Wall clock time and date at job start Mon Mar 30 2020 04:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.34603 * 126.32248 * 2 1 4 4 C 1.34940 * 107.60632 * 180.29651 * 3 2 1 5 5 C 1.39801 * 125.79576 * 179.71395 * 4 3 2 6 6 H 1.08005 * 119.99836 * 180.02562 * 5 4 3 7 7 C 1.40336 * 120.00340 * 0.02968 * 5 4 3 8 8 N 1.30630 * 119.99578 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00161 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47538 * 89.99744 * 9 7 5 11 11 H 1.48500 * 109.46924 * 210.00125 * 9 7 5 12 12 H 1.48502 * 109.47228 * 329.99565 * 9 7 5 13 13 N 1.32812 * 108.40523 * 359.73621 * 4 3 2 14 14 C 1.33064 * 108.65011 * 0.02562 * 13 4 3 15 15 C 1.50696 * 126.00967 * 179.97438 * 14 13 4 16 16 H 1.09001 * 110.35978 * 162.85341 * 15 14 13 17 17 C 1.54163 * 110.32176 * 285.02233 * 15 14 13 18 18 C 1.53879 * 108.59445 * 146.87893 * 17 15 14 19 19 C 1.54976 * 106.65773 * 312.63445 * 18 17 15 20 20 S 1.82923 * 110.32098 * 40.68825 * 15 14 13 21 21 O 1.42103 * 109.34879 * 352.36720 * 20 15 14 22 22 O 1.42100 * 109.35298 * 125.57167 * 20 15 14 23 23 H 1.09008 * 109.46846 * 270.14971 * 1 2 3 24 24 H 1.09006 * 109.46997 * 30.14056 * 1 2 3 25 25 H 1.08996 * 109.47349 * 150.15089 * 1 2 3 26 26 H 0.96998 * 119.99645 * 180.02562 * 8 7 5 27 27 H 1.09002 * 109.64767 * 266.66635 * 17 15 14 28 28 H 1.09006 * 109.64463 * 27.09455 * 17 15 14 29 29 H 1.09000 * 110.02725 * 72.04717 * 18 17 15 30 30 H 1.09000 * 110.02479 * 193.46235 * 18 17 15 31 31 H 1.08999 * 110.90422 * 284.33966 * 19 18 17 32 32 H 1.09005 * 110.75495 * 160.82329 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3043 1.0845 0.0000 4 6 3.5823 0.6515 -0.0067 5 6 4.7206 1.4631 -0.0146 6 1 5.7033 1.0150 -0.0199 7 6 4.5865 2.8600 -0.0155 8 7 3.3979 3.4020 -0.0095 9 14 6.1074 3.9444 -0.0268 10 1 6.5015 4.2300 -1.4298 11 1 5.8111 5.2199 0.6736 12 1 7.2189 3.2455 0.6670 13 7 3.5752 -0.6766 -0.0049 14 6 2.3121 -1.0953 0.0022 15 6 1.8547 -2.5311 0.0059 16 1 0.8108 -2.5958 0.3128 17 6 2.0418 -3.1562 -1.3908 18 6 2.3855 -4.6463 -1.2195 19 6 3.4947 -4.7251 -0.1400 20 16 2.9072 -3.5303 1.1195 21 8 4.0013 -2.7413 1.5667 22 8 2.0866 -4.2056 2.0627 23 1 -0.3633 0.0027 1.0277 24 1 -0.3633 0.8888 -0.5160 25 1 -0.3634 -0.8913 -0.5115 26 1 3.3052 4.3675 -0.0105 27 1 1.1198 -3.0563 -1.9635 28 1 2.8541 -2.6504 -1.9129 29 1 1.5040 -5.1975 -0.8920 30 1 2.7536 -5.0551 -2.1605 31 1 4.4570 -4.4156 -0.5479 32 1 3.5558 -5.7297 0.2785 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260347030.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:33 Heat of formation + Delta-G solvation = -94.882041 kcal Electronic energy + Delta-G solvation = -19247.411904 eV Core-core repulsion = 16107.224461 eV Total energy + Delta-G solvation = -3140.187443 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.071 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.08055 -37.94868 -37.62123 -36.86430 -35.73496 -34.74481 -33.11180 -30.52747 -29.61148 -26.73511 -25.05549 -22.57418 -22.28344 -21.48389 -19.81544 -19.28322 -17.67423 -17.43056 -17.13473 -16.73730 -16.56817 -15.97585 -15.31303 -15.12704 -14.84650 -14.63709 -14.16657 -13.72975 -13.59066 -13.21137 -13.11816 -13.04238 -12.95749 -12.93541 -12.86632 -12.77134 -12.51400 -12.00193 -11.79027 -11.60714 -11.47043 -11.32184 -10.90753 -10.48686 -9.25254 -8.83920 -6.68090 -0.83289 1.06469 1.37361 1.49724 1.55793 1.72060 2.16395 2.18578 2.76850 2.82082 3.10182 3.20889 3.53171 3.62744 3.88400 3.89002 4.14283 4.24003 4.43241 4.67589 4.68622 4.72288 4.77125 4.91576 5.01617 5.04048 5.06309 5.15156 5.24980 5.81491 5.91543 6.14136 6.53560 6.62975 7.78531 8.21294 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.027222 B = 0.006140 C = 0.005602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.331159 B = 4559.249450 C = 4996.759020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 C -0.195 4.195 3 O -0.208 6.208 4 C 0.309 3.691 5 C -0.463 4.463 6 H 0.108 0.892 7 C 0.027 3.973 8 N -0.813 5.813 9 Si 1.013 2.987 10 H -0.252 1.252 11 H -0.260 1.260 12 H -0.255 1.255 13 N -0.602 5.602 14 C 0.011 3.989 15 C -0.454 4.454 16 H 0.164 0.836 17 C -0.104 4.104 18 C -0.111 4.111 19 C -0.558 4.558 20 S 2.364 3.636 21 O -0.964 6.964 22 O -0.980 6.980 23 H 0.069 0.931 24 H 0.063 0.937 25 H 0.104 0.896 26 H 0.297 0.703 27 H 0.117 0.883 28 H 0.065 0.935 29 H 0.114 0.886 30 H 0.127 0.873 31 H 0.142 0.858 32 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.092 -11.286 -5.114 13.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.252 4.252 3 O -0.100 6.100 4 C 0.124 3.876 5 C -0.498 4.498 6 H 0.126 0.874 7 C -0.191 4.191 8 N -0.441 5.441 9 Si 0.830 3.170 10 H -0.176 1.176 11 H -0.184 1.184 12 H -0.179 1.179 13 N -0.335 5.335 14 C -0.114 4.114 15 C -0.564 4.564 16 H 0.181 0.819 17 C -0.142 4.142 18 C -0.149 4.149 19 C -0.692 4.692 20 S 2.552 3.448 21 O -0.961 6.961 22 O -0.977 6.977 23 H 0.088 0.912 24 H 0.082 0.918 25 H 0.123 0.877 26 H 0.108 0.892 27 H 0.135 0.865 28 H 0.084 0.916 29 H 0.133 0.867 30 H 0.145 0.855 31 H 0.161 0.839 32 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -3.504 -11.371 -4.089 12.582 hybrid contribution -0.210 1.293 -0.412 1.373 sum -3.714 -10.078 -4.501 11.646 Atomic orbital electron populations 1.19999 0.83347 1.03763 1.02587 1.23700 0.95966 0.85163 1.20404 1.84772 1.17666 1.34378 1.73233 1.22521 0.83254 0.88247 0.93546 1.18780 0.91161 0.90903 1.48998 0.87369 1.27186 1.01927 0.99378 0.90624 1.69763 1.26435 1.14626 1.33293 0.84756 0.75763 0.76331 0.80136 1.17603 1.18439 1.17903 1.70874 1.20620 1.08854 1.33152 1.20413 0.90133 0.93780 1.07071 1.28534 1.14641 0.99417 1.13847 0.81879 1.22079 1.05267 0.94827 0.92076 1.22357 0.97194 0.94889 1.00508 1.30430 1.09590 1.15395 1.13806 1.09690 0.77084 0.78507 0.79474 1.93620 1.52424 1.69195 1.80816 1.93514 1.69831 1.74371 1.59986 0.91243 0.91818 0.87700 0.89238 0.86465 0.91644 0.86715 0.85468 0.83935 0.81708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.40 10.02 71.24 0.71 -0.69 16 2 C -0.20 -9.62 7.42 25.15 0.19 -9.43 16 3 O -0.21 -12.36 9.06 -11.80 -0.11 -12.46 16 4 C 0.31 18.89 7.66 84.92 0.65 19.54 16 5 C -0.46 -27.08 9.45 23.16 0.22 -26.86 16 6 H 0.11 6.12 7.85 -2.91 -0.02 6.09 16 7 C 0.03 1.43 5.50 85.38 0.47 1.90 16 8 N -0.81 -44.41 11.98 21.89 0.26 -44.14 16 9 Si 1.01 38.70 29.56 68.60 2.03 40.73 16 10 H -0.25 -9.00 7.11 99.48 0.71 -8.29 16 11 H -0.26 -9.25 7.11 99.48 0.71 -8.55 16 12 H -0.26 -9.60 7.11 99.48 0.71 -8.90 16 13 N -0.60 -34.13 9.72 -297.42 -2.89 -37.02 16 14 C 0.01 0.54 5.54 41.84 0.23 0.77 16 15 C -0.45 -14.96 3.46 30.24 0.10 -14.85 16 16 H 0.16 4.31 7.33 -2.39 -0.02 4.29 16 17 C -0.10 -2.46 5.94 31.28 0.19 -2.28 16 18 C -0.11 -1.72 6.46 31.57 0.20 -1.52 16 19 C -0.56 -11.43 7.31 72.66 0.53 -10.90 16 20 S 2.36 80.91 5.94 -56.49 -0.34 80.57 16 21 O -0.96 -45.76 16.09 -127.49 -2.05 -47.81 16 22 O -0.98 -36.08 18.15 -127.49 -2.31 -38.40 16 23 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 24 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 25 H 0.10 2.76 7.54 -2.39 -0.02 2.75 16 26 H 0.30 14.29 8.29 -92.71 -0.77 13.52 16 27 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.06 1.92 7.85 -2.38 -0.02 1.90 16 29 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.13 1.30 8.14 -2.39 -0.02 1.29 16 31 H 0.14 2.96 8.14 -2.39 -0.02 2.94 16 32 H 0.17 2.31 8.14 -2.38 -0.02 2.29 16 Total: -1.00 -85.13 286.43 -0.77 -85.90 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: 1.14 Total: 16.93 kcal Atomic # 6 Polarization: -47.81 SS G_CDS: 3.50 Total: -44.31 kcal Atomic # 7 Polarization: -78.53 SS G_CDS: -2.63 Total: -81.16 kcal Atomic # 8 Polarization: -94.20 SS G_CDS: -4.47 Total: -98.67 kcal Atomic # 14 Polarization: 38.70 SS G_CDS: 2.03 Total: 40.73 kcal Atomic # 16 Polarization: 80.91 SS G_CDS: -0.34 Total: 80.57 kcal Total: -85.13 -0.77 -85.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260347030.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.981 kcal (2) G-P(sol) polarization free energy of solvation -85.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds