Wall clock time and date at job start Mon Mar 30 2020 04:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 O 1.42100 * 110.54127 * 2 1 4 4 O 1.42102 * 110.54470 * 223.24422 * 2 1 3 5 5 C 1.76205 * 104.44705 * 111.62173 * 2 1 3 6 6 C 1.38282 * 119.94528 * 90.00044 * 5 2 1 7 7 C 1.38123 * 120.06094 * 180.02562 * 6 5 2 8 8 C 1.38752 * 119.93841 * 359.97438 * 7 6 5 9 9 O 1.35901 * 120.05386 * 180.02562 * 8 7 6 10 10 C 1.38706 * 119.89239 * 359.97438 * 8 7 6 11 11 C 1.50700 * 120.03130 * 179.97438 * 10 8 7 12 12 H 1.09004 * 109.47210 * 325.00368 * 11 10 8 13 13 N 1.46899 * 109.47483 * 205.00037 * 11 10 8 14 14 C 1.50702 * 109.46869 * 85.00075 * 11 10 8 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 11 10 16 16 C 1.37884 * 119.99942 * 179.72213 * 14 11 10 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 11 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 11 19 19 H 1.48496 * 109.47341 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46983 * 120.00379 * 18 16 14 21 21 H 1.48503 * 109.47491 * 240.00192 * 18 16 14 22 22 C 1.38167 * 119.94634 * 0.25699 * 10 8 7 23 23 H 1.09003 * 109.47547 * 308.38159 * 1 2 3 24 24 H 1.09004 * 109.47164 * 68.37750 * 1 2 3 25 25 H 1.09000 * 109.47245 * 188.37401 * 1 2 3 26 26 H 1.07999 * 119.97237 * 0.02562 * 6 5 2 27 27 H 1.07990 * 120.03119 * 179.97438 * 7 6 5 28 28 H 0.96708 * 114.00091 * 269.97555 * 9 8 7 29 29 H 1.00902 * 111.00292 * 176.04974 * 13 11 10 30 30 H 1.00903 * 111.00048 * 300.00270 * 13 11 10 31 31 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 32 32 H 1.07997 * 119.97696 * 179.74707 * 22 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.3125 1.3307 0.0000 4 8 2.3126 -0.9693 -0.9116 5 6 2.2535 -0.6287 1.5863 6 6 2.4258 -1.9890 1.7662 7 6 2.7698 -2.4845 3.0087 8 6 2.9432 -1.6159 4.0768 9 8 3.2823 -2.1009 5.3002 10 6 2.7709 -0.2519 3.8936 11 6 2.9579 0.6942 5.0516 12 1 2.6131 0.2177 5.9694 13 7 2.1816 1.9185 4.8141 14 6 4.4179 1.0431 5.1846 15 1 5.1383 0.6222 4.4988 16 6 4.8332 1.9045 6.1778 17 7 3.9559 2.4174 7.0126 18 14 6.6419 2.3429 6.3378 19 1 7.4169 1.6393 5.2845 20 1 6.8115 3.8098 6.1799 21 1 7.1353 1.9288 7.6759 22 6 2.4221 0.2383 2.6498 23 1 -0.3634 0.6381 0.8056 24 1 -0.3634 0.3787 -0.9554 25 1 -0.3634 -1.0167 0.1497 26 1 2.2911 -2.6645 0.9344 27 1 2.9038 -3.5468 3.1487 28 1 2.5249 -2.3221 5.8594 29 1 2.2386 2.5421 5.6052 30 1 2.4825 2.3790 3.9682 31 1 4.2481 3.0231 7.7116 32 1 2.2838 1.2999 2.5076 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260503953.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:06 Heat of formation + Delta-G solvation = -114.746847 kcal Electronic energy + Delta-G solvation = -18904.154984 eV Core-core repulsion = 15763.106138 eV Total energy + Delta-G solvation = -3141.048846 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.071 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.88088 -38.06750 -37.68208 -36.90531 -36.63030 -33.65641 -31.28296 -30.83595 -30.13453 -28.03205 -25.02503 -23.87862 -22.03545 -19.81969 -19.38805 -18.69703 -18.32530 -17.31447 -17.09254 -16.72693 -16.33731 -16.27771 -15.66398 -15.08842 -14.84693 -14.30078 -14.01620 -13.86820 -13.79136 -13.55048 -13.20264 -13.17277 -13.06867 -12.94061 -12.85478 -12.76917 -12.27651 -12.01369 -11.90554 -11.49194 -11.18820 -10.76742 -9.95325 -9.70734 -9.26638 -8.18099 -6.41029 -0.76226 -0.12238 0.42314 1.30562 1.33945 1.44949 1.98976 2.30297 2.48968 2.99956 3.11737 3.27518 3.30784 3.92686 3.98318 4.18262 4.20023 4.27499 4.60472 4.70215 4.77138 4.95499 5.02519 5.11539 5.17700 5.27953 5.59055 5.74864 5.84717 6.02041 6.57057 6.83803 6.85799 7.03711 7.33421 8.77096 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.022903 B = 0.006101 C = 0.005558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.254892 B = 4588.252301 C = 5036.982973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.620 4.620 2 S 2.509 3.491 3 O -0.983 6.983 4 O -0.972 6.972 5 C -0.674 4.674 6 C -0.028 4.028 7 C -0.167 4.167 8 C 0.142 3.858 9 O -0.502 6.502 10 C -0.112 4.112 11 C 0.252 3.748 12 H 0.025 0.975 13 N -0.842 5.842 14 C -0.554 4.554 15 H 0.033 0.967 16 C 0.027 3.973 17 N -0.912 5.912 18 Si 0.953 3.047 19 H -0.281 1.281 20 H -0.274 1.274 21 H -0.275 1.275 22 C -0.018 4.018 23 H 0.147 0.853 24 H 0.158 0.842 25 H 0.160 0.840 26 H 0.171 0.829 27 H 0.161 0.839 28 H 0.406 0.594 29 H 0.348 0.652 30 H 0.317 0.683 31 H 0.269 0.731 32 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.289 -7.970 -10.801 16.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.774 4.774 2 S 2.693 3.307 3 O -0.981 6.981 4 O -0.969 6.969 5 C -0.759 4.759 6 C -0.047 4.047 7 C -0.186 4.186 8 C 0.097 3.903 9 O -0.315 6.315 10 C -0.114 4.114 11 C 0.142 3.858 12 H 0.043 0.957 13 N -0.371 5.371 14 C -0.593 4.593 15 H 0.051 0.949 16 C -0.174 4.174 17 N -0.552 5.552 18 Si 0.779 3.221 19 H -0.206 1.206 20 H -0.199 1.199 21 H -0.201 1.201 22 C -0.037 4.037 23 H 0.165 0.835 24 H 0.176 0.824 25 H 0.178 0.822 26 H 0.189 0.811 27 H 0.178 0.822 28 H 0.265 0.735 29 H 0.163 0.837 30 H 0.128 0.872 31 H 0.078 0.922 32 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.778 -8.013 -11.480 17.076 hybrid contribution 1.390 0.613 1.718 2.293 sum -8.388 -7.399 -9.762 14.846 Atomic orbital electron populations 1.30001 1.18930 1.14550 1.13962 1.04778 0.80281 0.72947 0.72739 1.93536 1.79963 1.38355 1.86232 1.93512 1.79862 1.62087 1.61426 1.30679 1.20315 1.03161 1.21778 1.21035 0.93074 0.93121 0.97475 1.21709 1.03163 1.01042 0.92651 1.18851 0.93971 0.90760 0.86714 1.84794 1.36671 1.84789 1.25243 1.20867 0.98545 0.94832 0.97166 1.17591 0.90224 0.87727 0.90245 0.95716 1.59574 1.58655 1.10595 1.08310 1.21937 0.94662 1.27828 1.14911 0.94855 1.25618 1.01546 0.95587 0.94629 1.69803 1.34948 1.32105 1.18298 0.85594 0.80632 0.78070 0.77835 1.20584 1.19924 1.20068 1.20653 0.92809 0.99708 0.90532 0.83487 0.82373 0.82213 0.81125 0.82182 0.73513 0.83669 0.87234 0.92166 0.84696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.62 -6.88 10.79 113.37 1.22 -5.65 16 2 S 2.51 59.60 5.80 -56.49 -0.33 59.27 16 3 O -0.98 -32.33 17.13 -127.65 -2.19 -34.51 16 4 O -0.97 -27.12 17.12 -127.65 -2.19 -29.31 16 5 C -0.67 -20.20 5.66 22.28 0.13 -20.07 16 6 C -0.03 -0.76 9.46 22.25 0.21 -0.55 16 7 C -0.17 -4.89 9.99 22.37 0.22 -4.66 16 8 C 0.14 5.35 6.68 22.50 0.15 5.50 16 9 O -0.50 -18.44 12.64 -92.44 -1.17 -19.61 16 10 C -0.11 -4.81 5.01 -19.77 -0.10 -4.91 16 11 C 0.25 12.68 2.67 43.42 0.12 12.79 16 12 H 0.02 1.36 7.69 -2.38 -0.02 1.34 16 13 N -0.84 -39.81 8.78 -174.95 -1.54 -41.35 16 14 C -0.55 -31.17 8.71 25.60 0.22 -30.94 16 15 H 0.03 1.97 7.74 -2.91 -0.02 1.95 16 16 C 0.03 1.47 5.38 84.66 0.46 1.92 16 17 N -0.91 -50.55 11.53 21.45 0.25 -50.30 16 18 Si 0.95 44.60 29.54 68.60 2.03 46.63 16 19 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 20 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 21 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 22 C -0.02 -0.67 8.69 22.26 0.19 -0.48 16 23 H 0.15 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.16 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.16 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.17 3.33 7.57 -2.91 -0.02 3.31 16 27 H 0.16 3.60 8.06 -2.92 -0.02 3.57 16 28 H 0.41 10.68 9.06 -74.05 -0.67 10.01 16 29 H 0.35 17.69 7.07 -89.69 -0.63 17.05 16 30 H 0.32 14.50 7.21 -89.69 -0.65 13.86 16 31 H 0.27 14.11 8.31 -92.70 -0.77 13.34 16 32 H 0.14 5.17 5.80 -2.91 -0.02 5.15 16 Total: -1.00 -76.37 289.82 -3.07 -79.44 By element: Atomic # 1 Polarization: 37.57 SS G_CDS: -0.76 Total: 36.80 kcal Atomic # 6 Polarization: -49.89 SS G_CDS: 2.82 Total: -47.07 kcal Atomic # 7 Polarization: -90.36 SS G_CDS: -1.29 Total: -91.65 kcal Atomic # 8 Polarization: -77.89 SS G_CDS: -5.54 Total: -83.43 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Atomic # 16 Polarization: 59.60 SS G_CDS: -0.33 Total: 59.27 kcal Total: -76.37 -3.07 -79.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260503953.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.311 kcal (2) G-P(sol) polarization free energy of solvation -76.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds