Wall clock time and date at job start Mon Mar 30 2020 04:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.34597 * 126.32160 * 2 1 4 4 C 1.34958 * 107.60486 * 180.12663 * 3 2 1 5 5 C 1.39797 * 125.79490 * 179.84043 * 4 3 2 6 6 H 1.08000 * 119.99947 * 185.93247 * 5 4 3 7 7 C 1.40338 * 120.00179 * 5.93537 * 5 4 3 8 8 N 1.30625 * 120.00066 * 183.59552 * 7 5 4 9 9 Si 1.86797 * 119.99960 * 3.59159 * 7 5 4 10 10 H 1.48505 * 109.47007 * 180.02562 * 9 7 5 11 11 H 1.48496 * 109.47219 * 60.00679 * 9 7 5 12 12 H 1.48502 * 109.47259 * 299.99899 * 9 7 5 13 13 N 1.32810 * 108.40180 * 359.57585 * 4 3 2 14 14 C 1.33062 * 108.65235 * 0.26669 * 13 4 3 15 15 C 1.50698 * 126.01152 * 179.97438 * 14 13 4 16 16 H 1.09005 * 109.64451 * 180.71899 * 15 14 13 17 17 C 1.53869 * 109.64843 * 301.15344 * 15 14 13 18 18 C 1.54973 * 106.66353 * 167.14840 * 17 15 14 19 19 S 1.83286 * 102.47959 * 317.38427 * 18 17 15 20 20 O 1.42098 * 109.35500 * 269.89839 * 19 18 17 21 21 O 1.42101 * 109.47296 * 136.72782 * 19 18 17 22 22 C 1.54173 * 109.64329 * 60.29583 * 15 14 13 23 23 H 1.09006 * 109.46701 * 270.34663 * 1 2 3 24 24 H 1.08998 * 109.47173 * 30.34279 * 1 2 3 25 25 H 1.09002 * 109.47768 * 150.34945 * 1 2 3 26 26 H 0.97006 * 119.99641 * 354.80206 * 8 7 5 27 27 H 1.09000 * 110.02884 * 286.32443 * 17 15 14 28 28 H 1.09001 * 110.02993 * 47.73839 * 17 15 14 29 29 H 1.09002 * 110.76322 * 199.17465 * 18 17 15 30 30 H 1.09003 * 111.06888 * 75.73457 * 18 17 15 31 31 H 1.08998 * 110.31946 * 331.13428 * 22 15 14 32 32 H 1.08997 * 110.31826 * 93.24055 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.3042 1.0845 0.0000 4 6 3.5824 0.6514 -0.0028 5 6 4.7207 1.4630 -0.0070 6 1 5.7002 1.0188 -0.1057 7 6 4.5906 2.8548 0.1172 8 7 5.6475 3.6187 0.0429 9 14 2.9060 3.6149 0.3886 10 1 3.0387 5.0908 0.4855 11 1 2.3214 3.0864 1.6472 12 1 2.0186 3.2720 -0.7517 13 7 3.5751 -0.6767 0.0048 14 6 2.3121 -1.0953 0.0065 15 6 1.8546 -2.5311 0.0140 16 1 0.7653 -2.5687 0.0009 17 6 2.4122 -3.2583 -1.2221 18 6 2.1886 -4.7733 -0.9849 19 16 2.6611 -4.9728 0.7747 20 8 4.0480 -5.2707 0.8591 21 8 1.7163 -5.8101 1.4269 22 6 2.3823 -3.2367 1.2791 23 1 -0.3633 0.0062 1.0277 24 1 -0.3633 0.8869 -0.5191 25 1 -0.3635 -0.8931 -0.5084 26 1 6.5299 3.2209 -0.0223 27 1 1.8764 -2.9394 -2.1161 28 1 3.4765 -3.0489 -1.3298 29 1 2.8383 -5.3654 -1.6295 30 1 1.1439 -5.0439 -1.1381 31 1 3.3183 -2.7819 1.6036 32 1 1.6414 -3.1871 2.0770 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260342095.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:40 Heat of formation + Delta-G solvation = -107.110625 kcal Electronic energy + Delta-G solvation = -18947.018998 eV Core-core repulsion = 15806.301283 eV Total energy + Delta-G solvation = -3140.717715 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.071 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.42354 -38.15881 -37.99663 -37.04601 -35.91877 -34.60346 -33.01845 -30.78245 -29.78674 -26.92013 -24.98442 -23.05286 -22.25301 -21.30655 -20.13190 -19.80472 -17.76793 -17.62881 -17.16097 -17.02788 -16.61003 -15.91963 -15.68289 -15.17850 -14.98295 -14.75050 -14.63059 -13.84798 -13.72629 -13.34575 -13.30153 -13.19590 -13.11314 -12.99957 -12.95637 -12.82657 -12.06755 -11.97502 -11.84890 -11.75612 -11.47429 -11.24511 -11.07915 -10.64947 -9.62632 -9.40492 -6.86824 -0.88556 0.84325 1.31342 1.45013 1.60512 1.62578 2.05382 2.10755 2.65757 2.73161 3.00169 3.05065 3.42617 3.60791 3.82930 3.84483 4.03669 4.14101 4.40283 4.52980 4.63810 4.67646 4.82418 4.83281 4.87355 5.06646 5.08377 5.20601 5.27106 5.66714 5.75520 5.92708 6.25795 6.38310 7.59094 7.80834 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.032627 B = 0.005446 C = 0.004990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.975082 B = 5139.870625 C = 5609.459087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 C -0.184 4.184 3 O -0.246 6.246 4 C 0.307 3.693 5 C -0.508 4.508 6 H 0.080 0.920 7 C 0.021 3.979 8 N -0.815 5.815 9 Si 1.110 2.890 10 H -0.263 1.263 11 H -0.273 1.273 12 H -0.259 1.259 13 N -0.618 5.618 14 C 0.020 3.980 15 C 0.005 3.995 16 H 0.141 0.859 17 C -0.115 4.115 18 C -0.549 4.549 19 S 2.397 3.603 20 O -0.987 6.987 21 O -0.969 6.969 22 C -0.580 4.580 23 H 0.078 0.922 24 H 0.067 0.933 25 H 0.111 0.889 26 H 0.286 0.714 27 H 0.117 0.883 28 H 0.066 0.934 29 H 0.157 0.843 30 H 0.178 0.822 31 H 0.114 0.886 32 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.333 -10.466 -2.394 17.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.237 4.237 3 O -0.143 6.143 4 C 0.122 3.878 5 C -0.544 4.544 6 H 0.098 0.902 7 C -0.197 4.197 8 N -0.440 5.440 9 Si 0.931 3.069 10 H -0.189 1.189 11 H -0.199 1.199 12 H -0.185 1.185 13 N -0.352 5.352 14 C -0.104 4.104 15 C -0.015 4.015 16 H 0.159 0.841 17 C -0.154 4.154 18 C -0.682 4.682 19 S 2.585 3.415 20 O -0.984 6.984 21 O -0.966 6.966 22 C -0.710 4.710 23 H 0.097 0.903 24 H 0.086 0.914 25 H 0.129 0.871 26 H 0.097 0.903 27 H 0.136 0.864 28 H 0.085 0.915 29 H 0.175 0.825 30 H 0.196 0.804 31 H 0.132 0.868 32 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -13.126 -10.212 -1.698 16.718 hybrid contribution 1.269 -0.074 -0.351 1.319 sum -11.857 -10.286 -2.049 15.830 Atomic orbital electron populations 1.20168 0.82356 1.04443 1.03396 1.23744 0.95708 0.84011 1.20214 1.84266 1.18132 1.36365 1.75542 1.22277 0.82458 0.89226 0.93865 1.19448 0.91073 0.93339 1.50515 0.90208 1.28275 1.08638 0.93514 0.89287 1.70538 1.00859 1.39760 1.32832 0.82945 0.68926 0.75636 0.79394 1.18877 1.19853 1.18499 1.70720 1.22419 1.08397 1.33667 1.21355 0.88921 0.96054 1.04075 1.20083 1.02626 0.87338 0.91434 0.84112 1.22234 1.03324 0.90339 0.99473 1.30417 1.15009 1.03140 1.19646 1.08644 0.74098 0.77620 0.81111 1.93553 1.33966 1.83864 1.87046 1.93548 1.63660 1.64707 1.74667 1.30526 1.11441 1.21672 1.07362 0.90327 0.91419 0.87079 0.90321 0.86429 0.91472 0.82511 0.80412 0.86790 0.82384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.18 10.09 71.23 0.72 -0.46 16 2 C -0.18 -7.23 7.42 25.15 0.19 -7.05 16 3 O -0.25 -11.93 6.15 -11.92 -0.07 -12.01 16 4 C 0.31 16.49 7.38 84.92 0.63 17.11 16 5 C -0.51 -28.68 9.89 23.16 0.23 -28.45 16 6 H 0.08 4.77 8.06 -2.91 -0.02 4.75 16 7 C 0.02 1.13 5.52 85.38 0.47 1.61 16 8 N -0.81 -43.48 13.64 21.89 0.30 -43.18 16 9 Si 1.11 48.64 25.93 68.60 1.78 50.42 16 10 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 11 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 12 H -0.26 -11.04 6.80 99.48 0.68 -10.36 16 13 N -0.62 -30.92 11.12 -297.40 -3.31 -34.22 16 14 C 0.02 0.77 5.53 41.84 0.23 1.00 16 15 C 0.00 0.13 2.97 -10.85 -0.03 0.10 16 16 H 0.14 2.32 6.83 -2.38 -0.02 2.30 16 17 C -0.11 -2.54 5.77 31.56 0.18 -2.36 16 18 C -0.55 -8.11 7.31 72.66 0.53 -7.58 16 19 S 2.40 55.96 6.10 -56.49 -0.34 55.62 16 20 O -0.99 -32.93 18.15 -127.47 -2.31 -35.25 16 21 O -0.97 -26.20 18.15 -127.47 -2.31 -28.52 16 22 C -0.58 -14.85 6.73 72.38 0.49 -14.37 16 23 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 24 H 0.07 1.64 8.14 -2.39 -0.02 1.63 16 25 H 0.11 1.89 7.17 -2.39 -0.02 1.87 16 26 H 0.29 14.98 8.72 -92.70 -0.81 14.18 16 27 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.07 1.94 8.05 -2.39 -0.02 1.92 16 29 H 0.16 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.18 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.11 3.77 7.74 -2.39 -0.02 3.75 16 32 H 0.16 3.16 8.14 -2.39 -0.02 3.14 16 Total: -1.00 -76.99 284.30 -1.57 -78.56 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: 1.07 Total: 9.01 kcal Atomic # 6 Polarization: -44.08 SS G_CDS: 3.63 Total: -40.45 kcal Atomic # 7 Polarization: -74.39 SS G_CDS: -3.01 Total: -77.40 kcal Atomic # 8 Polarization: -71.07 SS G_CDS: -4.70 Total: -75.77 kcal Atomic # 14 Polarization: 48.64 SS G_CDS: 1.78 Total: 50.42 kcal Atomic # 16 Polarization: 55.96 SS G_CDS: -0.34 Total: 55.62 kcal Total: -76.99 -1.57 -78.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260342095.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.546 kcal (2) G-P(sol) polarization free energy of solvation -76.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds