Wall clock time and date at job start Mon Mar 30 2020 04:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50692 * 108.89656 * 2 1 4 4 C 1.35939 * 126.32258 * 300.69993 * 3 2 1 5 5 N 1.33061 * 107.98045 * 179.97438 * 4 3 2 6 6 C 1.32816 * 108.64946 * 359.97438 * 5 4 3 7 7 C 1.39801 * 125.79693 * 179.97438 * 6 5 4 8 8 H 1.08001 * 120.00070 * 186.15020 * 7 6 5 9 9 C 1.40343 * 120.00069 * 6.14937 * 7 6 5 10 10 N 1.30626 * 120.00270 * 184.10484 * 9 7 6 11 11 Si 1.86799 * 119.99991 * 4.10965 * 9 7 6 12 12 H 1.48498 * 109.47319 * 179.97438 * 11 9 7 13 13 H 1.48512 * 109.47055 * 299.99514 * 11 9 7 14 14 H 1.48496 * 109.47543 * 59.99208 * 11 9 7 15 15 O 1.34606 * 126.32168 * 120.94499 * 3 2 1 16 16 C 1.52971 * 108.93071 * 241.31356 * 2 1 3 17 17 C 1.54789 * 108.82297 * 209.43000 * 16 2 1 18 18 S 1.83835 * 101.16267 * 41.87069 * 17 16 2 19 19 O 1.42102 * 109.61184 * 211.07557 * 18 17 16 20 20 O 1.42094 * 109.61897 * 77.12259 * 18 17 16 21 21 C 1.53624 * 108.92986 * 118.68311 * 2 1 3 22 22 H 1.08994 * 109.47101 * 59.30138 * 1 2 3 23 23 H 1.09001 * 109.47231 * 179.30149 * 1 2 3 24 24 H 1.09001 * 109.47487 * 299.29861 * 1 2 3 25 25 H 1.07993 * 126.00701 * 359.95820 * 4 3 2 26 26 H 0.97002 * 119.99606 * 354.84679 * 10 9 7 27 27 H 1.08997 * 109.65373 * 329.31335 * 16 2 1 28 28 H 1.08998 * 109.65023 * 89.63165 * 16 2 1 29 29 H 1.08998 * 111.07074 * 283.90381 * 17 16 2 30 30 H 1.09008 * 111.14564 * 159.86605 * 17 16 2 31 31 H 1.08999 * 110.26994 * 241.94011 * 21 2 1 32 32 H 1.09004 * 110.26899 * 3.99701 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0181 1.4257 0.0000 4 6 1.7498 2.3686 -0.9418 5 7 2.3607 3.4945 -0.5814 6 6 3.0037 3.2819 0.5611 7 6 3.7642 4.2247 1.2591 8 1 4.3298 3.9252 2.1290 9 6 3.7926 5.5604 0.8294 10 7 4.5650 6.4242 1.4323 11 14 2.7256 6.1031 -0.6046 12 1 2.9367 7.5509 -0.8587 13 1 3.0941 5.3285 -1.8169 14 1 1.2972 5.8615 -0.2782 15 8 2.8039 1.9994 0.9302 16 6 2.0263 -0.6946 -1.2694 17 6 3.3954 -1.3541 -0.9751 18 16 3.0952 -2.0685 0.6920 19 8 4.3080 -2.0772 1.4326 20 8 2.3231 -3.2552 0.5706 21 6 2.0284 -0.6975 1.2748 22 1 -0.3633 0.5246 -0.8836 23 1 -0.3634 -1.0276 -0.0125 24 1 -0.3634 0.5029 0.8962 25 1 1.1472 2.2284 -1.8268 26 1 5.0620 6.1614 2.2227 27 1 1.3103 -1.4580 -1.5733 28 1 2.1390 0.0385 -2.0681 29 1 4.1908 -0.6095 -0.9451 30 1 3.6199 -2.1351 -1.7016 31 1 2.6059 -0.0024 1.8844 32 1 1.1860 -1.0903 1.8443 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260270187.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:18 Heat of formation + Delta-G solvation = -99.256019 kcal Electronic energy + Delta-G solvation = -19262.229848 eV Core-core repulsion = 16121.852735 eV Total energy + Delta-G solvation = -3140.377113 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.071 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.45824 -38.83698 -38.05974 -37.11012 -36.04734 -34.94441 -32.17790 -31.10065 -28.90991 -27.17292 -24.90242 -23.38998 -22.66220 -20.62211 -20.27292 -19.88145 -18.24324 -17.58719 -17.15471 -16.87334 -16.76543 -15.94097 -15.66873 -15.34647 -15.07770 -14.73641 -14.32024 -14.03588 -13.95103 -13.35003 -13.30285 -13.19842 -13.10687 -12.96380 -12.66692 -12.48302 -12.24207 -12.06529 -11.89323 -11.74264 -11.63503 -11.29564 -11.18642 -10.09215 -9.67496 -9.51386 -6.94391 -0.93665 0.87889 1.47849 1.56799 1.63320 1.99784 2.19782 2.31468 2.41359 2.57976 2.95247 3.00056 3.42289 3.59077 3.70643 3.81382 4.04861 4.08136 4.30434 4.48641 4.62677 4.66310 4.72128 4.89820 4.93626 5.00701 5.17114 5.25757 5.33742 5.55086 5.70370 5.90862 6.11087 6.43888 7.47947 7.84474 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.032661 B = 0.005904 C = 0.005401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.073434 B = 4741.135365 C = 5182.919931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.056 3.944 3 C -0.164 4.164 4 C 0.002 3.998 5 N -0.630 5.630 6 C 0.313 3.687 7 C -0.514 4.514 8 H 0.071 0.929 9 C 0.037 3.963 10 N -0.815 5.815 11 Si 1.166 2.834 12 H -0.309 1.309 13 H -0.268 1.268 14 H -0.288 1.288 15 O -0.246 6.246 16 C -0.118 4.118 17 C -0.559 4.559 18 S 2.390 3.610 19 O -0.989 6.989 20 O -0.953 6.953 21 C -0.581 4.581 22 H 0.080 0.920 23 H 0.099 0.901 24 H 0.052 0.948 25 H 0.195 0.805 26 H 0.285 0.715 27 H 0.133 0.867 28 H 0.110 0.890 29 H 0.128 0.872 30 H 0.172 0.828 31 H 0.121 0.879 32 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.841 -14.040 -6.530 17.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.054 3.946 3 C -0.217 4.217 4 C -0.138 4.138 5 N -0.366 5.366 6 C 0.129 3.871 7 C -0.550 4.550 8 H 0.089 0.911 9 C -0.182 4.182 10 N -0.440 5.440 11 Si 0.993 3.007 12 H -0.239 1.239 13 H -0.194 1.194 14 H -0.215 1.215 15 O -0.142 6.142 16 C -0.156 4.156 17 C -0.691 4.691 18 S 2.578 3.422 19 O -0.986 6.986 20 O -0.950 6.950 21 C -0.711 4.711 22 H 0.099 0.901 23 H 0.117 0.883 24 H 0.071 0.929 25 H 0.212 0.788 26 H 0.096 0.904 27 H 0.151 0.849 28 H 0.129 0.871 29 H 0.146 0.854 30 H 0.190 0.810 31 H 0.140 0.860 32 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -7.766 -13.103 -7.182 16.840 hybrid contribution 0.780 -0.815 1.894 2.205 sum -6.985 -13.918 -5.288 16.446 Atomic orbital electron populations 1.22117 0.89755 1.04389 1.03491 1.19010 0.98249 0.85325 0.92028 1.23213 1.06596 0.98106 0.93784 1.23093 1.01472 0.88340 1.00932 1.69884 1.23231 1.28804 1.14690 1.22323 0.93954 0.80645 0.90191 1.19478 1.27554 0.94011 1.13935 0.91084 1.28269 0.95391 0.91130 1.03387 1.70618 1.18786 1.38080 1.16490 0.81930 0.73856 0.71634 0.73240 1.23901 1.19401 1.21539 1.84383 1.57809 1.25196 1.46801 1.22414 0.93694 1.02342 0.97183 1.30384 1.05856 1.12753 1.20111 1.08910 0.75635 0.77312 0.80309 1.93544 1.45547 1.88045 1.71466 1.93573 1.71353 1.43486 1.86601 1.30492 1.16478 1.17171 1.06933 0.90134 0.88259 0.92930 0.78811 0.90364 0.84909 0.87131 0.85373 0.81018 0.86040 0.81913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 7.79 71.98 0.56 -2.04 16 2 C 0.06 1.34 0.79 -52.73 -0.04 1.30 16 3 C -0.16 -5.93 5.66 25.15 0.14 -5.79 16 4 C 0.00 0.08 10.70 83.97 0.90 0.98 16 5 N -0.63 -30.62 6.43 -309.39 -1.99 -32.61 16 6 C 0.31 16.41 7.49 84.92 0.64 17.05 16 7 C -0.51 -28.77 9.89 23.16 0.23 -28.54 16 8 H 0.07 4.08 8.06 -2.91 -0.02 4.06 16 9 C 0.04 2.00 5.52 85.38 0.47 2.47 16 10 N -0.81 -44.20 13.64 21.90 0.30 -43.90 16 11 Si 1.17 55.04 25.87 68.60 1.77 56.82 16 12 H -0.31 -13.90 7.11 99.48 0.71 -13.20 16 13 H -0.27 -12.59 6.75 99.48 0.67 -11.92 16 14 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 15 O -0.25 -11.56 9.39 -11.80 -0.11 -11.67 16 16 C -0.12 -2.04 5.26 31.19 0.16 -1.88 16 17 C -0.56 -10.15 7.45 72.59 0.54 -9.61 16 18 S 2.39 56.63 6.05 -56.49 -0.34 56.29 16 19 O -0.99 -33.11 18.16 -127.52 -2.32 -35.43 16 20 O -0.95 -24.79 18.16 -127.52 -2.32 -27.11 16 21 C -0.58 -14.12 6.54 72.19 0.47 -13.65 16 22 H 0.08 1.31 7.95 -2.39 -0.02 1.29 16 23 H 0.10 1.21 8.11 -2.39 -0.02 1.19 16 24 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.20 5.57 8.06 -2.91 -0.02 5.55 16 26 H 0.29 14.99 8.72 -92.71 -0.81 14.18 16 27 H 0.13 1.32 7.81 -2.39 -0.02 1.30 16 28 H 0.11 1.90 7.24 -2.39 -0.02 1.88 16 29 H 0.13 2.73 8.14 -2.39 -0.02 2.71 16 30 H 0.17 1.90 8.14 -2.38 -0.02 1.88 16 31 H 0.12 3.71 6.56 -2.39 -0.02 3.70 16 32 H 0.16 2.99 7.63 -2.38 -0.02 2.97 16 Total: -1.00 -73.67 280.33 0.14 -73.54 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: 1.06 Total: 3.77 kcal Atomic # 6 Polarization: -43.78 SS G_CDS: 4.07 Total: -39.71 kcal Atomic # 7 Polarization: -74.82 SS G_CDS: -1.69 Total: -76.51 kcal Atomic # 8 Polarization: -69.46 SS G_CDS: -4.74 Total: -74.20 kcal Atomic # 14 Polarization: 55.04 SS G_CDS: 1.77 Total: 56.82 kcal Atomic # 16 Polarization: 56.63 SS G_CDS: -0.34 Total: 56.29 kcal Total: -73.67 0.14 -73.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260270187.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.720 kcal (2) G-P(sol) polarization free energy of solvation -73.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds