Wall clock time and date at job start Mon Mar 30 2020 05:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00125 * 2 1 4 4 H 1.48503 * 109.46845 * 269.99927 * 3 2 1 5 5 H 1.48503 * 109.47399 * 29.99417 * 3 2 1 6 6 H 1.48498 * 109.47295 * 150.00023 * 3 2 1 7 7 C 1.37877 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00146 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99842 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.46995 * 180.02562 * 9 7 2 11 11 N 1.30521 * 126.34466 * 304.68493 * 10 9 7 12 12 N 1.28592 * 109.67196 * 179.82826 * 11 10 9 13 13 C 1.30518 * 109.67258 * 0.44813 * 12 11 10 14 14 C 1.50701 * 126.34603 * 179.73052 * 13 12 11 15 15 H 1.08998 * 109.64585 * 25.70121 * 14 13 12 16 16 C 1.53872 * 109.64999 * 265.27041 * 14 13 12 17 17 C 1.55050 * 106.62740 * 192.96880 * 16 14 13 18 18 S 1.83286 * 102.56665 * 42.43031 * 17 16 14 19 19 O 1.42100 * 109.34820 * 90.18918 * 18 17 16 20 20 O 1.42097 * 109.35445 * 223.38779 * 18 17 16 21 21 C 1.54166 * 109.64811 * 146.12605 * 14 13 12 22 22 N 1.35489 * 126.34748 * 125.00290 * 10 9 7 23 23 H 0.96997 * 126.98480 * 359.97438 * 22 10 9 24 24 H 0.97000 * 119.99838 * 179.97438 * 1 2 3 25 25 H 1.09008 * 109.47053 * 299.99554 * 9 7 2 26 26 H 1.08991 * 109.47398 * 59.99511 * 9 7 2 27 27 H 1.08999 * 110.03036 * 312.25958 * 16 14 13 28 28 H 1.09004 * 110.02750 * 73.62429 * 16 14 13 29 29 H 1.08996 * 110.79160 * 160.70276 * 17 16 14 30 30 H 1.09002 * 110.78616 * 283.97456 * 17 16 14 31 31 H 1.08997 * 110.32160 * 266.66708 * 21 14 13 32 32 H 1.09010 * 110.31738 * 28.86044 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2304 -3.6446 0.0018 11 7 3.1884 -3.8441 -0.8618 12 7 3.8314 -4.9148 -0.5554 13 6 3.3068 -5.4520 0.5121 14 6 3.7632 -6.7174 1.1916 15 1 4.8189 -6.8867 0.9798 16 6 2.9350 -7.9082 0.6779 17 6 3.2173 -9.0921 1.6384 18 16 3.1783 -8.2878 3.2849 19 8 1.8535 -8.3279 3.7972 20 8 4.2584 -8.7720 4.0712 21 6 3.5535 -6.5930 2.7138 22 7 2.2757 -4.6613 0.8962 23 1 1.6894 -4.7957 1.6571 24 1 -0.4850 -0.8401 -0.0004 25 1 0.6241 -2.5567 0.8904 26 1 0.6247 -2.5570 -0.8895 27 1 1.8739 -7.6595 0.6938 28 1 3.2423 -8.1671 -0.3354 29 1 2.4372 -9.8492 1.5591 30 1 4.1972 -9.5262 1.4398 31 1 4.4617 -6.2266 3.1923 32 1 2.7172 -5.9272 2.9275 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260042193.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:13 Heat of formation + Delta-G solvation = -7.637140 kcal Electronic energy + Delta-G solvation = -18402.442773 eV Core-core repulsion = 15298.331304 eV Total energy + Delta-G solvation = -3104.111469 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.74162 -37.48120 -37.24438 -36.36405 -34.07239 -33.20880 -31.38311 -29.96465 -27.66733 -25.52641 -23.53239 -22.76424 -21.23991 -20.49431 -19.22826 -17.87957 -17.22304 -16.85141 -16.74254 -15.99927 -15.48402 -15.03333 -14.56706 -14.43168 -13.90413 -13.57674 -12.91327 -12.73945 -12.72384 -12.51662 -12.39469 -12.18321 -12.04512 -11.64240 -11.28892 -11.13638 -10.82486 -10.76167 -10.66549 -10.39486 -10.15733 -9.85646 -9.11914 -8.56762 -8.34228 -6.54030 -4.25939 -0.39646 2.01757 2.21803 2.98132 3.15527 3.35236 3.41573 3.42909 3.57267 3.59619 3.86239 3.97842 4.21792 4.29344 4.40137 4.44751 4.69106 4.95303 5.11959 5.19880 5.21923 5.34941 5.43573 5.49737 5.75597 5.97051 6.49152 6.78894 6.93694 7.42270 7.83937 8.30677 8.66455 9.24288 9.42665 10.85714 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.035320 B = 0.004020 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.572413 B = 6963.570867 C = 7188.742792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.021 3.979 3 Si 1.077 2.923 4 H -0.284 1.284 5 H -0.283 1.283 6 H -0.288 1.288 7 C -0.591 4.591 8 H 0.059 0.941 9 C 0.082 3.918 10 C 0.245 3.755 11 N -0.297 5.297 12 N -0.286 5.286 13 C 0.142 3.858 14 C 0.018 3.982 15 H 0.125 0.875 16 C -0.115 4.115 17 C -0.584 4.584 18 S 2.396 3.604 19 O -0.933 6.933 20 O -0.935 6.935 21 C -0.601 4.601 22 N -0.587 5.587 23 H 0.421 0.579 24 H 0.268 0.732 25 H 0.028 0.972 26 H 0.046 0.954 27 H 0.088 0.912 28 H 0.110 0.890 29 H 0.142 0.858 30 H 0.143 0.857 31 H 0.150 0.850 32 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.898 -18.079 5.405 19.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.183 4.183 3 Si 0.904 3.096 4 H -0.211 1.211 5 H -0.209 1.209 6 H -0.214 1.214 7 C -0.630 4.630 8 H 0.078 0.922 9 C 0.043 3.957 10 C -0.023 4.023 11 N -0.136 5.136 12 N -0.127 5.127 13 C -0.127 4.127 14 C -0.004 4.004 15 H 0.143 0.857 16 C -0.155 4.155 17 C -0.714 4.714 18 S 2.578 3.422 19 O -0.930 6.930 20 O -0.932 6.932 21 C -0.730 4.730 22 N -0.201 5.201 23 H 0.260 0.740 24 H 0.078 0.922 25 H 0.046 0.954 26 H 0.064 0.936 27 H 0.107 0.893 28 H 0.128 0.872 29 H 0.160 0.840 30 H 0.161 0.839 31 H 0.169 0.831 32 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 5.561 -16.552 4.987 18.159 hybrid contribution -0.802 -1.546 0.729 1.888 sum 4.758 -18.098 5.716 19.566 Atomic orbital electron populations 1.70808 1.06831 1.30486 1.46197 1.25913 0.96370 1.02786 0.93261 0.83413 0.74540 0.74482 0.77119 1.21063 1.20913 1.21394 1.21807 0.94861 0.89924 1.56372 0.92246 1.18057 0.91239 0.88161 0.98253 1.25866 0.98908 0.90926 0.86587 1.74334 1.06145 1.09832 1.23333 1.74179 1.22766 1.04942 1.10833 1.23789 0.92582 0.97680 0.98623 1.19803 1.03022 0.88938 0.88668 0.85691 1.22322 1.01651 0.89814 1.01679 1.30637 1.12045 1.08533 1.20211 1.08935 0.75489 0.79214 0.78551 1.93643 1.36604 1.85489 1.77279 1.93628 1.55359 1.77877 1.66308 1.30753 1.13220 1.24102 1.04969 1.44050 1.27844 1.21437 1.26747 0.73978 0.92210 0.95393 0.93600 0.89326 0.87184 0.84018 0.83873 0.83139 0.84944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.19 13.65 55.43 0.76 -25.43 16 2 C 0.02 0.58 5.46 -17.82 -0.10 0.48 16 3 Si 1.08 24.78 29.90 -169.99 -5.08 19.70 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 6 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.59 -16.21 9.08 -34.44 -0.31 -16.53 16 8 H 0.06 1.70 7.74 -52.49 -0.41 1.29 16 9 C 0.08 1.96 4.91 -29.04 -0.14 1.82 16 10 C 0.24 5.22 7.50 -154.99 -1.16 4.06 16 11 N -0.30 -6.83 12.19 32.80 0.40 -6.43 16 12 N -0.29 -5.61 12.21 32.80 0.40 -5.21 16 13 C 0.14 2.14 7.00 -154.99 -1.09 1.05 16 14 C 0.02 0.16 3.09 -90.71 -0.28 -0.12 16 15 H 0.13 0.94 8.14 -51.93 -0.42 0.52 16 16 C -0.12 -0.79 5.78 -25.19 -0.15 -0.94 16 17 C -0.58 -2.80 7.31 38.24 0.28 -2.52 16 18 S 2.40 17.88 6.10 -107.50 -0.66 17.22 16 19 O -0.93 -10.39 18.14 -57.71 -1.05 -11.44 16 20 O -0.93 -10.07 18.15 -57.71 -1.05 -11.12 16 21 C -0.60 -4.52 6.72 37.77 0.25 -4.26 16 22 N -0.59 -9.39 5.86 -7.60 -0.04 -9.43 16 23 H 0.42 5.19 7.78 -40.82 -0.32 4.87 16 24 H 0.27 7.53 7.22 -40.82 -0.29 7.24 16 25 H 0.03 0.64 8.01 -51.92 -0.42 0.23 16 26 H 0.05 1.14 8.01 -51.93 -0.42 0.73 16 27 H 0.09 0.61 8.11 -51.93 -0.42 0.19 16 28 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.14 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.14 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.15 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.13 0.99 6.47 -51.92 -0.34 0.65 16 LS Contribution 288.41 15.07 4.35 4.35 Total: -1.00 -37.93 288.41 -8.18 -46.11 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: -3.52 Total: -1.36 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: -2.69 Total: -16.96 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: 1.51 Total: -46.51 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: -2.09 Total: -22.56 kcal Atomic # 14 Polarization: 24.78 SS G_CDS: -5.08 Total: 19.70 kcal Atomic # 16 Polarization: 17.88 SS G_CDS: -0.66 Total: 17.22 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -37.93 -8.18 -46.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260042193.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.476 kcal (2) G-P(sol) polarization free energy of solvation -37.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds