Wall clock time and date at job start Mon Mar 30 2020 05:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86794 * 120.00055 * 2 1 4 4 H 1.48502 * 109.47428 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47134 * 299.99373 * 3 2 1 6 6 H 1.48502 * 109.47625 * 59.99752 * 3 2 1 7 7 C 1.37876 * 120.00123 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00328 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00116 * 0.02562 * 7 2 1 10 10 C 1.50693 * 109.47341 * 179.97438 * 9 7 2 11 11 N 1.30520 * 126.34956 * 305.00003 * 10 9 7 12 12 N 1.28600 * 109.67545 * 179.72894 * 11 10 9 13 13 C 1.30520 * 109.67168 * 0.44814 * 12 11 10 14 14 C 1.50699 * 126.34704 * 179.82089 * 13 12 11 15 15 H 1.08999 * 110.00763 * 26.07316 * 14 13 12 16 16 C 1.53878 * 110.02705 * 147.49577 * 14 13 12 17 17 C 1.54159 * 108.70185 * 166.47380 * 16 14 13 18 18 S 1.82920 * 105.08823 * 332.09231 * 17 16 14 19 19 O 1.42103 * 109.35097 * 115.52458 * 18 17 16 20 20 O 1.42104 * 109.35329 * 248.59000 * 18 17 16 21 21 C 1.55045 * 110.02946 * 264.69223 * 14 13 12 22 22 N 1.35493 * 126.34749 * 125.00008 * 10 9 7 23 23 H 0.97003 * 126.98080 * 0.02562 * 22 10 9 24 24 H 0.97003 * 119.99991 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.47184 * 59.99245 * 9 7 2 26 26 H 1.09001 * 109.46717 * 299.99883 * 9 7 2 27 27 H 1.09005 * 109.64521 * 46.62339 * 16 14 13 28 28 H 1.08996 * 109.64754 * 286.32728 * 16 14 13 29 29 H 1.09010 * 110.31795 * 213.18865 * 17 16 14 30 30 H 1.08996 * 110.32170 * 90.99780 * 17 16 14 31 31 H 1.08999 * 110.79230 * 80.00109 * 21 14 13 32 32 H 1.08997 * 110.78846 * 316.54121 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2303 -3.6445 0.0005 11 7 3.1913 -3.8407 -0.8606 12 7 3.8346 -4.9116 -0.5550 13 6 3.3072 -5.4523 0.5094 14 6 3.7640 -6.7179 1.1879 15 1 4.8224 -6.8866 0.9891 16 6 3.5208 -6.6203 2.7042 17 6 3.6713 -8.0252 3.3205 18 16 3.2239 -9.1845 1.9782 19 8 4.3609 -9.9622 1.6293 20 8 1.9983 -9.8275 2.3002 21 6 2.9299 -7.9228 0.6816 22 7 2.2764 -4.6617 0.8945 23 1 1.6902 -4.7967 1.6555 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8903 27 1 2.5148 -6.2442 2.8905 28 1 4.2508 -5.9445 3.1497 29 1 2.9917 -8.1431 4.1646 30 1 4.7011 -8.1916 3.6367 31 1 3.2967 -8.2685 -0.2849 32 1 1.8724 -7.6650 0.6255 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260042195.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:15 Heat of formation + Delta-G solvation = -5.437929 kcal Electronic energy + Delta-G solvation = -18305.834437 eV Core-core repulsion = 15201.818333 eV Total energy + Delta-G solvation = -3104.016104 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.64268 -37.42220 -37.19685 -36.30894 -33.76300 -32.99800 -31.42640 -30.10139 -27.68655 -25.64845 -23.81248 -22.67443 -20.98227 -20.35352 -19.18119 -17.72559 -17.11063 -16.72820 -16.42100 -15.98523 -15.34331 -14.95177 -14.76507 -14.48989 -14.31103 -13.07671 -12.91618 -12.79263 -12.48485 -12.43684 -12.32249 -12.30127 -11.86592 -11.51196 -11.23229 -11.03046 -10.86160 -10.82727 -10.72664 -10.32328 -10.10746 -9.84029 -9.52141 -8.64981 -8.33684 -6.21555 -4.24337 -0.34110 2.05316 2.31512 3.11823 3.20570 3.23919 3.32137 3.38280 3.47014 3.61119 3.88653 4.04157 4.21894 4.34911 4.37056 4.45435 4.70457 5.02966 5.14119 5.16178 5.24119 5.41626 5.49176 5.54815 5.86896 6.05468 6.61906 7.11124 7.21390 7.53211 7.77114 8.04283 8.79898 9.32984 9.40986 10.89358 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.045757 B = 0.003736 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.778350 B = 7492.560457 C = 7576.297180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.060 3.940 3 Si 0.903 3.097 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.284 1.284 7 C -0.510 4.510 8 H 0.065 0.935 9 C 0.094 3.906 10 C 0.241 3.759 11 N -0.300 5.300 12 N -0.286 5.286 13 C 0.144 3.856 14 C 0.010 3.990 15 H 0.126 0.874 16 C -0.116 4.116 17 C -0.590 4.590 18 S 2.392 3.608 19 O -0.933 6.933 20 O -0.937 6.937 21 C -0.583 4.583 22 N -0.587 5.587 23 H 0.421 0.579 24 H 0.264 0.736 25 H 0.056 0.944 26 H 0.038 0.962 27 H 0.083 0.917 28 H 0.103 0.897 29 H 0.142 0.858 30 H 0.142 0.858 31 H 0.148 0.852 32 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.296 -15.563 8.442 18.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.142 4.142 3 Si 0.730 3.270 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.210 1.210 7 C -0.549 4.549 8 H 0.084 0.916 9 C 0.055 3.945 10 C -0.026 4.026 11 N -0.140 5.140 12 N -0.127 5.127 13 C -0.125 4.125 14 C -0.012 4.012 15 H 0.144 0.856 16 C -0.155 4.155 17 C -0.719 4.719 18 S 2.575 3.425 19 O -0.930 6.930 20 O -0.934 6.934 21 C -0.713 4.713 22 N -0.201 5.201 23 H 0.260 0.740 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.056 0.944 27 H 0.101 0.899 28 H 0.122 0.878 29 H 0.160 0.840 30 H 0.160 0.840 31 H 0.166 0.834 32 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 5.111 -16.209 7.085 18.414 hybrid contribution -0.761 1.576 1.515 2.315 sum 4.350 -14.633 8.600 17.522 Atomic orbital electron populations 1.69938 1.06064 1.27224 1.50144 1.24967 0.94942 0.99516 0.94755 0.86345 0.80191 0.82767 0.77666 1.19501 1.20686 1.20970 1.20969 0.93518 0.88920 1.51525 0.91634 1.17977 0.90571 0.86492 0.99482 1.26251 0.98854 0.91171 0.86334 1.74344 1.06320 1.09941 1.23411 1.74175 1.22981 1.04841 1.10729 1.23617 0.92725 0.97363 0.98815 1.20050 1.01378 0.87499 0.92286 0.85579 1.22021 1.05203 0.95506 0.92783 1.30489 1.13087 1.11102 1.17226 1.09018 0.75706 0.78054 0.79713 1.93637 1.51036 1.66187 1.82127 1.93628 1.44578 1.72512 1.82682 1.30841 1.09690 1.13091 1.17651 1.44060 1.27828 1.21436 1.26752 0.73971 0.92604 0.92633 0.94409 0.89852 0.87796 0.83978 0.84008 0.83354 0.84316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.87 13.29 55.43 0.74 -24.13 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.51 -13.68 9.07 -34.44 -0.31 -13.99 16 8 H 0.07 1.81 7.74 -52.49 -0.41 1.41 16 9 C 0.09 2.22 5.60 -29.04 -0.16 2.06 16 10 C 0.24 5.05 7.50 -154.99 -1.16 3.88 16 11 N -0.30 -6.86 12.19 32.79 0.40 -6.46 16 12 N -0.29 -5.65 12.21 32.80 0.40 -5.25 16 13 C 0.14 2.15 7.06 -154.98 -1.09 1.05 16 14 C 0.01 0.09 3.10 -90.23 -0.28 -0.19 16 15 H 0.13 1.02 8.14 -51.93 -0.42 0.60 16 16 C -0.12 -0.75 5.66 -25.67 -0.15 -0.89 16 17 C -0.59 -2.83 7.26 37.76 0.27 -2.56 16 18 S 2.39 18.06 6.10 -107.50 -0.66 17.40 16 19 O -0.93 -10.27 18.15 -57.73 -1.05 -11.32 16 20 O -0.94 -10.40 18.15 -57.73 -1.05 -11.45 16 21 C -0.58 -4.56 6.66 38.24 0.25 -4.30 16 22 N -0.59 -9.05 5.95 -7.60 -0.05 -9.10 16 23 H 0.42 4.80 7.91 -40.82 -0.32 4.47 16 24 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 25 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 26 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 27 H 0.08 0.46 6.96 -51.93 -0.36 0.09 16 28 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.14 0.48 8.14 -51.92 -0.42 0.05 16 30 H 0.14 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.15 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.14 1.01 8.10 -51.93 -0.42 0.59 16 LS Contribution 290.27 15.07 4.37 4.37 Total: -1.00 -36.99 290.27 -8.24 -45.22 By element: Atomic # 1 Polarization: 1.80 SS G_CDS: -3.60 Total: -1.81 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: -2.73 Total: -13.40 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: 1.49 Total: -44.94 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: -2.10 Total: -22.77 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: 18.06 SS G_CDS: -0.66 Total: 17.40 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -36.99 -8.24 -45.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260042195.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.786 kcal (2) G-P(sol) polarization free energy of solvation -36.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds