Wall clock time and date at job start Mon Mar 30 2020 05:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86804 * 119.99809 * 2 1 4 4 H 1.48500 * 109.46864 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46991 * 300.00050 * 3 2 1 6 6 H 1.48496 * 109.47310 * 59.99769 * 3 2 1 7 7 C 1.37877 * 119.99953 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99556 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00020 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.70757 * 52.26174 * 9 7 2 11 11 C 1.52875 * 109.61921 * 291.96405 * 9 7 2 12 12 O 1.42962 * 109.29795 * 188.11698 * 11 9 7 13 13 C 1.42964 * 114.16595 * 62.44897 * 12 11 9 14 14 C 1.53293 * 109.22014 * 297.41556 * 13 12 11 15 15 N 1.47148 * 109.68025 * 172.80110 * 9 7 2 16 16 C 1.34782 * 120.98213 * 350.27795 * 15 9 7 17 17 O 1.21276 * 119.99856 * 351.54865 * 16 15 9 18 18 C 1.50704 * 119.99668 * 171.54400 * 16 15 9 19 19 H 1.08995 * 110.38651 * 326.20670 * 18 16 15 20 20 C 1.53711 * 110.33693 * 203.98418 * 18 16 15 21 21 C 1.52936 * 112.48801 * 243.95393 * 20 18 16 22 22 C 1.55157 * 108.81045 * 329.98959 * 21 20 18 23 23 S 1.83386 * 110.33953 * 88.44106 * 18 16 15 24 24 H 0.97000 * 119.99707 * 0.02562 * 1 2 3 25 25 H 1.08993 * 109.58618 * 68.09952 * 11 9 7 26 26 H 1.09004 * 109.36413 * 307.99363 * 11 9 7 27 27 H 1.09002 * 109.50720 * 177.49946 * 13 12 11 28 28 H 1.08996 * 109.51750 * 57.34226 * 13 12 11 29 29 H 1.09001 * 109.68922 * 292.58272 * 14 13 12 30 30 H 1.09002 * 109.71453 * 172.04382 * 14 13 12 31 31 H 1.08994 * 108.88867 * 123.16134 * 20 18 16 32 32 H 1.09001 * 108.77710 * 4.67132 * 20 18 16 33 33 H 1.09000 * 109.60890 * 89.83265 * 21 20 18 34 34 H 1.09002 * 109.60487 * 210.15648 * 21 20 18 35 35 H 1.09005 * 111.12854 * 159.25936 * 22 21 20 36 36 H 1.09000 * 111.13348 * 283.43630 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0017 10 1 0.5230 -2.5040 -0.8095 11 6 0.5285 -2.6735 1.3376 12 8 -0.0258 -3.9895 1.4067 13 6 0.9464 -5.0369 1.3656 14 6 1.6889 -4.9839 0.0255 15 7 2.1937 -3.6157 -0.1715 16 6 3.4826 -3.3917 -0.4957 17 8 3.8464 -2.2752 -0.7987 18 6 4.4717 -4.5287 -0.4815 19 1 4.2230 -5.2384 0.3075 20 6 5.8991 -3.9925 -0.2875 21 6 6.7965 -4.2677 -1.4950 22 6 6.3215 -5.5743 -2.1839 23 16 4.4990 -5.3701 -2.1107 24 1 -0.4850 0.8401 -0.0004 25 1 -0.2708 -1.9370 1.4195 26 1 1.2381 -2.5340 2.1532 27 1 0.4475 -6.0007 1.4675 28 1 1.6574 -4.9060 2.1812 29 1 1.0058 -5.2432 -0.7833 30 1 2.5237 -5.6846 0.0398 31 1 6.3368 -4.4645 0.5921 32 1 5.8502 -2.9163 -0.1221 33 1 6.7280 -3.4377 -2.1982 34 1 7.8289 -4.3829 -1.1647 35 1 6.6673 -5.6221 -3.2165 36 1 6.6413 -6.4527 -1.6233 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260063030.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:27 Heat of formation + Delta-G solvation = -67.665299 kcal Electronic energy + Delta-G solvation = -19882.130151 eV Core-core repulsion = 16878.956008 eV Total energy + Delta-G solvation = -3003.174142 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.34519 -39.24226 -36.66638 -35.64250 -35.08843 -32.14792 -30.93875 -28.82842 -26.86091 -26.35023 -24.26952 -23.20738 -21.63718 -20.03745 -19.52555 -18.06373 -17.47981 -17.31935 -16.72575 -16.34052 -16.10894 -15.91857 -15.62315 -15.31586 -15.08994 -14.72670 -14.26441 -14.07398 -13.70995 -13.31710 -13.03307 -12.83479 -12.71456 -12.63008 -12.39476 -12.34031 -12.14228 -11.84160 -11.54461 -11.35619 -11.02733 -10.94790 -10.66310 -9.55880 -9.16517 -8.73037 -8.17641 -6.18617 0.46084 1.31223 1.35416 1.37823 1.52770 2.09050 2.14258 2.44407 3.02744 3.19711 3.43860 3.55548 3.78574 3.98573 4.01275 4.10095 4.25058 4.29292 4.32294 4.44021 4.64579 4.70114 4.74594 4.75403 4.84769 4.98792 5.07398 5.13184 5.22970 5.36758 5.61012 5.89155 6.00233 6.38549 6.81062 7.04122 7.36512 7.65001 8.93524 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.018093 B = 0.007855 C = 0.005894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.154062 B = 3563.713028 C = 4749.447338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.005 3.995 3 Si 0.961 3.039 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.550 4.550 8 H 0.128 0.872 9 C 0.250 3.750 10 H -0.006 1.006 11 C 0.081 3.919 12 O -0.410 6.410 13 C 0.044 3.956 14 C 0.069 3.931 15 N -0.609 5.609 16 C 0.516 3.484 17 O -0.533 6.533 18 C -0.059 4.059 19 H 0.135 0.865 20 C -0.123 4.123 21 C -0.118 4.118 22 C -0.055 4.055 23 S -0.306 6.306 24 H 0.260 0.740 25 H 0.088 0.912 26 H 0.035 0.965 27 H 0.136 0.864 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.117 0.883 31 H 0.105 0.895 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.116 0.884 35 H 0.120 0.880 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.516 -15.078 1.438 19.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.193 4.193 3 Si 0.787 3.213 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.588 4.588 8 H 0.144 0.856 9 C 0.148 3.852 10 H 0.011 0.989 11 C 0.003 3.997 12 O -0.329 6.329 13 C -0.033 4.033 14 C -0.054 4.054 15 N -0.343 5.343 16 C 0.303 3.697 17 O -0.411 6.411 18 C -0.190 4.190 19 H 0.153 0.847 20 C -0.162 4.162 21 C -0.157 4.157 22 C -0.202 4.202 23 S -0.081 6.081 24 H 0.069 0.931 25 H 0.106 0.894 26 H 0.053 0.947 27 H 0.153 0.847 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.135 0.865 31 H 0.124 0.876 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.134 0.866 35 H 0.139 0.861 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 11.475 -14.736 0.521 18.684 hybrid contribution 0.640 1.666 0.462 1.844 sum 12.116 -13.069 0.983 17.848 Atomic orbital electron populations 1.70085 1.07101 1.27321 1.52829 1.25846 0.95562 1.02651 0.95202 0.85449 0.78844 0.79524 0.77454 1.19896 1.21194 1.20000 1.23380 0.97868 0.89435 1.48079 0.85611 1.19243 0.87640 0.85059 0.93282 0.98862 1.22791 0.97827 0.82520 0.96521 1.87859 1.34826 1.15621 1.94574 1.23184 0.92332 0.92365 0.95374 1.22629 1.00375 0.83296 0.99068 1.48303 1.09647 1.07963 1.68353 1.20473 0.82743 0.89326 0.77207 1.90435 1.79132 1.24320 1.47234 1.23975 0.98523 0.98167 0.98342 0.84743 1.22042 0.89977 1.03033 1.01165 1.22349 1.01071 0.96280 0.95985 1.24529 0.88180 1.01447 1.06066 1.88100 1.16209 1.75680 1.28065 0.93074 0.89356 0.94706 0.84656 0.92222 0.91627 0.86511 0.87632 0.91499 0.92290 0.86567 0.86143 0.86075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.42 12.02 21.45 0.26 -56.16 16 2 C 0.00 0.29 5.35 84.65 0.45 0.74 16 3 Si 0.96 47.73 29.54 68.60 2.03 49.75 16 4 H -0.27 -13.67 7.11 99.48 0.71 -12.96 16 5 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 6 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 7 C -0.55 -32.37 7.44 25.60 0.19 -32.18 16 8 H 0.13 7.66 4.14 -94.03 -0.39 7.27 16 9 C 0.25 13.39 2.90 44.08 0.13 13.52 16 10 H -0.01 -0.39 8.13 -2.38 -0.02 -0.41 16 11 C 0.08 3.98 6.04 71.94 0.43 4.41 16 12 O -0.41 -17.22 10.74 -148.98 -1.60 -18.82 16 13 C 0.04 1.34 6.98 72.08 0.50 1.84 16 14 C 0.07 2.21 6.53 86.35 0.56 2.77 16 15 N -0.61 -26.38 3.03 -798.45 -2.42 -28.80 16 16 C 0.52 21.70 6.71 87.66 0.59 22.29 16 17 O -0.53 -27.37 11.50 -3.02 -0.03 -27.40 16 18 C -0.06 -1.70 2.70 30.09 0.08 -1.62 16 19 H 0.13 3.07 6.60 -2.39 -0.02 3.06 16 20 C -0.12 -2.99 5.89 30.81 0.18 -2.81 16 21 C -0.12 -2.23 6.35 31.31 0.20 -2.03 16 22 C -0.05 -0.91 7.49 72.72 0.54 -0.37 16 23 S -0.31 -8.41 22.55 -56.49 -1.27 -9.68 16 24 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 25 H 0.09 4.86 6.94 -2.39 -0.02 4.84 16 26 H 0.03 1.68 8.13 -2.38 -0.02 1.66 16 27 H 0.14 2.92 8.14 -2.39 -0.02 2.90 16 28 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.12 2.85 5.57 -2.39 -0.01 2.84 16 31 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.07 2.12 6.69 -2.39 -0.02 2.11 16 33 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.12 1.69 8.14 -2.38 -0.02 1.67 16 36 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -74.78 294.73 1.53 -73.25 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: 0.71 Total: 11.29 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: 3.87 Total: 6.56 kcal Atomic # 7 Polarization: -82.80 SS G_CDS: -2.16 Total: -84.96 kcal Atomic # 8 Polarization: -44.58 SS G_CDS: -1.64 Total: -46.22 kcal Atomic # 14 Polarization: 47.73 SS G_CDS: 2.03 Total: 49.75 kcal Atomic # 16 Polarization: -8.41 SS G_CDS: -1.27 Total: -9.68 kcal Total: -74.78 1.53 -73.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260063030.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.585 kcal (2) G-P(sol) polarization free energy of solvation -74.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds