Wall clock time and date at job start Mon Mar 30 2020 04:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.34597 * 126.32160 * 2 1 4 4 C 1.34958 * 107.60486 * 180.12663 * 3 2 1 5 5 C 1.39797 * 125.79490 * 179.84043 * 4 3 2 6 6 H 1.08000 * 119.99947 * 185.93247 * 5 4 3 7 7 C 1.40338 * 120.00179 * 5.93537 * 5 4 3 8 8 N 1.30625 * 120.00066 * 183.59552 * 7 5 4 9 9 Si 1.86797 * 119.99960 * 3.59159 * 7 5 4 10 10 H 1.48505 * 109.47007 * 180.02562 * 9 7 5 11 11 H 1.48496 * 109.47219 * 60.00679 * 9 7 5 12 12 H 1.48502 * 109.47259 * 299.99899 * 9 7 5 13 13 N 1.32810 * 108.40180 * 359.57585 * 4 3 2 14 14 C 1.33062 * 108.65235 * 0.26669 * 13 4 3 15 15 C 1.50698 * 126.01152 * 179.97438 * 14 13 4 16 16 H 1.09005 * 109.64451 * 180.71899 * 15 14 13 17 17 C 1.53869 * 109.64843 * 301.15344 * 15 14 13 18 18 C 1.54973 * 106.66353 * 167.14840 * 17 15 14 19 19 S 1.83286 * 102.47959 * 317.38427 * 18 17 15 20 20 O 1.42098 * 109.35500 * 269.89839 * 19 18 17 21 21 O 1.42101 * 109.47296 * 136.72782 * 19 18 17 22 22 C 1.54173 * 109.64329 * 60.29583 * 15 14 13 23 23 H 1.09006 * 109.46701 * 270.34663 * 1 2 3 24 24 H 1.08998 * 109.47173 * 30.34279 * 1 2 3 25 25 H 1.09002 * 109.47768 * 150.34945 * 1 2 3 26 26 H 0.97006 * 119.99641 * 354.80206 * 8 7 5 27 27 H 1.09000 * 110.02884 * 286.32443 * 17 15 14 28 28 H 1.09001 * 110.02993 * 47.73839 * 17 15 14 29 29 H 1.09002 * 110.76322 * 199.17465 * 18 17 15 30 30 H 1.09003 * 111.06888 * 75.73457 * 18 17 15 31 31 H 1.08998 * 110.31946 * 331.13428 * 22 15 14 32 32 H 1.08997 * 110.31826 * 93.24055 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.3042 1.0845 0.0000 4 6 3.5824 0.6514 -0.0028 5 6 4.7207 1.4630 -0.0070 6 1 5.7002 1.0188 -0.1057 7 6 4.5906 2.8548 0.1172 8 7 5.6475 3.6187 0.0429 9 14 2.9060 3.6149 0.3886 10 1 3.0387 5.0908 0.4855 11 1 2.3214 3.0864 1.6472 12 1 2.0186 3.2720 -0.7517 13 7 3.5751 -0.6767 0.0048 14 6 2.3121 -1.0953 0.0065 15 6 1.8546 -2.5311 0.0140 16 1 0.7653 -2.5687 0.0009 17 6 2.4122 -3.2583 -1.2221 18 6 2.1886 -4.7733 -0.9849 19 16 2.6611 -4.9728 0.7747 20 8 4.0480 -5.2707 0.8591 21 8 1.7163 -5.8101 1.4269 22 6 2.3823 -3.2367 1.2791 23 1 -0.3633 0.0062 1.0277 24 1 -0.3633 0.8869 -0.5191 25 1 -0.3635 -0.8931 -0.5084 26 1 6.5299 3.2209 -0.0223 27 1 1.8764 -2.9394 -2.1161 28 1 3.4765 -3.0489 -1.3298 29 1 2.8383 -5.3654 -1.6295 30 1 1.1439 -5.0439 -1.1381 31 1 3.3183 -2.7819 1.6036 32 1 1.6414 -3.1871 2.0770 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260342095.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:40 Heat of formation + Delta-G solvation = -78.991654 kcal Electronic energy + Delta-G solvation = -18945.799668 eV Core-core repulsion = 15806.301283 eV Total energy + Delta-G solvation = -3139.498384 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.071 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.62413 -37.01684 -36.81607 -35.91103 -34.00312 -32.91091 -31.52960 -29.72695 -28.05909 -25.67811 -23.60327 -21.66414 -20.44640 -19.68118 -18.77055 -18.37912 -16.71263 -16.39340 -15.62382 -15.40350 -15.29951 -14.45720 -14.15456 -13.99856 -13.67142 -13.24470 -13.01897 -12.53667 -12.35877 -12.19698 -12.11911 -12.04825 -12.01180 -11.91456 -11.59317 -11.11365 -10.83694 -10.62325 -10.29793 -10.19626 -9.96155 -9.71836 -9.31274 -8.85616 -7.73933 -7.54863 -4.92651 0.12206 2.50916 2.68273 3.10236 3.21375 3.37297 3.63096 3.85275 3.90692 4.05536 4.41187 4.50805 4.67992 4.79491 4.89426 5.01064 5.08096 5.28473 5.50260 5.63948 5.68699 5.73446 5.94599 6.00198 6.10323 6.14627 6.30395 6.58049 7.28194 7.30728 7.47611 7.93077 8.12730 8.33128 9.40783 9.78709 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.032627 B = 0.005446 C = 0.004990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.975082 B = 5139.870625 C = 5609.459087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 C -0.182 4.182 3 O -0.235 6.235 4 C 0.332 3.668 5 C -0.474 4.474 6 H 0.108 0.892 7 C 0.048 3.952 8 N -0.796 5.796 9 Si 1.074 2.926 10 H -0.281 1.281 11 H -0.272 1.272 12 H -0.264 1.264 13 N -0.601 5.601 14 C 0.038 3.962 15 C 0.009 3.991 16 H 0.095 0.905 17 C -0.110 4.110 18 C -0.587 4.587 19 S 2.383 3.617 20 O -0.938 6.938 21 O -0.950 6.950 22 C -0.575 4.575 23 H 0.058 0.942 24 H 0.060 0.940 25 H 0.069 0.931 26 H 0.291 0.709 27 H 0.094 0.906 28 H 0.098 0.902 29 H 0.135 0.865 30 H 0.134 0.866 31 H 0.148 0.852 32 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.499 -9.120 -1.524 13.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.236 4.236 3 O -0.133 6.133 4 C 0.150 3.850 5 C -0.510 4.510 6 H 0.126 0.874 7 C -0.175 4.175 8 N -0.421 5.421 9 Si 0.900 3.100 10 H -0.208 1.208 11 H -0.198 1.198 12 H -0.189 1.189 13 N -0.333 5.333 14 C -0.088 4.088 15 C -0.011 4.011 16 H 0.113 0.887 17 C -0.149 4.149 18 C -0.716 4.716 19 S 2.568 3.432 20 O -0.935 6.935 21 O -0.947 6.947 22 C -0.706 4.706 23 H 0.076 0.924 24 H 0.079 0.921 25 H 0.088 0.912 26 H 0.102 0.898 27 H 0.113 0.887 28 H 0.117 0.883 29 H 0.153 0.847 30 H 0.153 0.847 31 H 0.166 0.834 32 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.297 -8.855 -0.862 12.868 hybrid contribution 0.178 -0.334 -0.585 0.697 sum -9.118 -9.190 -1.447 13.027 Atomic orbital electron populations 1.19818 0.86980 1.01984 1.01347 1.22376 0.93172 0.84883 1.23166 1.84268 1.18368 1.34599 1.76061 1.22278 0.81870 0.88593 0.92290 1.19561 0.91549 0.92273 1.47594 0.87412 1.27307 1.06518 0.93601 0.90090 1.70500 1.00818 1.39826 1.30966 0.83354 0.71817 0.75232 0.79578 1.20770 1.19759 1.18948 1.70738 1.19454 1.08865 1.34270 1.20518 0.90663 0.92973 1.04612 1.19736 0.99996 0.90855 0.90545 0.88715 1.22242 1.04922 0.88422 0.99327 1.30582 1.11883 1.05211 1.23964 1.09163 0.75621 0.78820 0.79609 1.93615 1.30971 1.83321 1.85596 1.93578 1.63758 1.64456 1.72904 1.30531 1.12364 1.21089 1.06570 0.92372 0.92132 0.91199 0.89757 0.88710 0.88312 0.84680 0.84737 0.83433 0.84683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.67 10.09 36.00 0.36 -0.31 16 2 C -0.18 -3.81 7.42 -35.13 -0.26 -4.07 16 3 O -0.24 -5.78 6.15 3.07 0.02 -5.76 16 4 C 0.33 8.69 7.38 -16.55 -0.12 8.56 16 5 C -0.47 -12.70 9.89 -38.21 -0.38 -13.07 16 6 H 0.11 2.96 8.06 -52.49 -0.42 2.54 16 7 C 0.05 1.23 5.52 -17.28 -0.10 1.14 16 8 N -0.80 -20.48 13.64 55.57 0.76 -19.72 16 9 Si 1.07 23.98 25.93 -169.99 -4.41 19.57 16 10 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 11 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 12 H -0.26 -5.81 6.80 56.52 0.38 -5.43 16 13 N -0.60 -14.73 11.12 -9.64 -0.11 -14.84 16 14 C 0.04 0.77 5.53 -82.88 -0.46 0.31 16 15 C 0.01 0.13 2.97 -90.71 -0.27 -0.14 16 16 H 0.09 1.08 6.83 -51.93 -0.35 0.73 16 17 C -0.11 -1.42 5.77 -25.24 -0.15 -1.56 16 18 C -0.59 -5.74 7.31 38.20 0.28 -5.46 16 19 S 2.38 30.19 6.10 -107.50 -0.66 29.53 16 20 O -0.94 -15.62 18.15 -57.73 -1.05 -16.67 16 21 O -0.95 -14.08 18.15 -57.73 -1.05 -15.12 16 22 C -0.58 -7.84 6.73 37.77 0.25 -7.59 16 23 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 25 H 0.07 0.84 7.17 -51.93 -0.37 0.46 16 26 H 0.29 7.20 8.72 -40.82 -0.36 6.85 16 27 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.10 1.48 8.05 -51.93 -0.42 1.06 16 29 H 0.13 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.13 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.15 2.37 7.74 -51.93 -0.40 1.97 16 32 H 0.13 1.53 8.14 -51.93 -0.42 1.10 16 LS Contribution 284.30 15.07 4.28 4.28 Total: -1.00 -33.37 284.30 -6.71 -40.08 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -3.68 Total: 0.83 kcal Atomic # 6 Polarization: -21.35 SS G_CDS: -0.83 Total: -22.18 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: 0.65 Total: -34.56 kcal Atomic # 8 Polarization: -35.48 SS G_CDS: -2.08 Total: -37.55 kcal Atomic # 14 Polarization: 23.98 SS G_CDS: -4.41 Total: 19.57 kcal Atomic # 16 Polarization: 30.19 SS G_CDS: -0.66 Total: 29.53 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -33.37 -6.71 -40.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260342095.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.911 kcal (2) G-P(sol) polarization free energy of solvation -33.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds