Wall clock time and date at job start Mon Mar 30 2020 04:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50692 * 108.89656 * 2 1 4 4 C 1.35939 * 126.32258 * 300.69993 * 3 2 1 5 5 N 1.33061 * 107.98045 * 179.97438 * 4 3 2 6 6 C 1.32816 * 108.64946 * 359.97438 * 5 4 3 7 7 C 1.39801 * 125.79693 * 179.97438 * 6 5 4 8 8 H 1.08001 * 120.00070 * 186.15020 * 7 6 5 9 9 C 1.40343 * 120.00069 * 6.14937 * 7 6 5 10 10 N 1.30626 * 120.00270 * 184.10484 * 9 7 6 11 11 Si 1.86799 * 119.99991 * 4.10965 * 9 7 6 12 12 H 1.48498 * 109.47319 * 179.97438 * 11 9 7 13 13 H 1.48512 * 109.47055 * 299.99514 * 11 9 7 14 14 H 1.48496 * 109.47543 * 59.99208 * 11 9 7 15 15 O 1.34606 * 126.32168 * 120.94499 * 3 2 1 16 16 C 1.52971 * 108.93071 * 241.31356 * 2 1 3 17 17 C 1.54789 * 108.82297 * 209.43000 * 16 2 1 18 18 S 1.83835 * 101.16267 * 41.87069 * 17 16 2 19 19 O 1.42102 * 109.61184 * 211.07557 * 18 17 16 20 20 O 1.42094 * 109.61897 * 77.12259 * 18 17 16 21 21 C 1.53624 * 108.92986 * 118.68311 * 2 1 3 22 22 H 1.08994 * 109.47101 * 59.30138 * 1 2 3 23 23 H 1.09001 * 109.47231 * 179.30149 * 1 2 3 24 24 H 1.09001 * 109.47487 * 299.29861 * 1 2 3 25 25 H 1.07993 * 126.00701 * 359.95820 * 4 3 2 26 26 H 0.97002 * 119.99606 * 354.84679 * 10 9 7 27 27 H 1.08997 * 109.65373 * 329.31335 * 16 2 1 28 28 H 1.08998 * 109.65023 * 89.63165 * 16 2 1 29 29 H 1.08998 * 111.07074 * 283.90381 * 17 16 2 30 30 H 1.09008 * 111.14564 * 159.86605 * 17 16 2 31 31 H 1.08999 * 110.26994 * 241.94011 * 21 2 1 32 32 H 1.09004 * 110.26899 * 3.99701 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0181 1.4257 0.0000 4 6 1.7498 2.3686 -0.9418 5 7 2.3607 3.4945 -0.5814 6 6 3.0037 3.2819 0.5611 7 6 3.7642 4.2247 1.2591 8 1 4.3298 3.9252 2.1290 9 6 3.7926 5.5604 0.8294 10 7 4.5650 6.4242 1.4323 11 14 2.7256 6.1031 -0.6046 12 1 2.9367 7.5509 -0.8587 13 1 3.0941 5.3285 -1.8169 14 1 1.2972 5.8615 -0.2782 15 8 2.8039 1.9994 0.9302 16 6 2.0263 -0.6946 -1.2694 17 6 3.3954 -1.3541 -0.9751 18 16 3.0952 -2.0685 0.6920 19 8 4.3080 -2.0772 1.4326 20 8 2.3231 -3.2552 0.5706 21 6 2.0284 -0.6975 1.2748 22 1 -0.3633 0.5246 -0.8836 23 1 -0.3634 -1.0276 -0.0125 24 1 -0.3634 0.5029 0.8962 25 1 1.1472 2.2284 -1.8268 26 1 5.0620 6.1614 2.2227 27 1 1.3103 -1.4580 -1.5733 28 1 2.1390 0.0385 -2.0681 29 1 4.1908 -0.6095 -0.9451 30 1 3.6199 -2.1351 -1.7016 31 1 2.6059 -0.0024 1.8844 32 1 1.1860 -1.0903 1.8443 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260270187.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:18 Heat of formation + Delta-G solvation = -73.205799 kcal Electronic energy + Delta-G solvation = -19261.100226 eV Core-core repulsion = 16121.852735 eV Total energy + Delta-G solvation = -3139.247491 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.071 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.66032 -37.70846 -36.92103 -35.96105 -34.11449 -33.09413 -31.12611 -29.39850 -27.83378 -25.56613 -23.86723 -21.77875 -20.90645 -19.18127 -18.86553 -18.32553 -16.93989 -16.51889 -15.67724 -15.64451 -15.12955 -14.49627 -14.08648 -13.99367 -13.49452 -13.48223 -13.29881 -12.65690 -12.31155 -12.15446 -12.14974 -12.03199 -11.92689 -11.50015 -11.26691 -11.19797 -11.12811 -10.66883 -10.51201 -10.11156 -9.93272 -9.86522 -9.34982 -8.24418 -7.84562 -7.56253 -5.01145 0.09850 2.47566 2.67324 3.45649 3.49056 3.57439 3.87655 3.91305 3.99555 4.04937 4.29248 4.50068 4.58319 4.69586 4.90546 4.96188 5.00359 5.33916 5.53159 5.58803 5.67263 5.69460 5.76341 5.82780 6.05632 6.21431 6.23517 6.38551 7.23888 7.27998 7.43081 7.85686 8.03969 8.36865 9.30735 9.83261 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.032661 B = 0.005904 C = 0.005401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.073434 B = 4741.135365 C = 5182.919931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.063 3.937 3 C -0.193 4.193 4 C 0.031 3.969 5 N -0.618 5.618 6 C 0.336 3.664 7 C -0.479 4.479 8 H 0.091 0.909 9 C 0.061 3.939 10 N -0.794 5.794 11 Si 1.130 2.870 12 H -0.317 1.317 13 H -0.265 1.265 14 H -0.284 1.284 15 O -0.234 6.234 16 C -0.116 4.116 17 C -0.573 4.573 18 S 2.375 3.625 19 O -0.941 6.941 20 O -0.941 6.941 21 C -0.575 4.575 22 H 0.066 0.934 23 H 0.063 0.937 24 H 0.065 0.935 25 H 0.153 0.847 26 H 0.287 0.713 27 H 0.090 0.910 28 H 0.103 0.897 29 H 0.138 0.862 30 H 0.134 0.866 31 H 0.148 0.852 32 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.800 -11.927 -4.247 13.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.061 3.939 3 C -0.247 4.247 4 C -0.113 4.113 5 N -0.353 5.353 6 C 0.156 3.844 7 C -0.514 4.514 8 H 0.109 0.891 9 C -0.161 4.161 10 N -0.418 5.418 11 Si 0.959 3.041 12 H -0.248 1.248 13 H -0.191 1.191 14 H -0.211 1.211 15 O -0.131 6.131 16 C -0.154 4.154 17 C -0.703 4.703 18 S 2.560 3.440 19 O -0.939 6.939 20 O -0.938 6.938 21 C -0.705 4.705 22 H 0.085 0.915 23 H 0.082 0.918 24 H 0.084 0.916 25 H 0.170 0.830 26 H 0.099 0.901 27 H 0.109 0.891 28 H 0.122 0.878 29 H 0.157 0.843 30 H 0.152 0.848 31 H 0.166 0.834 32 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -5.716 -10.949 -4.926 13.298 hybrid contribution 0.253 -1.231 1.226 1.756 sum -5.463 -12.180 -3.701 13.853 Atomic orbital electron populations 1.22052 0.92221 1.01947 1.03388 1.18555 0.96347 0.88674 0.90334 1.21971 1.10538 0.95996 0.96220 1.22449 1.00365 0.89484 0.98955 1.69940 1.23295 1.26748 1.15365 1.22326 0.92804 0.79914 0.89405 1.19526 1.25636 0.92934 1.13318 0.89140 1.27545 0.95079 0.91190 1.02332 1.70606 1.17493 1.37892 1.15771 0.82405 0.75143 0.71577 0.74943 1.24834 1.19124 1.21098 1.84352 1.57562 1.25676 1.45543 1.22285 0.92991 1.01200 0.98954 1.30421 1.05865 1.12203 1.21789 1.09429 0.76933 0.77804 0.79820 1.93604 1.43495 1.87443 1.69314 1.93596 1.71347 1.42751 1.86145 1.30464 1.15604 1.17586 1.06888 0.91475 0.91785 0.91639 0.82980 0.90115 0.89148 0.87835 0.84345 0.84766 0.83420 0.84548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 7.79 37.16 0.29 -1.33 16 2 C 0.06 0.87 0.79 -155.35 -0.12 0.75 16 3 C -0.19 -3.70 5.66 -35.14 -0.20 -3.90 16 4 C 0.03 0.63 10.70 -17.84 -0.19 0.44 16 5 N -0.62 -15.30 6.43 -13.43 -0.09 -15.39 16 6 C 0.34 8.68 7.49 -16.54 -0.12 8.56 16 7 C -0.48 -12.86 9.89 -38.21 -0.38 -13.23 16 8 H 0.09 2.43 8.06 -52.49 -0.42 2.01 16 9 C 0.06 1.62 5.52 -17.27 -0.10 1.52 16 10 N -0.79 -20.85 13.64 55.57 0.76 -20.09 16 11 Si 1.13 26.90 25.87 -169.99 -4.40 22.50 16 12 H -0.32 -7.35 7.11 56.52 0.40 -6.95 16 13 H -0.27 -6.37 6.75 56.52 0.38 -5.98 16 14 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 15 O -0.23 -5.48 9.39 3.11 0.03 -5.45 16 16 C -0.12 -1.30 5.26 -25.80 -0.14 -1.44 16 17 C -0.57 -6.32 7.45 38.10 0.28 -6.03 16 18 S 2.38 30.72 6.05 -107.50 -0.65 30.07 16 19 O -0.94 -15.88 18.16 -57.67 -1.05 -16.93 16 20 O -0.94 -13.71 18.16 -57.67 -1.05 -14.76 16 21 C -0.58 -7.60 6.54 37.48 0.25 -7.36 16 22 H 0.07 0.73 7.95 -51.93 -0.41 0.32 16 23 H 0.06 0.59 8.11 -51.93 -0.42 0.16 16 24 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 25 H 0.15 2.52 8.06 -52.49 -0.42 2.10 16 26 H 0.29 7.20 8.72 -40.82 -0.36 6.84 16 27 H 0.09 0.77 7.81 -51.93 -0.41 0.37 16 28 H 0.10 1.18 7.24 -51.93 -0.38 0.80 16 29 H 0.14 1.65 8.14 -51.93 -0.42 1.23 16 30 H 0.13 1.10 8.14 -51.92 -0.42 0.68 16 31 H 0.15 2.26 6.56 -51.93 -0.34 1.92 16 32 H 0.14 1.44 7.63 -51.93 -0.40 1.05 16 LS Contribution 280.33 15.07 4.22 4.22 Total: -1.00 -33.04 280.33 -6.28 -39.33 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: -3.64 Total: -1.49 kcal Atomic # 6 Polarization: -21.59 SS G_CDS: -0.43 Total: -22.02 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: 0.67 Total: -35.49 kcal Atomic # 8 Polarization: -35.07 SS G_CDS: -2.07 Total: -37.13 kcal Atomic # 14 Polarization: 26.90 SS G_CDS: -4.40 Total: 22.50 kcal Atomic # 16 Polarization: 30.72 SS G_CDS: -0.65 Total: 30.07 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -33.04 -6.28 -39.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260270187.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.880 kcal (2) G-P(sol) polarization free energy of solvation -33.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds