Wall clock time and date at job start Mon Mar 30 2020 04:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 108.78884 * 2 1 4 4 N 1.30799 * 125.15502 * 301.41133 * 3 2 1 5 5 C 1.33322 * 109.25315 * 180.02562 * 4 3 2 6 6 C 1.39422 * 107.08662 * 359.97438 * 5 4 3 7 7 C 1.39844 * 126.87622 * 180.02562 * 6 5 4 8 8 H 1.07994 * 119.99897 * 179.97438 * 7 6 5 9 9 C 1.40164 * 120.00007 * 359.97438 * 7 6 5 10 10 N 1.30799 * 120.00070 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00314 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.46756 * 89.99675 * 11 9 7 13 13 H 1.48494 * 109.47581 * 210.00034 * 11 9 7 14 14 H 1.48502 * 109.46863 * 330.00393 * 11 9 7 15 15 O 1.34014 * 125.14977 * 121.10339 * 3 2 1 16 16 C 1.52975 * 108.93075 * 118.62251 * 2 1 3 17 17 C 1.55804 * 108.74265 * 150.65227 * 16 2 1 18 18 S 1.83848 * 100.91247 * 318.19262 * 17 16 2 19 19 O 1.42105 * 109.61447 * 282.74995 * 18 17 16 20 20 O 1.42096 * 109.61243 * 148.97938 * 18 17 16 21 21 C 1.53619 * 108.92901 * 241.38240 * 2 1 3 22 22 H 1.08994 * 109.47311 * 178.61660 * 1 2 3 23 23 H 1.08999 * 109.46869 * 298.62231 * 1 2 3 24 24 H 1.09000 * 109.46847 * 58.61181 * 1 2 3 25 25 H 1.08001 * 126.45792 * 180.02562 * 5 4 3 26 26 H 0.97002 * 120.00155 * 179.97438 * 10 9 7 27 27 H 1.08999 * 109.65128 * 270.50360 * 16 2 1 28 28 H 1.08998 * 109.65171 * 30.94596 * 16 2 1 29 29 H 1.09003 * 111.34242 * 200.25232 * 17 16 2 30 30 H 1.08999 * 111.07812 * 76.01923 * 17 16 2 31 31 H 1.09001 * 110.27102 * 117.92975 * 21 2 1 32 32 H 1.09010 * 110.27006 * 355.86903 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0154 1.4267 0.0000 4 7 1.7303 2.3192 -0.9127 5 6 2.3240 3.4716 -0.6012 6 6 3.0209 3.2650 0.5885 7 6 3.7892 4.2033 1.2849 8 1 4.2844 3.9216 2.2023 9 6 3.9164 5.5093 0.7921 10 7 3.3170 5.8502 -0.3193 11 14 4.9421 6.7629 1.7226 12 1 6.3457 6.7098 1.2406 13 1 4.3908 8.1224 1.4925 14 1 4.9053 6.4529 3.1744 15 8 2.7998 1.9748 0.9382 16 6 2.0263 -0.6932 1.2702 17 6 3.4052 -1.3549 0.9732 18 16 3.0985 -2.0652 -0.6945 19 8 2.3287 -3.2535 -0.5727 20 8 4.3086 -2.0739 -1.4392 21 6 2.0284 -0.6960 -1.2756 22 1 -0.3633 -1.0273 -0.0248 23 1 -0.3633 0.4923 0.9021 24 1 -0.3633 0.5352 -0.8773 25 1 2.2738 4.3920 -1.1640 26 1 3.4048 6.7541 -0.6602 27 1 2.1367 0.0404 2.0688 28 1 1.3125 -1.4594 1.5724 29 1 3.6337 -2.1376 1.6967 30 1 4.1993 -0.6089 0.9415 31 1 2.6039 0.0004 -1.8855 32 1 1.1861 -1.0902 -1.8443 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260533464.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:26 Heat of formation + Delta-G solvation = -67.079494 kcal Electronic energy + Delta-G solvation = -19158.969796 eV Core-core repulsion = 16019.987961 eV Total energy + Delta-G solvation = -3138.981834 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.071 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.23566 -37.43247 -36.77306 -35.85219 -34.12703 -32.93160 -30.69832 -28.96976 -27.64088 -25.37575 -23.97742 -21.46332 -20.75123 -18.88843 -18.70754 -17.76471 -16.62007 -16.26527 -15.59171 -15.56930 -14.95024 -14.86340 -13.99504 -13.71221 -13.62472 -13.21321 -12.77484 -12.36637 -12.16573 -12.04716 -11.92457 -11.82000 -11.67862 -11.49479 -11.40220 -11.11508 -10.83557 -10.73479 -10.43552 -10.38185 -10.07358 -9.73479 -9.55490 -8.81607 -7.43460 -7.02686 -4.67168 0.21667 2.59613 2.71024 2.91096 2.96227 3.21132 3.65253 3.70988 4.04228 4.22111 4.35340 4.58857 4.72407 4.77866 4.99457 5.05881 5.15987 5.47522 5.68275 5.74039 5.86676 5.92314 5.97681 6.12293 6.38767 6.49067 6.77339 7.07518 7.32540 7.43780 8.06562 8.22239 8.44769 8.59500 9.61387 9.92038 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.033033 B = 0.005246 C = 0.005009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.438532 B = 5336.574380 C = 5588.465282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.079 3.921 3 C 0.008 3.992 4 N -0.445 5.445 5 C -0.171 4.171 6 C 0.145 3.855 7 C -0.420 4.420 8 H 0.085 0.915 9 C 0.069 3.931 10 N -0.783 5.783 11 Si 0.940 3.060 12 H -0.265 1.265 13 H -0.273 1.273 14 H -0.260 1.260 15 O -0.239 6.239 16 C -0.117 4.117 17 C -0.571 4.571 18 S 2.372 3.628 19 O -0.942 6.942 20 O -0.944 6.944 21 C -0.565 4.565 22 H 0.062 0.938 23 H 0.062 0.938 24 H 0.073 0.927 25 H 0.193 0.807 26 H 0.287 0.713 27 H 0.107 0.893 28 H 0.091 0.909 29 H 0.134 0.866 30 H 0.139 0.861 31 H 0.146 0.854 32 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.677 -7.572 2.649 8.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.076 3.924 3 C -0.190 4.190 4 N -0.173 5.173 5 C -0.318 4.318 6 C 0.092 3.908 7 C -0.450 4.450 8 H 0.103 0.897 9 C -0.150 4.150 10 N -0.409 5.409 11 Si 0.764 3.236 12 H -0.190 1.190 13 H -0.197 1.197 14 H -0.184 1.184 15 O -0.131 6.131 16 C -0.156 4.156 17 C -0.701 4.701 18 S 2.558 3.442 19 O -0.939 6.939 20 O -0.941 6.941 21 C -0.696 4.696 22 H 0.081 0.919 23 H 0.081 0.919 24 H 0.092 0.908 25 H 0.210 0.790 26 H 0.099 0.901 27 H 0.125 0.875 28 H 0.109 0.891 29 H 0.152 0.848 30 H 0.158 0.842 31 H 0.164 0.836 32 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.783 -8.472 1.551 8.795 hybrid contribution 0.642 1.707 1.251 2.212 sum -1.141 -6.764 2.802 7.410 Atomic orbital electron populations 1.21990 0.91931 1.01717 1.03756 1.18326 0.96690 0.86924 0.90445 1.24021 1.07000 0.96506 0.91456 1.69485 1.20618 1.01284 1.25909 1.24178 1.09175 0.97158 1.01318 1.20744 0.95783 0.79592 0.94633 1.18402 1.25786 0.92717 1.08142 0.89663 1.25868 0.95291 0.98950 0.94884 1.69572 1.33357 1.20714 1.17298 0.85771 0.79510 0.78186 0.80165 1.19024 1.19728 1.18367 1.84275 1.57557 1.24884 1.46388 1.22299 0.92829 1.01259 0.99220 1.30591 1.05858 1.12110 1.21591 1.09515 0.76975 0.77908 0.79845 1.93591 1.71434 1.42730 1.86161 1.93590 1.43795 1.87511 1.69232 1.30574 1.15434 1.17022 1.06566 0.91893 0.91878 0.90821 0.79027 0.90146 0.87483 0.89081 0.84769 0.84226 0.83573 0.84324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 7.86 37.16 0.29 -1.66 16 2 C 0.08 1.28 0.85 -155.35 -0.13 1.15 16 3 C 0.01 0.19 6.06 -12.72 -0.08 0.11 16 4 N -0.44 -11.09 11.13 -10.02 -0.11 -11.20 16 5 C -0.17 -4.64 10.89 -16.46 -0.18 -4.82 16 6 C 0.15 3.90 7.08 -38.54 -0.27 3.63 16 7 C -0.42 -10.77 9.45 -38.26 -0.36 -11.13 16 8 H 0.09 2.06 7.85 -52.49 -0.41 1.65 16 9 C 0.07 1.63 5.50 -17.27 -0.09 1.54 16 10 N -0.78 -19.14 10.32 55.56 0.57 -18.57 16 11 Si 0.94 17.53 29.56 -169.99 -5.03 12.51 16 12 H -0.27 -4.88 7.11 56.52 0.40 -4.48 16 13 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 14 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 15 O -0.24 -5.86 9.57 3.09 0.03 -5.83 16 16 C -0.12 -1.60 5.15 -25.25 -0.13 -1.73 16 17 C -0.57 -7.14 7.51 38.65 0.29 -6.85 16 18 S 2.37 32.74 6.03 -107.50 -0.65 32.09 16 19 O -0.94 -14.46 18.16 -57.69 -1.05 -15.51 16 20 O -0.94 -16.41 18.16 -57.69 -1.05 -17.46 16 21 C -0.57 -8.21 6.54 37.48 0.25 -7.97 16 22 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 24 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 25 H 0.19 5.33 5.76 -52.49 -0.30 5.02 16 26 H 0.29 6.27 8.30 -40.82 -0.34 5.93 16 27 H 0.11 1.60 7.07 -51.93 -0.37 1.23 16 28 H 0.09 0.96 7.84 -51.93 -0.41 0.55 16 29 H 0.13 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.14 1.89 8.14 -51.93 -0.42 1.46 16 31 H 0.15 2.39 7.57 -51.93 -0.39 2.00 16 32 H 0.14 1.63 7.63 -51.92 -0.40 1.24 16 LS Contribution 283.85 15.07 4.28 4.28 Total: -1.00 -32.46 283.85 -6.94 -39.40 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -3.53 Total: 8.03 kcal Atomic # 6 Polarization: -27.31 SS G_CDS: -0.42 Total: -27.73 kcal Atomic # 7 Polarization: -30.23 SS G_CDS: 0.46 Total: -29.77 kcal Atomic # 8 Polarization: -36.74 SS G_CDS: -2.07 Total: -38.80 kcal Atomic # 14 Polarization: 17.53 SS G_CDS: -5.03 Total: 12.51 kcal Atomic # 16 Polarization: 32.74 SS G_CDS: -0.65 Total: 32.09 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -32.46 -6.94 -39.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260533464.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.679 kcal (2) G-P(sol) polarization free energy of solvation -32.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds