Wall clock time and date at job start Mon Mar 30 2020 05:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00125 * 2 1 4 4 H 1.48511 * 109.46759 * 269.99826 * 3 2 1 5 5 H 1.48496 * 109.47209 * 29.99949 * 3 2 1 6 6 H 1.48500 * 109.47218 * 150.00500 * 3 2 1 7 7 C 1.37879 * 119.99757 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00091 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99886 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.46173 * 96.86963 * 9 7 2 11 11 C 1.52723 * 109.33281 * 337.13357 * 9 7 2 12 12 S 1.81735 * 108.84316 * 182.42812 * 11 9 7 13 13 C 1.81746 * 102.30681 * 54.42614 * 12 11 9 14 14 C 1.53240 * 108.79564 * 305.45932 * 13 12 11 15 15 N 1.46376 * 109.46490 * 216.85542 * 9 7 2 16 16 C 1.34778 * 119.65190 * 5.09877 * 15 9 7 17 17 O 1.21277 * 119.99496 * 357.00678 * 16 15 9 18 18 C 1.50697 * 120.00251 * 177.01565 * 16 15 9 19 19 H 1.09003 * 110.91029 * 62.12876 * 18 16 15 20 20 C 1.55443 * 110.92390 * 185.74788 * 18 16 15 21 21 C 1.54951 * 100.99258 * 152.22997 * 20 18 16 22 22 O 1.43649 * 105.13089 * 323.60737 * 21 20 18 23 23 C 1.43240 * 109.97299 * 24.42612 * 22 21 20 24 24 H 0.96997 * 119.99752 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.65341 * 62.56113 * 11 9 7 26 26 H 1.08999 * 109.57678 * 302.25360 * 11 9 7 27 27 H 1.09004 * 109.58010 * 185.66580 * 13 12 11 28 28 H 1.09000 * 109.58307 * 65.25413 * 13 12 11 29 29 H 1.09002 * 109.47028 * 297.65118 * 14 13 12 30 30 H 1.09003 * 109.46378 * 177.66098 * 14 13 12 31 31 H 1.08997 * 111.05997 * 34.30969 * 20 18 16 32 32 H 1.09006 * 111.18643 * 270.19767 * 20 18 16 33 33 H 1.08998 * 110.30797 * 204.69425 * 21 20 18 34 34 H 1.08990 * 110.31075 * 82.51744 * 21 20 18 35 35 H 1.08998 * 109.82980 * 117.80379 * 23 22 21 36 36 H 1.08998 * 109.83216 * 238.68687 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 1.1754 -2.8749 -1.0209 11 6 -0.1516 -2.2731 0.5601 12 16 -1.0231 -3.8667 0.6213 13 6 0.1233 -4.8984 1.5829 14 6 1.5015 -4.8602 0.9140 15 7 1.9637 -3.4740 0.8268 16 6 3.0538 -3.0898 1.5200 17 8 3.4713 -1.9561 1.4140 18 6 3.7540 -4.0691 2.4265 19 1 4.1435 -4.9144 1.8592 20 6 4.8888 -3.3708 3.2271 21 6 4.9393 -4.2539 4.4993 22 8 3.5734 -4.6138 4.7605 23 6 2.8104 -4.5493 3.5499 24 1 -0.4849 0.8400 0.0004 25 1 -0.6969 -1.5830 -0.0837 26 1 -0.0805 -1.8566 1.5648 27 1 -0.2423 -5.9250 1.6078 28 1 0.1993 -4.5108 2.5988 29 1 1.4309 -5.2833 -0.0881 30 1 2.2084 -5.4423 1.5052 31 1 4.6199 -2.3434 3.4725 32 1 5.8338 -3.4081 2.6852 33 1 5.3483 -3.6882 5.3365 34 1 5.5374 -5.1466 4.3166 35 1 2.4186 -5.5370 3.3068 36 1 1.9877 -3.8442 3.6684 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259660469.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:09 Heat of formation + Delta-G solvation = -50.771498 kcal Electronic energy + Delta-G solvation = -20255.548314 eV Core-core repulsion = 17253.106742 eV Total energy + Delta-G solvation = -3002.441572 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.57995 -39.62498 -37.30901 -35.69977 -33.28846 -31.91958 -30.84120 -29.82483 -27.55889 -24.71449 -24.23327 -23.52091 -22.33877 -20.17565 -19.32176 -17.91595 -17.47397 -17.36952 -16.73173 -16.35753 -16.10259 -15.79685 -15.51215 -15.12800 -14.70279 -14.48986 -14.30933 -14.07506 -13.97249 -13.42614 -12.97126 -12.85052 -12.77426 -12.50953 -12.43092 -12.32727 -12.22361 -11.93621 -11.75101 -11.46308 -10.91720 -10.60363 -10.44790 -9.67951 -9.38566 -8.46504 -7.86764 -6.13510 1.11043 1.35799 1.39380 1.53096 1.83875 1.89493 2.20992 2.46994 2.87954 3.17020 3.32914 3.65011 3.88363 3.95937 4.03799 4.14163 4.25918 4.28308 4.35362 4.57909 4.62525 4.68185 4.73331 4.76310 4.85477 4.88894 4.94492 5.16135 5.24484 5.65047 5.71018 5.93561 5.95816 6.25312 6.82935 6.90908 7.41073 7.65631 8.83422 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.016018 B = 0.009336 C = 0.006413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.633239 B = 2998.435888 C = 4364.855902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.001 4.001 3 Si 0.967 3.033 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.283 1.283 7 C -0.491 4.491 8 H 0.099 0.901 9 C 0.259 3.741 10 H 0.022 0.978 11 C -0.030 4.030 12 S -0.374 6.374 13 C -0.084 4.084 14 C 0.099 3.901 15 N -0.614 5.614 16 C 0.505 3.495 17 O -0.538 6.538 18 C -0.146 4.146 19 H 0.140 0.860 20 C -0.136 4.136 21 C 0.054 3.946 22 O -0.401 6.401 23 C 0.069 3.931 24 H 0.259 0.741 25 H 0.161 0.839 26 H 0.025 0.975 27 H 0.139 0.861 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.123 0.877 31 H 0.057 0.943 32 H 0.102 0.898 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.107 0.893 36 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.787 -12.897 5.402 15.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.195 4.195 3 Si 0.794 3.206 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.209 1.209 7 C -0.530 4.530 8 H 0.116 0.884 9 C 0.156 3.844 10 H 0.040 0.960 11 C -0.179 4.179 12 S -0.149 6.149 13 C -0.233 4.233 14 C -0.025 4.025 15 N -0.347 5.347 16 C 0.293 3.707 17 O -0.415 6.415 18 C -0.167 4.167 19 H 0.158 0.842 20 C -0.174 4.174 21 C -0.022 4.022 22 O -0.321 6.321 23 C -0.008 4.008 24 H 0.071 0.929 25 H 0.177 0.823 26 H 0.044 0.956 27 H 0.157 0.843 28 H 0.093 0.907 29 H 0.104 0.896 30 H 0.141 0.859 31 H 0.076 0.924 32 H 0.121 0.879 33 H 0.113 0.887 34 H 0.110 0.890 35 H 0.125 0.875 36 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 5.767 -12.489 5.096 14.669 hybrid contribution 1.037 1.696 0.270 2.006 sum 6.804 -10.793 5.366 13.841 Atomic orbital electron populations 1.69451 1.06331 1.25403 1.55396 1.25667 0.95670 1.02574 0.95589 0.85384 0.78120 0.79077 0.78027 1.19767 1.21202 1.20871 1.22602 0.95775 0.89735 1.44892 0.88396 1.18984 0.88937 0.87551 0.88927 0.96034 1.25052 1.00001 0.88895 1.03916 1.86759 1.37956 1.16733 1.73404 1.23814 0.96533 1.02971 0.99988 1.22056 0.95075 0.82627 1.02757 1.48475 1.28256 1.11016 1.46913 1.20900 0.80742 0.88523 0.80506 1.90748 1.65909 1.21325 1.63544 1.23114 0.97240 0.99501 0.96857 0.84228 1.23152 0.98699 0.99410 0.96171 1.23581 0.83003 0.98543 0.97041 1.88371 1.21915 1.90291 1.31551 1.23216 0.93211 1.01663 0.82671 0.92939 0.82340 0.95611 0.84258 0.90702 0.89643 0.85938 0.92438 0.87930 0.88666 0.89020 0.87489 0.93840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.72 9.16 21.45 0.20 -51.53 16 2 C 0.00 -0.04 5.33 84.65 0.45 0.41 16 3 Si 0.97 46.59 29.54 68.60 2.03 48.61 16 4 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 5 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 6 H -0.28 -14.10 7.11 99.48 0.71 -13.40 16 7 C -0.49 -27.23 7.00 25.60 0.18 -27.05 16 8 H 0.10 5.72 5.15 -56.38 -0.29 5.43 16 9 C 0.26 12.72 3.20 44.18 0.14 12.86 16 10 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 11 C -0.03 -1.51 4.43 71.89 0.32 -1.19 16 12 S -0.37 -14.91 22.29 -56.49 -1.26 -16.17 16 13 C -0.08 -2.41 6.59 72.06 0.47 -1.93 16 14 C 0.10 2.72 5.46 86.48 0.47 3.19 16 15 N -0.61 -24.00 2.80 -802.65 -2.25 -26.25 16 16 C 0.51 19.90 6.84 87.66 0.60 20.50 16 17 O -0.54 -26.69 11.32 -3.02 -0.03 -26.73 16 18 C -0.15 -3.89 2.40 -10.23 -0.02 -3.92 16 19 H 0.14 2.70 7.69 -2.39 -0.02 2.68 16 20 C -0.14 -3.51 6.24 32.10 0.20 -3.31 16 21 C 0.05 1.11 7.78 72.65 0.57 1.67 16 22 O -0.40 -10.56 11.36 -148.98 -1.69 -12.25 16 23 C 0.07 1.75 5.76 72.45 0.42 2.16 16 24 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 25 H 0.16 8.84 5.25 -23.83 -0.13 8.72 16 26 H 0.03 1.41 8.02 -2.39 -0.02 1.39 16 27 H 0.14 2.90 8.14 -2.39 -0.02 2.88 16 28 H 0.07 2.22 7.10 -2.39 -0.02 2.20 16 29 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.12 2.35 4.30 -2.39 -0.01 2.34 16 31 H 0.06 1.90 7.47 -2.39 -0.02 1.88 16 32 H 0.10 2.24 8.14 -2.38 -0.02 2.22 16 33 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.11 1.97 6.82 -2.39 -0.02 1.95 16 36 H 0.04 1.37 7.10 -2.39 -0.02 1.35 16 Total: -1.00 -67.71 284.86 1.49 -66.22 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: 0.70 Total: 14.68 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: 3.80 Total: 3.40 kcal Atomic # 7 Polarization: -75.73 SS G_CDS: -2.05 Total: -77.78 kcal Atomic # 8 Polarization: -37.25 SS G_CDS: -1.73 Total: -38.98 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.61 kcal Atomic # 16 Polarization: -14.91 SS G_CDS: -1.26 Total: -16.17 kcal Total: -67.71 1.49 -66.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259660469.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.451 kcal (2) G-P(sol) polarization free energy of solvation -67.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds