Wall clock time and date at job start Mon Mar 30 2020 05:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86794 * 120.00055 * 2 1 4 4 H 1.48502 * 109.47428 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47134 * 299.99373 * 3 2 1 6 6 H 1.48502 * 109.47625 * 59.99752 * 3 2 1 7 7 C 1.37876 * 120.00123 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00328 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00116 * 0.02562 * 7 2 1 10 10 C 1.50693 * 109.47341 * 179.97438 * 9 7 2 11 11 N 1.30520 * 126.34956 * 305.00003 * 10 9 7 12 12 N 1.28600 * 109.67545 * 179.72894 * 11 10 9 13 13 C 1.30520 * 109.67168 * 0.44814 * 12 11 10 14 14 C 1.50699 * 126.34704 * 179.82089 * 13 12 11 15 15 H 1.08999 * 110.00763 * 26.07316 * 14 13 12 16 16 C 1.53878 * 110.02705 * 147.49577 * 14 13 12 17 17 C 1.54159 * 108.70185 * 166.47380 * 16 14 13 18 18 S 1.82920 * 105.08823 * 332.09231 * 17 16 14 19 19 O 1.42103 * 109.35097 * 115.52458 * 18 17 16 20 20 O 1.42104 * 109.35329 * 248.59000 * 18 17 16 21 21 C 1.55045 * 110.02946 * 264.69223 * 14 13 12 22 22 N 1.35493 * 126.34749 * 125.00008 * 10 9 7 23 23 H 0.97003 * 126.98080 * 0.02562 * 22 10 9 24 24 H 0.97003 * 119.99991 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.47184 * 59.99245 * 9 7 2 26 26 H 1.09001 * 109.46717 * 299.99883 * 9 7 2 27 27 H 1.09005 * 109.64521 * 46.62339 * 16 14 13 28 28 H 1.08996 * 109.64754 * 286.32728 * 16 14 13 29 29 H 1.09010 * 110.31795 * 213.18865 * 17 16 14 30 30 H 1.08996 * 110.32170 * 90.99780 * 17 16 14 31 31 H 1.08999 * 110.79230 * 80.00109 * 21 14 13 32 32 H 1.08997 * 110.78846 * 316.54121 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2303 -3.6445 0.0005 11 7 3.1913 -3.8407 -0.8606 12 7 3.8346 -4.9116 -0.5550 13 6 3.3072 -5.4523 0.5094 14 6 3.7640 -6.7179 1.1879 15 1 4.8224 -6.8866 0.9891 16 6 3.5208 -6.6203 2.7042 17 6 3.6713 -8.0252 3.3205 18 16 3.2239 -9.1845 1.9782 19 8 4.3609 -9.9622 1.6293 20 8 1.9983 -9.8275 2.3002 21 6 2.9299 -7.9228 0.6816 22 7 2.2764 -4.6617 0.8945 23 1 1.6902 -4.7967 1.6555 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8903 27 1 2.5148 -6.2442 2.8905 28 1 4.2508 -5.9445 3.1497 29 1 2.9917 -8.1431 4.1646 30 1 4.7011 -8.1916 3.6367 31 1 3.2967 -8.2685 -0.2849 32 1 1.8724 -7.6650 0.6255 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260042195.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:15 Heat of formation + Delta-G solvation = -34.052662 kcal Electronic energy + Delta-G solvation = -18307.075265 eV Core-core repulsion = 15201.818333 eV Total energy + Delta-G solvation = -3105.256932 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -44.08165 -38.16208 -37.94078 -37.04790 -35.62744 -34.51735 -32.79249 -31.10288 -29.21274 -26.48082 -25.63573 -23.79242 -22.21820 -21.59004 -19.81495 -18.92951 -18.58696 -17.71469 -17.49345 -16.86791 -16.65088 -16.53716 -15.72332 -15.30944 -15.04991 -14.65484 -14.29867 -13.92027 -13.48494 -13.33174 -13.25268 -13.12826 -13.01246 -12.81368 -12.68649 -12.49539 -12.05622 -12.00709 -11.91359 -11.77394 -11.57558 -11.32799 -11.21105 -10.65436 -9.91795 -8.26684 -6.35952 -0.94932 0.87030 1.40402 1.43507 1.53663 1.57054 1.87361 1.92128 2.42156 2.63369 2.94869 3.08387 3.14033 3.35429 3.55095 3.73417 3.91506 3.95773 4.09616 4.31794 4.41000 4.63604 4.70490 4.84681 4.93666 4.95754 5.09891 5.23466 5.33690 5.68916 6.02120 6.32710 6.71458 7.32307 7.85121 8.84210 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.045757 B = 0.003736 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.778350 B = 7492.560457 C = 7576.297180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.016 3.984 3 Si 0.963 3.037 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.271 1.271 7 C -0.527 4.527 8 H 0.050 0.950 9 C 0.104 3.896 10 C 0.221 3.779 11 N -0.342 5.342 12 N -0.332 5.332 13 C 0.184 3.816 14 C 0.003 3.997 15 H 0.142 0.858 16 C -0.119 4.119 17 C -0.558 4.558 18 S 2.410 3.590 19 O -0.970 6.970 20 O -0.974 6.974 21 C -0.585 4.585 22 N -0.568 5.568 23 H 0.441 0.559 24 H 0.269 0.731 25 H 0.030 0.970 26 H 0.043 0.957 27 H 0.097 0.903 28 H 0.117 0.883 29 H 0.169 0.831 30 H 0.166 0.834 31 H 0.149 0.851 32 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.977 -16.015 10.606 19.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.183 4.183 3 Si 0.788 3.212 4 H -0.198 1.198 5 H -0.203 1.203 6 H -0.196 1.196 7 C -0.566 4.566 8 H 0.068 0.932 9 C 0.065 3.935 10 C -0.049 4.049 11 N -0.181 5.181 12 N -0.171 5.171 13 C -0.087 4.087 14 C -0.019 4.019 15 H 0.159 0.841 16 C -0.158 4.158 17 C -0.690 4.690 18 S 2.597 3.403 19 O -0.967 6.967 20 O -0.971 6.971 21 C -0.714 4.714 22 N -0.183 5.183 23 H 0.285 0.715 24 H 0.078 0.922 25 H 0.048 0.952 26 H 0.061 0.939 27 H 0.115 0.885 28 H 0.135 0.865 29 H 0.186 0.814 30 H 0.184 0.816 31 H 0.167 0.833 32 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 5.773 -16.698 9.239 19.938 hybrid contribution -0.943 1.629 0.885 2.080 sum 4.831 -15.069 10.124 18.786 Atomic orbital electron populations 1.70012 1.07181 1.28219 1.50746 1.25708 0.95742 1.02572 0.94325 0.85417 0.78646 0.79011 0.78091 1.19809 1.20325 1.19642 1.21171 0.92998 0.90727 1.51666 0.93211 1.17616 0.90679 0.86797 0.98434 1.25518 0.98945 0.92283 0.88144 1.74218 1.07319 1.11667 1.24943 1.74089 1.24470 1.05119 1.13470 1.24548 0.90259 0.97311 0.96587 1.20436 1.02408 0.84853 0.94180 0.84066 1.22113 1.06622 0.96802 0.90250 1.30317 1.15273 1.07755 1.15702 1.08353 0.74115 0.77949 0.79882 1.93589 1.51901 1.68067 1.83152 1.93581 1.46204 1.74093 1.83237 1.30849 1.09859 1.12454 1.18283 1.43847 1.28078 1.19939 1.26467 0.71541 0.92235 0.95173 0.93881 0.88453 0.86461 0.81354 0.81591 0.83283 0.83717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.51 13.29 21.45 0.28 -51.23 16 2 C 0.02 0.86 5.46 84.65 0.46 1.32 16 3 Si 0.96 42.95 29.54 68.60 2.03 44.97 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 5 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 6 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 7 C -0.53 -28.74 9.07 25.60 0.23 -28.51 16 8 H 0.05 2.82 7.74 -2.91 -0.02 2.79 16 9 C 0.10 5.04 5.60 29.10 0.16 5.20 16 10 C 0.22 9.32 7.50 137.98 1.04 10.36 16 11 N -0.34 -15.92 12.19 -50.16 -0.61 -16.53 16 12 N -0.33 -13.05 12.21 -50.15 -0.61 -13.66 16 13 C 0.18 5.19 7.06 137.98 0.97 6.16 16 14 C 0.00 0.05 3.10 -10.54 -0.03 0.02 16 15 H 0.14 1.87 8.14 -2.39 -0.02 1.85 16 16 C -0.12 -1.00 5.66 31.28 0.18 -0.82 16 17 C -0.56 -2.71 7.26 72.37 0.53 -2.19 16 18 S 2.41 30.92 6.10 -56.49 -0.34 30.57 16 19 O -0.97 -19.86 18.15 -127.47 -2.31 -22.17 16 20 O -0.97 -20.03 18.15 -127.47 -2.31 -22.34 16 21 C -0.58 -7.95 6.66 72.68 0.48 -7.47 16 22 N -0.57 -16.71 5.95 -177.96 -1.06 -17.77 16 23 H 0.44 8.98 7.91 -92.71 -0.73 8.24 16 24 H 0.27 14.08 8.31 -92.71 -0.77 13.31 16 25 H 0.03 1.59 8.14 -2.38 -0.02 1.57 16 26 H 0.04 1.99 8.14 -2.39 -0.02 1.98 16 27 H 0.10 0.60 6.96 -2.38 -0.02 0.58 16 28 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.17 0.17 8.14 -2.38 -0.02 0.15 16 30 H 0.17 0.21 8.14 -2.39 -0.02 0.19 16 31 H 0.15 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.14 1.82 8.10 -2.39 -0.02 1.80 16 Total: -1.00 -82.02 290.27 -0.50 -82.52 By element: Atomic # 1 Polarization: 1.14 SS G_CDS: 0.42 Total: 1.56 kcal Atomic # 6 Polarization: -19.94 SS G_CDS: 4.02 Total: -15.92 kcal Atomic # 7 Polarization: -97.19 SS G_CDS: -2.00 Total: -99.19 kcal Atomic # 8 Polarization: -39.89 SS G_CDS: -4.63 Total: -44.52 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.97 kcal Atomic # 16 Polarization: 30.92 SS G_CDS: -0.34 Total: 30.57 kcal Total: -82.02 -0.50 -82.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260042195.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.467 kcal (2) G-P(sol) polarization free energy of solvation -82.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds