Wall clock time and date at job start Mon Mar 30 2020 04:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.33331 * 126.46065 * 2 1 4 4 C 1.30802 * 109.25659 * 180.02562 * 3 2 1 5 5 C 1.50695 * 125.15525 * 179.97438 * 4 3 2 6 6 H 1.08995 * 109.64149 * 180.40699 * 5 4 3 7 7 C 1.53879 * 109.64660 * 300.70475 * 5 4 3 8 8 C 1.55055 * 106.62285 * 167.03352 * 7 5 4 9 9 S 1.83288 * 102.56411 * 317.56307 * 8 7 5 10 10 O 1.42096 * 109.35385 * 269.81393 * 9 8 7 11 11 O 1.42098 * 109.47285 * 136.64795 * 9 8 7 12 12 C 1.54171 * 109.64472 * 59.97521 * 5 4 3 13 13 O 1.34014 * 109.68854 * 359.73196 * 4 3 2 14 14 C 1.35476 * 107.71635 * 0.43223 * 13 4 3 15 15 C 1.39853 * 126.87487 * 179.84429 * 14 13 4 16 16 H 1.07994 * 120.00388 * 185.81982 * 15 14 13 17 17 C 1.40174 * 119.99550 * 5.81624 * 15 14 13 18 18 N 1.30793 * 120.00151 * 6.42396 * 17 15 14 19 19 Si 1.86799 * 119.99962 * 186.42012 * 17 15 14 20 20 H 1.48501 * 109.47046 * 84.99086 * 19 17 15 21 21 H 1.48499 * 109.47138 * 324.99681 * 19 17 15 22 22 H 1.48493 * 109.47183 * 204.99264 * 19 17 15 23 23 H 1.08998 * 109.47347 * 269.97768 * 1 2 3 24 24 H 1.09004 * 109.47271 * 29.97940 * 1 2 3 25 25 H 1.08999 * 109.47349 * 149.97607 * 1 2 3 26 26 H 1.09002 * 110.02509 * 286.32094 * 7 5 4 27 27 H 1.09000 * 110.02878 * 47.73902 * 7 5 4 28 28 H 1.08999 * 110.78540 * 199.29707 * 8 7 5 29 29 H 1.09000 * 110.79005 * 75.83320 * 8 7 5 30 30 H 1.08997 * 110.32065 * 331.14138 * 12 5 4 31 31 H 1.09003 * 110.31336 * 93.23583 * 12 5 4 32 32 H 0.97000 * 120.00087 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2993 1.0723 0.0000 4 6 3.5488 0.6855 -0.0006 5 6 4.7421 1.6058 -0.0013 6 1 5.6591 1.0167 -0.0089 7 6 4.6992 2.5075 -1.2475 8 6 5.7437 3.6304 -1.0186 9 16 5.4683 4.0792 0.7371 10 8 4.4975 5.1142 0.8118 11 8 6.7215 4.2360 1.3881 12 6 4.7094 2.4978 1.2557 13 8 3.6069 -0.6534 0.0050 14 6 2.3355 -1.1213 -0.0006 15 6 1.9342 -2.4610 -0.0008 16 1 0.8885 -2.7115 -0.1003 17 6 2.8895 -3.4786 0.1283 18 7 4.1380 -3.1763 0.3744 19 14 2.3795 -5.2667 -0.0513 20 1 2.3832 -5.6405 -1.4885 21 1 1.0147 -5.4503 0.5044 22 1 3.3351 -6.1305 0.6873 23 1 -0.3634 -0.0004 1.0276 24 1 -0.3634 0.8902 -0.5135 25 1 -0.3634 -0.8897 -0.5142 26 1 4.9598 1.9305 -2.1348 27 1 3.7051 2.9398 -1.3614 28 1 5.5463 4.4810 -1.6709 29 1 6.7556 3.2537 -1.1675 30 1 3.6810 2.6594 1.5786 31 1 5.2903 2.0426 2.0580 32 1 4.7990 -3.8805 0.4641 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260042254.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:55 Heat of formation + Delta-G solvation = -77.220263 kcal Electronic energy + Delta-G solvation = -18797.436420 eV Core-core repulsion = 15658.014849 eV Total energy + Delta-G solvation = -3139.421571 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.071 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.15017 -36.91353 -36.48245 -35.83168 -33.94496 -33.25910 -30.67924 -29.43324 -27.49159 -25.86784 -23.70063 -21.85649 -19.78408 -19.44118 -18.70505 -17.53955 -16.59648 -16.47473 -15.52355 -15.36528 -14.93151 -14.70554 -13.95481 -13.89731 -13.63325 -13.07552 -12.34313 -12.16625 -12.11626 -12.02482 -11.94026 -11.86610 -11.83732 -11.54396 -11.48232 -11.01318 -10.87588 -10.73719 -10.58417 -10.38084 -10.17574 -9.71594 -9.33320 -8.92150 -7.47631 -7.10424 -4.66273 0.18488 2.60914 2.72721 2.90278 2.94213 3.25671 3.68507 3.69803 3.97629 4.07331 4.36974 4.57586 4.89889 4.91714 4.96283 5.07544 5.22893 5.48916 5.63228 5.75900 5.87218 6.21064 6.27223 6.29881 6.60601 6.64847 6.75492 6.85284 7.17165 7.50427 7.94396 8.11730 8.35414 8.42446 9.53999 9.88117 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.032270 B = 0.004981 C = 0.004575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.476911 B = 5619.956056 C = 6118.331754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 C -0.207 4.207 3 N -0.439 5.439 4 C 0.018 3.982 5 C 0.048 3.952 6 H 0.100 0.900 7 C -0.110 4.110 8 C -0.586 4.586 9 S 2.386 3.614 10 O -0.939 6.939 11 O -0.948 6.948 12 C -0.576 4.576 13 O -0.187 6.187 14 C 0.186 3.814 15 C -0.428 4.428 16 H 0.109 0.891 17 C 0.066 3.934 18 N -0.769 5.769 19 Si 0.926 3.074 20 H -0.264 1.264 21 H -0.257 1.257 22 H -0.274 1.274 23 H 0.039 0.961 24 H 0.044 0.956 25 H 0.051 0.949 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.136 0.864 29 H 0.136 0.864 30 H 0.146 0.854 31 H 0.137 0.863 32 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.996 4.446 -2.302 5.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.334 4.334 3 N -0.168 5.168 4 C -0.182 4.182 5 C 0.028 3.972 6 H 0.118 0.882 7 C -0.149 4.149 8 C -0.716 4.716 9 S 2.570 3.430 10 O -0.937 6.937 11 O -0.946 6.946 12 C -0.707 4.707 13 O -0.075 6.075 14 C 0.131 3.869 15 C -0.457 4.457 16 H 0.127 0.873 17 C -0.156 4.156 18 N -0.394 5.394 19 Si 0.749 3.251 20 H -0.189 1.189 21 H -0.181 1.181 22 H -0.199 1.199 23 H 0.057 0.943 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.115 0.885 27 H 0.115 0.885 28 H 0.154 0.846 29 H 0.154 0.846 30 H 0.164 0.836 31 H 0.155 0.845 32 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.352 5.885 -1.732 6.991 hybrid contribution -0.044 -2.367 -0.430 2.406 sum 3.308 3.519 -2.162 5.291 Atomic orbital electron populations 1.19417 0.89233 1.00031 0.99514 1.21290 0.95616 0.87579 1.28925 1.69120 1.00574 1.33234 1.13866 1.23786 0.92801 0.80993 1.20655 1.19165 0.95039 0.92628 0.90397 0.88165 1.22303 0.98704 0.94493 0.99384 1.30597 1.08254 1.08906 1.23833 1.09066 0.75856 0.78423 0.79613 1.93603 1.61344 1.52968 1.85739 1.93582 1.41966 1.86074 1.72932 1.30620 1.15000 1.18196 1.06883 1.84685 1.29825 1.20025 1.72964 1.20342 0.79479 0.94314 0.92785 1.18781 0.95822 0.86670 1.44452 0.87302 1.26198 0.94378 1.02874 0.92169 1.69752 1.02455 1.36600 1.30595 0.86008 0.79904 0.79561 0.79618 1.18874 1.18114 1.19893 0.94260 0.93682 0.92957 0.88467 0.88472 0.84616 0.84599 0.83579 0.84451 0.90111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.50 10.24 36.00 0.37 -0.14 16 2 C -0.21 -5.16 7.27 -81.51 -0.59 -5.75 16 3 N -0.44 -10.59 10.90 -6.32 -0.07 -10.66 16 4 C 0.02 0.40 6.76 -12.72 -0.09 0.32 16 5 C 0.05 0.81 3.08 -90.70 -0.28 0.53 16 6 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 7 C -0.11 -1.50 5.79 -25.19 -0.15 -1.65 16 8 C -0.59 -6.10 7.31 38.24 0.28 -5.82 16 9 S 2.39 31.22 6.10 -107.50 -0.66 30.56 16 10 O -0.94 -15.45 18.14 -57.73 -1.05 -16.50 16 11 O -0.95 -14.72 18.15 -57.73 -1.05 -15.77 16 12 C -0.58 -8.47 6.74 37.77 0.25 -8.22 16 13 O -0.19 -4.95 9.24 3.12 0.03 -4.92 16 14 C 0.19 4.94 6.80 -38.54 -0.26 4.68 16 15 C -0.43 -10.75 9.09 -38.25 -0.35 -11.10 16 16 H 0.11 2.52 7.31 -52.49 -0.38 2.14 16 17 C 0.07 1.57 5.49 -17.27 -0.09 1.47 16 18 N -0.77 -19.19 12.12 55.56 0.67 -18.52 16 19 Si 0.93 17.28 29.57 -169.99 -5.03 12.26 16 20 H -0.26 -4.86 7.11 56.52 0.40 -4.45 16 21 H -0.26 -4.68 7.11 56.52 0.40 -4.28 16 22 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 23 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.05 1.01 7.55 -51.93 -0.39 0.61 16 26 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.10 1.43 8.02 -51.93 -0.42 1.01 16 28 H 0.14 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.14 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.15 2.38 7.70 -51.93 -0.40 1.98 16 31 H 0.14 1.80 8.14 -51.93 -0.42 1.37 16 32 H 0.29 6.44 8.30 -40.82 -0.34 6.10 16 LS Contribution 289.97 15.07 4.37 4.37 Total: -1.00 -33.47 289.97 -7.37 -40.84 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -3.69 Total: 4.02 kcal Atomic # 6 Polarization: -24.77 SS G_CDS: -0.91 Total: -25.68 kcal Atomic # 7 Polarization: -29.78 SS G_CDS: 0.60 Total: -29.18 kcal Atomic # 8 Polarization: -35.12 SS G_CDS: -2.07 Total: -37.19 kcal Atomic # 14 Polarization: 17.28 SS G_CDS: -5.03 Total: 12.26 kcal Atomic # 16 Polarization: 31.22 SS G_CDS: -0.66 Total: 30.56 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -33.47 -7.37 -40.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260042254.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.384 kcal (2) G-P(sol) polarization free energy of solvation -33.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds