902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.043 3.957 3 Si 0.919 3.081 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.270 1.270 7 C -0.478 4.478 8 H 0.114 0.886 9 C 0.256 3.744 10 H 0.036 0.964 11 C -0.043 4.043 12 S -0.367 6.367 13 C -0.095 4.095 14 C 0.102 3.898 15 N -0.609 5.609 16 C 0.516 3.484 17 O -0.487 6.487 18 C -0.157 4.157 19 H 0.100 0.900 20 C -0.134 4.134 21 C 0.050 3.950 22 O -0.385 6.385 23 C 0.064 3.936 24 H 0.262 0.738 25 H 0.188 0.812 26 H 0.061 0.939 27 H 0.096 0.904 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.658 -9.794 4.546 12.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.154 4.154 3 Si 0.747 3.253 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.195 1.195 7 C -0.518 4.518 8 H 0.131 0.869 9 C 0.155 3.845 10 H 0.054 0.946 11 C -0.190 4.190 12 S -0.141 6.141 13 C -0.244 4.244 14 C -0.024 4.024 15 N -0.343 5.343 16 C 0.301 3.699 17 O -0.360 6.360 18 C -0.179 4.179 19 H 0.118 0.882 20 C -0.172 4.172 21 C -0.026 4.026 22 O -0.305 6.305 23 C -0.013 4.013 24 H 0.075 0.925 25 H 0.203 0.797 26 H 0.080 0.920 27 H 0.114 0.886 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.111 0.889 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.646 -9.340 4.235 11.259 hybrid contribution 1.366 0.846 0.486 1.679 sum 6.013 -8.494 4.721 11.427 Atomic orbital electron populations 1.69140 1.05822 1.25303 1.54701 1.25046 0.94892 1.00254 0.95164 0.86105 0.79796 0.81526 0.77848 1.20864 1.21480 1.19496 1.22465 0.96139 0.88071 1.45076 0.86926 1.19335 0.88771 0.87505 0.88884 0.94604 1.25765 0.99798 0.86546 1.06920 1.86897 1.36795 1.18283 1.72167 1.23624 0.97577 1.02097 1.01151 1.21750 0.94511 0.84924 1.01200 1.48599 1.28336 1.09733 1.47607 1.20071 0.81092 0.88084 0.80636 1.90786 1.64652 1.18716 1.61889 1.23170 0.97368 0.99878 0.97498 0.88180 1.23146 0.98254 1.00942 0.94868 1.23409 0.83827 0.97531 0.97819 1.88385 1.20560 1.90209 1.31317 1.23247 0.94207 1.00776 0.83043 0.92538 0.79662 0.91976 0.88603 0.90688 0.90737 0.90299 0.88890 0.89721 0.89726 0.92338 0.90936 0.90830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.29 9.16 55.43 0.51 -23.78 16 2 C 0.04 1.15 5.33 -17.82 -0.10 1.06 16 3 Si 0.92 21.87 29.54 -169.99 -5.02 16.85 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.48 -12.74 7.00 -34.44 -0.24 -12.98 16 8 H 0.11 3.15 5.15 -55.86 -0.29 2.86 16 9 C 0.26 6.12 3.20 -69.29 -0.22 5.90 16 10 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 11 C -0.04 -1.03 4.43 37.02 0.16 -0.87 16 12 S -0.37 -7.46 22.29 -107.50 -2.40 -9.86 16 13 C -0.10 -1.53 6.59 37.28 0.25 -1.28 16 14 C 0.10 1.59 5.46 -3.98 -0.02 1.57 16 15 N -0.61 -12.16 2.80 -167.63 -0.47 -12.63 16 16 C 0.52 10.30 6.84 -10.99 -0.08 10.23 16 17 O -0.49 -11.71 11.32 5.56 0.06 -11.65 16 18 C -0.16 -2.34 2.40 -89.75 -0.22 -2.55 16 19 H 0.10 1.25 7.69 -51.93 -0.40 0.85 16 20 C -0.13 -1.87 6.24 -24.40 -0.15 -2.02 16 21 C 0.05 0.61 7.78 38.19 0.30 0.91 16 22 O -0.39 -5.72 11.36 -35.23 -0.40 -6.12 16 23 C 0.06 0.92 5.76 37.88 0.22 1.14 16 24 H 0.26 6.80 8.31 -40.82 -0.34 6.47 16 25 H 0.19 4.92 5.25 -62.79 -0.33 4.59 16 26 H 0.06 1.64 8.02 -51.93 -0.42 1.22 16 27 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.07 1.23 7.10 -51.93 -0.37 0.86 16 29 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.08 0.99 4.30 -51.93 -0.22 0.77 16 31 H 0.09 1.52 7.47 -51.93 -0.39 1.13 16 32 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.88 6.82 -51.93 -0.35 0.53 16 36 H 0.07 1.22 7.10 -51.93 -0.37 0.85 16 LS Contribution 284.86 15.07 4.29 4.29 Total: -1.00 -28.89 284.86 -8.33 -37.21 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -4.81 Total: 4.59 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: -0.10 Total: 1.10 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: 0.04 Total: -36.41 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -0.34 Total: -17.77 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 16 Polarization: -7.46 SS G_CDS: -2.40 Total: -9.86 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -28.89 -8.33 -37.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259660469.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.649 kcal (2) G-P(sol) polarization free energy of solvation -28.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds