Wall clock time and date at job start Mon Mar 30 2020 05:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00125 * 2 1 4 4 H 1.48503 * 109.46845 * 269.99927 * 3 2 1 5 5 H 1.48503 * 109.47399 * 29.99417 * 3 2 1 6 6 H 1.48498 * 109.47295 * 150.00023 * 3 2 1 7 7 C 1.37877 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00146 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99842 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.46995 * 180.02562 * 9 7 2 11 11 N 1.30521 * 126.34466 * 304.68493 * 10 9 7 12 12 N 1.28592 * 109.67196 * 179.82826 * 11 10 9 13 13 C 1.30518 * 109.67258 * 0.44813 * 12 11 10 14 14 C 1.50701 * 126.34603 * 179.73052 * 13 12 11 15 15 H 1.08998 * 109.64585 * 25.70121 * 14 13 12 16 16 C 1.53872 * 109.64999 * 265.27041 * 14 13 12 17 17 C 1.55050 * 106.62740 * 192.96880 * 16 14 13 18 18 S 1.83286 * 102.56665 * 42.43031 * 17 16 14 19 19 O 1.42100 * 109.34820 * 90.18918 * 18 17 16 20 20 O 1.42097 * 109.35445 * 223.38779 * 18 17 16 21 21 C 1.54166 * 109.64811 * 146.12605 * 14 13 12 22 22 N 1.35489 * 126.34748 * 125.00290 * 10 9 7 23 23 H 0.96997 * 126.98480 * 359.97438 * 22 10 9 24 24 H 0.97000 * 119.99838 * 179.97438 * 1 2 3 25 25 H 1.09008 * 109.47053 * 299.99554 * 9 7 2 26 26 H 1.08991 * 109.47398 * 59.99511 * 9 7 2 27 27 H 1.08999 * 110.03036 * 312.25958 * 16 14 13 28 28 H 1.09004 * 110.02750 * 73.62429 * 16 14 13 29 29 H 1.08996 * 110.79160 * 160.70276 * 17 16 14 30 30 H 1.09002 * 110.78616 * 283.97456 * 17 16 14 31 31 H 1.08997 * 110.32160 * 266.66708 * 21 14 13 32 32 H 1.09010 * 110.31738 * 28.86044 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2304 -3.6446 0.0018 11 7 3.1884 -3.8441 -0.8618 12 7 3.8314 -4.9148 -0.5554 13 6 3.3068 -5.4520 0.5121 14 6 3.7632 -6.7174 1.1916 15 1 4.8189 -6.8867 0.9798 16 6 2.9350 -7.9082 0.6779 17 6 3.2173 -9.0921 1.6384 18 16 3.1783 -8.2878 3.2849 19 8 1.8535 -8.3279 3.7972 20 8 4.2584 -8.7720 4.0712 21 6 3.5535 -6.5930 2.7138 22 7 2.2757 -4.6613 0.8962 23 1 1.6894 -4.7957 1.6571 24 1 -0.4850 -0.8401 -0.0004 25 1 0.6241 -2.5567 0.8904 26 1 0.6247 -2.5570 -0.8895 27 1 1.8739 -7.6595 0.6938 28 1 3.2423 -8.1671 -0.3354 29 1 2.4372 -9.8492 1.5591 30 1 4.1972 -9.5262 1.4398 31 1 4.4617 -6.2266 3.1923 32 1 2.7172 -5.9272 2.9275 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260042193.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:12 Heat of formation + Delta-G solvation = -37.081448 kcal Electronic energy + Delta-G solvation = -18403.719574 eV Core-core repulsion = 15298.331304 eV Total energy + Delta-G solvation = -3105.388270 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.19974 -38.20957 -37.99754 -37.08822 -36.02366 -34.69092 -32.75164 -30.92873 -29.21357 -26.47439 -25.46805 -23.78728 -22.61280 -21.68808 -19.84977 -19.28104 -18.83081 -17.76547 -17.57047 -16.94340 -16.66558 -16.05922 -15.72555 -15.46979 -15.12711 -15.06100 -14.33587 -14.00455 -13.42750 -13.34055 -13.31400 -13.16935 -13.12058 -12.96387 -12.58134 -12.52143 -12.19538 -11.95289 -11.92657 -11.85472 -11.44341 -11.25554 -11.03863 -10.63339 -9.99844 -8.73503 -6.46058 -0.98888 0.77418 1.50698 1.53756 1.60881 1.71022 1.80537 1.82934 2.53480 2.55440 2.89197 3.09386 3.18195 3.20327 3.55748 3.62094 3.80705 3.89070 4.05483 4.17898 4.37827 4.47665 4.62019 4.77977 4.80550 4.92323 4.97902 5.02541 5.12338 5.76534 6.08795 6.15260 6.49793 7.28955 7.73769 8.67583 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.035320 B = 0.004020 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.572413 B = 6963.570867 C = 7188.742792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.023 4.023 3 Si 1.118 2.882 4 H -0.274 1.274 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.604 4.604 8 H 0.041 0.959 9 C 0.088 3.912 10 C 0.221 3.779 11 N -0.336 5.336 12 N -0.325 5.325 13 C 0.181 3.819 14 C 0.013 3.987 15 H 0.149 0.851 16 C -0.118 4.118 17 C -0.552 4.552 18 S 2.411 3.589 19 O -0.973 6.973 20 O -0.969 6.969 21 C -0.602 4.602 22 N -0.573 5.573 23 H 0.438 0.562 24 H 0.261 0.739 25 H 0.036 0.964 26 H 0.029 0.971 27 H 0.089 0.911 28 H 0.121 0.879 29 H 0.165 0.835 30 H 0.172 0.828 31 H 0.164 0.836 32 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.842 -19.751 5.801 21.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.222 4.222 3 Si 0.940 3.060 4 H -0.200 1.200 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.642 4.642 8 H 0.060 0.940 9 C 0.049 3.951 10 C -0.049 4.049 11 N -0.176 5.176 12 N -0.165 5.165 13 C -0.089 4.089 14 C -0.008 4.008 15 H 0.167 0.833 16 C -0.157 4.157 17 C -0.685 4.685 18 S 2.598 3.402 19 O -0.971 6.971 20 O -0.966 6.966 21 C -0.731 4.731 22 N -0.188 5.188 23 H 0.281 0.719 24 H 0.071 0.929 25 H 0.054 0.946 26 H 0.046 0.954 27 H 0.107 0.893 28 H 0.139 0.861 29 H 0.183 0.817 30 H 0.190 0.810 31 H 0.182 0.818 32 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 6.495 -18.241 5.425 20.108 hybrid contribution -1.059 -1.175 0.596 1.690 sum 5.436 -19.415 6.021 21.042 Atomic orbital electron populations 1.70906 1.07517 1.30215 1.47877 1.27208 0.96507 1.06052 0.92403 0.82891 0.73978 0.71332 0.77818 1.19998 1.20137 1.20235 1.22039 0.94243 0.91838 1.56097 0.94009 1.17748 0.91452 0.88252 0.97644 1.25175 0.99169 0.92098 0.88478 1.74210 1.07015 1.11601 1.24749 1.74093 1.23959 1.05020 1.13383 1.24825 0.89948 0.97720 0.96450 1.20228 1.04778 0.86763 0.89059 0.83307 1.22367 1.01340 0.89409 1.02629 1.30495 1.14714 1.07813 1.15456 1.08345 0.73738 0.78735 0.79418 1.93592 1.38329 1.85968 1.79162 1.93584 1.56131 1.78326 1.68566 1.30765 1.14012 1.24562 1.03768 1.43899 1.28245 1.20179 1.26431 0.71925 0.92922 0.94635 0.95354 0.89252 0.86051 0.81693 0.80988 0.81791 0.84991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.21 13.65 21.45 0.29 -53.92 16 2 C -0.02 -1.27 5.46 84.65 0.46 -0.80 16 3 Si 1.12 49.83 29.90 68.60 2.05 51.88 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 6 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 7 C -0.60 -33.80 9.08 25.60 0.23 -33.57 16 8 H 0.04 2.44 7.74 -2.91 -0.02 2.42 16 9 C 0.09 4.34 4.91 29.10 0.14 4.48 16 10 C 0.22 9.51 7.50 137.98 1.04 10.55 16 11 N -0.34 -15.67 12.19 -50.15 -0.61 -16.28 16 12 N -0.32 -12.52 12.21 -50.16 -0.61 -13.14 16 13 C 0.18 5.12 7.00 137.98 0.97 6.09 16 14 C 0.01 0.20 3.09 -10.85 -0.03 0.17 16 15 H 0.15 1.63 8.14 -2.39 -0.02 1.61 16 16 C -0.12 -1.16 5.78 31.59 0.18 -0.98 16 17 C -0.55 -2.77 7.31 72.68 0.53 -2.24 16 18 S 2.41 30.09 6.10 -56.49 -0.34 29.75 16 19 O -0.97 -20.21 18.14 -127.49 -2.31 -22.53 16 20 O -0.97 -18.95 18.15 -127.49 -2.31 -21.26 16 21 C -0.60 -7.46 6.72 72.38 0.49 -6.98 16 22 N -0.57 -17.76 5.86 -177.96 -1.04 -18.80 16 23 H 0.44 10.22 7.78 -92.71 -0.72 9.50 16 24 H 0.26 15.04 7.22 -92.71 -0.67 14.37 16 25 H 0.04 1.66 8.01 -2.38 -0.02 1.64 16 26 H 0.03 1.48 8.01 -2.39 -0.02 1.46 16 27 H 0.09 0.92 8.11 -2.39 -0.02 0.90 16 28 H 0.12 1.07 8.14 -2.38 -0.02 1.05 16 29 H 0.17 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.17 0.05 8.14 -2.39 -0.02 0.03 16 31 H 0.16 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.13 1.69 6.47 -2.38 -0.02 1.68 16 Total: -1.00 -83.97 288.41 -0.35 -84.32 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: 0.54 Total: 3.27 kcal Atomic # 6 Polarization: -27.29 SS G_CDS: 4.01 Total: -23.28 kcal Atomic # 7 Polarization: -100.17 SS G_CDS: -1.97 Total: -102.14 kcal Atomic # 8 Polarization: -39.16 SS G_CDS: -4.63 Total: -43.79 kcal Atomic # 14 Polarization: 49.83 SS G_CDS: 2.05 Total: 51.88 kcal Atomic # 16 Polarization: 30.09 SS G_CDS: -0.34 Total: 29.75 kcal Total: -83.97 -0.35 -84.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260042193.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.235 kcal (2) G-P(sol) polarization free energy of solvation -83.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds