Wall clock time and date at job start Mon Mar 30 2020 04:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.34604 * 126.31589 * 2 1 4 4 C 1.34949 * 107.60231 * 179.97438 * 3 2 1 5 5 C 1.39801 * 125.79291 * 180.02562 * 4 3 2 6 6 H 1.08005 * 119.99521 * 179.97438 * 5 4 3 7 7 C 1.40340 * 120.00271 * 359.97438 * 5 4 3 8 8 N 1.30632 * 119.99914 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99830 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46988 * 60.00759 * 9 7 5 11 11 H 1.48508 * 109.46962 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.47430 * 299.99925 * 9 7 5 13 13 N 1.32810 * 108.40429 * 0.02562 * 4 3 2 14 14 C 1.33055 * 108.65066 * 359.76103 * 13 4 3 15 15 C 1.50705 * 126.00960 * 180.22918 * 14 13 4 16 16 H 1.09006 * 109.64202 * 180.87498 * 15 14 13 17 17 C 1.53869 * 109.64696 * 60.44764 * 15 14 13 18 18 C 1.55050 * 106.62848 * 192.96619 * 17 15 14 19 19 S 1.83291 * 102.56438 * 42.43055 * 18 17 15 20 20 O 1.42104 * 109.34993 * 90.18822 * 19 18 17 21 21 O 1.42096 * 109.35700 * 223.26004 * 19 18 17 22 22 C 1.54167 * 109.64620 * 301.30410 * 15 14 13 23 23 H 1.08995 * 109.47411 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.46596 * 120.02453 * 1 2 3 25 25 H 1.09004 * 109.46950 * 240.02273 * 1 2 3 26 26 H 0.96992 * 119.99814 * 179.97438 * 8 7 5 27 27 H 1.08998 * 110.02913 * 312.25736 * 17 15 14 28 28 H 1.09000 * 110.02710 * 73.67262 * 17 15 14 29 29 H 1.08995 * 110.79560 * 160.69988 * 18 17 15 30 30 H 1.08998 * 110.78847 * 284.16580 * 18 17 15 31 31 H 1.09001 * 110.32153 * 266.66061 * 22 15 14 32 32 H 1.08997 * 110.31775 * 28.85732 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.3042 1.0846 0.0000 4 6 3.5824 0.6516 0.0006 5 6 4.7206 1.4633 0.0013 6 1 5.7033 1.0152 0.0021 7 6 4.5863 2.8603 0.0009 8 7 3.3977 3.4022 -0.0006 9 14 6.1073 3.9447 0.0026 10 1 6.9181 3.6620 -1.2090 11 1 5.6975 5.3722 0.0012 12 1 6.9153 3.6624 1.2160 13 7 3.5752 -0.6764 0.0004 14 6 2.3123 -1.0951 0.0049 15 6 1.8549 -2.5311 0.0112 16 1 0.7656 -2.5687 -0.0017 17 6 2.3819 -3.2364 1.2731 18 6 2.1662 -4.7562 1.0547 19 16 2.6778 -4.9849 -0.6904 20 8 4.0662 -5.2839 -0.7387 21 8 1.7474 -5.8353 -1.3464 22 6 2.4134 -3.2584 -1.2281 23 1 -0.3634 1.0276 -0.0005 24 1 -0.3632 -0.5142 -0.8898 25 1 -0.3633 -0.5135 0.8902 26 1 3.3049 4.3677 -0.0005 27 1 3.4433 -3.0250 1.4032 28 1 1.8243 -2.9021 2.1480 29 1 2.8014 -5.3372 1.7234 30 1 1.1174 -5.0212 1.1883 31 1 1.6916 -3.2245 -2.0442 32 1 3.3570 -2.8090 -1.5374 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260342091.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:38 Heat of formation + Delta-G solvation = -101.923933 kcal Electronic energy + Delta-G solvation = -18830.366858 eV Core-core repulsion = 15689.874055 eV Total energy + Delta-G solvation = -3140.492803 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.071 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.04627 -38.10282 -37.90947 -37.02154 -35.70239 -34.30724 -32.76751 -30.72982 -29.64440 -26.90885 -25.12722 -23.11360 -22.06410 -20.91053 -19.78195 -19.43557 -17.68764 -17.39746 -17.11377 -16.68703 -16.59532 -16.13817 -15.42824 -14.97590 -14.92423 -14.71823 -14.02352 -13.65383 -13.55089 -13.28141 -13.17751 -13.10272 -13.07459 -12.98052 -12.94885 -12.85441 -12.53962 -12.05433 -11.87338 -11.63979 -11.48831 -11.28155 -11.03662 -10.52078 -9.22047 -8.83934 -6.67838 -0.85747 1.09947 1.37935 1.49989 1.53165 1.66321 2.15837 2.18367 2.68074 2.90737 3.08386 3.19720 3.48904 3.65714 3.87457 3.92359 4.08306 4.22657 4.47338 4.60457 4.69507 4.75405 4.84395 4.86613 4.93645 5.04944 5.11108 5.17320 5.26575 5.89257 5.98733 6.17788 6.54736 6.65677 7.83941 8.20688 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.030086 B = 0.005057 C = 0.004579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.440511 B = 5535.899715 C = 6114.020849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 C -0.206 4.206 3 O -0.211 6.211 4 C 0.311 3.689 5 C -0.466 4.466 6 H 0.109 0.891 7 C 0.030 3.970 8 N -0.812 5.812 9 Si 1.010 2.990 10 H -0.256 1.256 11 H -0.261 1.261 12 H -0.254 1.254 13 N -0.627 5.627 14 C 0.013 3.987 15 C 0.008 3.992 16 H 0.131 0.869 17 C -0.112 4.112 18 C -0.551 4.551 19 S 2.403 3.597 20 O -0.984 6.984 21 O -0.969 6.969 22 C -0.581 4.581 23 H 0.055 0.945 24 H 0.086 0.914 25 H 0.092 0.908 26 H 0.296 0.704 27 H 0.069 0.931 28 H 0.113 0.887 29 H 0.159 0.841 30 H 0.175 0.825 31 H 0.153 0.847 32 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.001 -8.060 2.674 10.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.261 4.261 3 O -0.104 6.104 4 C 0.126 3.874 5 C -0.501 4.501 6 H 0.126 0.874 7 C -0.189 4.189 8 N -0.440 5.440 9 Si 0.828 3.172 10 H -0.180 1.180 11 H -0.185 1.185 12 H -0.178 1.178 13 N -0.362 5.362 14 C -0.111 4.111 15 C -0.012 4.012 16 H 0.149 0.851 17 C -0.151 4.151 18 C -0.683 4.683 19 S 2.591 3.409 20 O -0.981 6.981 21 O -0.966 6.966 22 C -0.710 4.710 23 H 0.074 0.926 24 H 0.105 0.895 25 H 0.110 0.890 26 H 0.107 0.893 27 H 0.088 0.912 28 H 0.131 0.869 29 H 0.177 0.823 30 H 0.193 0.807 31 H 0.171 0.829 32 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -5.275 -9.055 2.125 10.693 hybrid contribution -0.062 1.957 0.133 1.963 sum -5.336 -7.098 2.258 9.163 Atomic orbital electron populations 1.19973 0.83454 1.02664 1.03450 1.23775 0.95951 0.85263 1.21084 1.84778 1.17638 1.34661 1.73308 1.22469 0.83277 0.88337 0.93316 1.18741 0.91237 0.90880 1.49249 0.87352 1.27129 1.01711 0.99437 0.90639 1.69755 1.26402 1.14648 1.33199 0.84830 0.75848 0.75984 0.80516 1.18005 1.18538 1.17758 1.70695 1.22088 1.08784 1.34583 1.21269 0.89335 0.95687 1.04845 1.19987 1.01960 0.87624 0.91659 0.85113 1.22220 1.03537 0.90441 0.98923 1.30443 1.14965 1.03090 1.19828 1.08483 0.74185 0.77353 0.80917 1.93549 1.33617 1.83823 1.87125 1.93544 1.64525 1.63982 1.74588 1.30503 1.11250 1.21656 1.07631 0.92635 0.89500 0.88959 0.89285 0.91226 0.86868 0.82310 0.80706 0.82863 0.86581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.23 9.69 71.24 0.69 -0.54 16 2 C -0.21 -9.39 7.42 25.15 0.19 -9.20 16 3 O -0.21 -11.92 9.06 -11.90 -0.11 -12.03 16 4 C 0.31 17.92 7.66 84.92 0.65 18.57 16 5 C -0.47 -25.85 9.45 23.16 0.22 -25.63 16 6 H 0.11 5.77 7.85 -2.91 -0.02 5.75 16 7 C 0.03 1.49 5.50 85.38 0.47 1.96 16 8 N -0.81 -42.81 11.98 21.90 0.26 -42.55 16 9 Si 1.01 37.15 29.56 68.60 2.03 39.17 16 10 H -0.26 -9.14 7.11 99.48 0.71 -8.43 16 11 H -0.26 -8.90 7.11 99.48 0.71 -8.19 16 12 H -0.25 -8.96 7.11 99.48 0.71 -8.26 16 13 N -0.63 -33.17 11.11 -297.41 -3.30 -36.48 16 14 C 0.01 0.59 5.54 41.84 0.23 0.82 16 15 C 0.01 0.22 2.98 -10.85 -0.03 0.19 16 16 H 0.13 2.78 7.46 -2.38 -0.02 2.76 16 17 C -0.11 -2.77 5.78 31.59 0.18 -2.59 16 18 C -0.55 -9.15 7.31 72.68 0.53 -8.62 16 19 S 2.40 59.58 6.10 -56.49 -0.34 59.24 16 20 O -0.98 -33.49 18.14 -127.47 -2.31 -35.80 16 21 O -0.97 -27.60 18.15 -127.47 -2.31 -29.91 16 22 C -0.58 -16.35 6.72 72.38 0.49 -15.86 16 23 H 0.05 1.81 8.14 -2.39 -0.02 1.80 16 24 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 25 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 26 H 0.30 13.86 8.29 -92.71 -0.77 13.09 16 27 H 0.07 2.14 8.09 -2.39 -0.02 2.12 16 28 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 29 H 0.16 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.18 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.15 3.53 8.14 -2.39 -0.02 3.51 16 32 H 0.12 4.09 7.71 -2.39 -0.02 4.07 16 Total: -1.00 -79.12 289.87 -1.34 -80.46 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: 1.14 Total: 18.80 kcal Atomic # 6 Polarization: -44.52 SS G_CDS: 3.62 Total: -40.90 kcal Atomic # 7 Polarization: -75.98 SS G_CDS: -3.04 Total: -79.03 kcal Atomic # 8 Polarization: -73.01 SS G_CDS: -4.73 Total: -77.74 kcal Atomic # 14 Polarization: 37.15 SS G_CDS: 2.03 Total: 39.17 kcal Atomic # 16 Polarization: 59.58 SS G_CDS: -0.34 Total: 59.24 kcal Total: -79.12 -1.34 -80.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260342091.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.462 kcal (2) G-P(sol) polarization free energy of solvation -79.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds