Wall clock time and date at job start Mon Mar 30 2020 04:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.33331 * 126.46065 * 2 1 4 4 C 1.30802 * 109.25659 * 180.02562 * 3 2 1 5 5 C 1.50695 * 125.15525 * 179.97438 * 4 3 2 6 6 H 1.08995 * 109.64149 * 180.40699 * 5 4 3 7 7 C 1.53879 * 109.64660 * 300.70475 * 5 4 3 8 8 C 1.55055 * 106.62285 * 167.03352 * 7 5 4 9 9 S 1.83288 * 102.56411 * 317.56307 * 8 7 5 10 10 O 1.42096 * 109.35385 * 269.81393 * 9 8 7 11 11 O 1.42098 * 109.47285 * 136.64795 * 9 8 7 12 12 C 1.54171 * 109.64472 * 59.97521 * 5 4 3 13 13 O 1.34014 * 109.68854 * 359.73196 * 4 3 2 14 14 C 1.35476 * 107.71635 * 0.43223 * 13 4 3 15 15 C 1.39853 * 126.87487 * 179.84429 * 14 13 4 16 16 H 1.07994 * 120.00388 * 185.81982 * 15 14 13 17 17 C 1.40174 * 119.99550 * 5.81624 * 15 14 13 18 18 N 1.30793 * 120.00151 * 6.42396 * 17 15 14 19 19 Si 1.86799 * 119.99962 * 186.42012 * 17 15 14 20 20 H 1.48501 * 109.47046 * 84.99086 * 19 17 15 21 21 H 1.48499 * 109.47138 * 324.99681 * 19 17 15 22 22 H 1.48493 * 109.47183 * 204.99264 * 19 17 15 23 23 H 1.08998 * 109.47347 * 269.97768 * 1 2 3 24 24 H 1.09004 * 109.47271 * 29.97940 * 1 2 3 25 25 H 1.08999 * 109.47349 * 149.97607 * 1 2 3 26 26 H 1.09002 * 110.02509 * 286.32094 * 7 5 4 27 27 H 1.09000 * 110.02878 * 47.73902 * 7 5 4 28 28 H 1.08999 * 110.78540 * 199.29707 * 8 7 5 29 29 H 1.09000 * 110.79005 * 75.83320 * 8 7 5 30 30 H 1.08997 * 110.32065 * 331.14138 * 12 5 4 31 31 H 1.09003 * 110.31336 * 93.23583 * 12 5 4 32 32 H 0.97000 * 120.00087 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2993 1.0723 0.0000 4 6 3.5488 0.6855 -0.0006 5 6 4.7421 1.6058 -0.0013 6 1 5.6591 1.0167 -0.0089 7 6 4.6992 2.5075 -1.2475 8 6 5.7437 3.6304 -1.0186 9 16 5.4683 4.0792 0.7371 10 8 4.4975 5.1142 0.8118 11 8 6.7215 4.2360 1.3881 12 6 4.7094 2.4978 1.2557 13 8 3.6069 -0.6534 0.0050 14 6 2.3355 -1.1213 -0.0006 15 6 1.9342 -2.4610 -0.0008 16 1 0.8885 -2.7115 -0.1003 17 6 2.8895 -3.4786 0.1283 18 7 4.1380 -3.1763 0.3744 19 14 2.3795 -5.2667 -0.0513 20 1 2.3832 -5.6405 -1.4885 21 1 1.0147 -5.4503 0.5044 22 1 3.3351 -6.1305 0.6873 23 1 -0.3634 -0.0004 1.0276 24 1 -0.3634 0.8902 -0.5135 25 1 -0.3634 -0.8897 -0.5142 26 1 4.9598 1.9305 -2.1348 27 1 3.7051 2.9398 -1.3614 28 1 5.5463 4.4810 -1.6709 29 1 6.7556 3.2537 -1.1675 30 1 3.6810 2.6594 1.5786 31 1 5.2903 2.0426 2.0580 32 1 4.7990 -3.8805 0.4641 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260042254.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:55 Heat of formation + Delta-G solvation = -103.924822 kcal Electronic energy + Delta-G solvation = -18798.594417 eV Core-core repulsion = 15658.014849 eV Total energy + Delta-G solvation = -3140.579568 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.071 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.01466 -38.10342 -37.73971 -37.03119 -35.72551 -35.12928 -32.22211 -30.78118 -29.27689 -27.25795 -25.23734 -23.31461 -21.53827 -21.09545 -19.80750 -19.40296 -17.75868 -17.70408 -17.09755 -16.72127 -16.58700 -16.30054 -15.36749 -15.09595 -14.96651 -14.65819 -13.79503 -13.78662 -13.58561 -13.28403 -13.20870 -13.13175 -13.09180 -12.95848 -12.93768 -12.76013 -12.48996 -12.08399 -11.97154 -11.74184 -11.45864 -11.27605 -11.13751 -10.78996 -9.36088 -8.87198 -6.53126 -0.89992 1.04778 1.37212 1.52192 1.53586 1.66715 2.12777 2.18654 2.63921 2.64912 3.07079 3.12147 3.38542 3.71937 3.79298 3.86777 4.01155 4.10542 4.55249 4.62586 4.66145 4.81223 4.89748 4.96626 5.02479 5.03745 5.12816 5.15134 5.40703 5.67026 6.09115 6.31743 6.48782 6.58124 7.66565 8.14572 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.032270 B = 0.004981 C = 0.004575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.476911 B = 5619.956056 C = 6118.331754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 C -0.235 4.235 3 N -0.456 5.456 4 C 0.022 3.978 5 C 0.038 3.962 6 H 0.116 0.884 7 C -0.110 4.110 8 C -0.550 4.550 9 S 2.413 3.587 10 O -0.973 6.973 11 O -0.969 6.969 12 C -0.584 4.584 13 O -0.212 6.212 14 C 0.146 3.854 15 C -0.456 4.456 16 H 0.119 0.881 17 C 0.023 3.977 18 N -0.808 5.808 19 Si 1.005 2.995 20 H -0.257 1.257 21 H -0.249 1.249 22 H -0.267 1.267 23 H 0.045 0.955 24 H 0.056 0.944 25 H 0.062 0.938 26 H 0.110 0.890 27 H 0.084 0.916 28 H 0.168 0.832 29 H 0.171 0.829 30 H 0.125 0.875 31 H 0.148 0.852 32 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.784 4.232 -3.391 6.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.361 4.361 3 N -0.185 5.185 4 C -0.179 4.179 5 C 0.017 3.983 6 H 0.134 0.866 7 C -0.149 4.149 8 C -0.683 4.683 9 S 2.600 3.400 10 O -0.971 6.971 11 O -0.966 6.966 12 C -0.713 4.713 13 O -0.102 6.102 14 C 0.091 3.909 15 C -0.485 4.485 16 H 0.137 0.863 17 C -0.195 4.195 18 N -0.434 5.434 19 Si 0.823 3.177 20 H -0.181 1.181 21 H -0.172 1.172 22 H -0.191 1.191 23 H 0.064 0.936 24 H 0.075 0.925 25 H 0.080 0.920 26 H 0.128 0.872 27 H 0.103 0.897 28 H 0.186 0.814 29 H 0.189 0.811 30 H 0.143 0.857 31 H 0.166 0.834 32 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.097 5.683 -2.782 7.538 hybrid contribution -0.217 -2.203 -0.109 2.216 sum 3.880 3.480 -2.891 5.960 Atomic orbital electron populations 1.19458 0.86942 1.01069 1.00246 1.21940 0.97430 0.87483 1.29214 1.69167 1.01168 1.33087 1.15092 1.25180 0.94511 0.80631 1.17606 1.19597 0.93123 0.92711 0.92830 0.86569 1.22255 0.99379 0.95038 0.98200 1.30459 1.09075 1.08619 1.20150 1.08258 0.74357 0.76650 0.80765 1.93556 1.62514 1.54057 1.86943 1.93552 1.42326 1.85994 1.74735 1.30640 1.14377 1.19639 1.06641 1.84657 1.30386 1.21749 1.73394 1.20888 0.79862 0.95601 0.94558 1.19196 0.96880 0.86987 1.45390 0.86295 1.27222 0.93940 1.07468 0.90918 1.69817 1.03760 1.38522 1.31298 0.84852 0.79840 0.73153 0.79831 1.18141 1.17179 1.19086 0.93587 0.92519 0.91950 0.87157 0.89738 0.81408 0.81147 0.85672 0.83433 0.89287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.82 10.24 71.23 0.73 -0.09 16 2 C -0.24 -12.04 7.27 42.61 0.31 -11.73 16 3 N -0.46 -22.53 10.90 -288.42 -3.14 -25.68 16 4 C 0.02 1.04 6.76 88.26 0.60 1.64 16 5 C 0.04 1.24 3.08 -10.85 -0.03 1.21 16 6 H 0.12 3.38 8.14 -2.39 -0.02 3.36 16 7 C -0.11 -2.76 5.79 31.59 0.18 -2.57 16 8 C -0.55 -9.23 7.31 72.69 0.53 -8.70 16 9 S 2.41 59.04 6.10 -56.49 -0.34 58.69 16 10 O -0.97 -31.09 18.14 -127.47 -2.31 -33.41 16 11 O -0.97 -28.23 18.15 -127.47 -2.31 -30.55 16 12 C -0.58 -17.06 6.74 72.38 0.49 -16.57 16 13 O -0.21 -11.60 9.24 -11.75 -0.11 -11.71 16 14 C 0.15 7.97 6.80 22.94 0.16 8.12 16 15 C -0.46 -23.37 9.09 23.13 0.21 -23.16 16 16 H 0.12 5.58 7.31 -2.91 -0.02 5.56 16 17 C 0.02 1.09 5.49 85.32 0.47 1.56 16 18 N -0.81 -40.96 12.12 21.87 0.27 -40.69 16 19 Si 1.00 34.90 29.57 68.60 2.03 36.93 16 20 H -0.26 -8.59 7.11 99.48 0.71 -7.88 16 21 H -0.25 -8.19 7.11 99.48 0.71 -7.49 16 22 H -0.27 -8.83 7.11 99.48 0.71 -8.13 16 23 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 24 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 25 H 0.06 2.41 7.55 -2.39 -0.02 2.39 16 26 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 27 H 0.08 2.38 8.02 -2.39 -0.02 2.36 16 28 H 0.17 1.96 8.14 -2.39 -0.02 1.95 16 29 H 0.17 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.12 4.22 7.70 -2.39 -0.02 4.20 16 31 H 0.15 3.86 8.14 -2.39 -0.02 3.84 16 32 H 0.30 13.35 8.30 -92.71 -0.77 12.58 16 Total: -1.00 -74.49 289.97 -1.15 -75.64 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: 1.14 Total: 21.05 kcal Atomic # 6 Polarization: -53.93 SS G_CDS: 3.64 Total: -50.29 kcal Atomic # 7 Polarization: -63.49 SS G_CDS: -2.88 Total: -66.37 kcal Atomic # 8 Polarization: -70.93 SS G_CDS: -4.73 Total: -75.66 kcal Atomic # 14 Polarization: 34.90 SS G_CDS: 2.03 Total: 36.93 kcal Atomic # 16 Polarization: 59.04 SS G_CDS: -0.34 Total: 58.69 kcal Total: -74.49 -1.15 -75.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260042254.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.281 kcal (2) G-P(sol) polarization free energy of solvation -74.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds