Wall clock time and date at job start Mon Mar 30 2020 04:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 108.78884 * 2 1 4 4 N 1.30799 * 125.15502 * 301.41133 * 3 2 1 5 5 C 1.33322 * 109.25315 * 180.02562 * 4 3 2 6 6 C 1.39422 * 107.08662 * 359.97438 * 5 4 3 7 7 C 1.39844 * 126.87622 * 180.02562 * 6 5 4 8 8 H 1.07994 * 119.99897 * 179.97438 * 7 6 5 9 9 C 1.40164 * 120.00007 * 359.97438 * 7 6 5 10 10 N 1.30799 * 120.00070 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00314 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.46756 * 89.99675 * 11 9 7 13 13 H 1.48494 * 109.47581 * 210.00034 * 11 9 7 14 14 H 1.48502 * 109.46863 * 330.00393 * 11 9 7 15 15 O 1.34014 * 125.14977 * 121.10339 * 3 2 1 16 16 C 1.52975 * 108.93075 * 118.62251 * 2 1 3 17 17 C 1.55804 * 108.74265 * 150.65227 * 16 2 1 18 18 S 1.83848 * 100.91247 * 318.19262 * 17 16 2 19 19 O 1.42105 * 109.61447 * 282.74995 * 18 17 16 20 20 O 1.42096 * 109.61243 * 148.97938 * 18 17 16 21 21 C 1.53619 * 108.92901 * 241.38240 * 2 1 3 22 22 H 1.08994 * 109.47311 * 178.61660 * 1 2 3 23 23 H 1.08999 * 109.46869 * 298.62231 * 1 2 3 24 24 H 1.09000 * 109.46847 * 58.61181 * 1 2 3 25 25 H 1.08001 * 126.45792 * 180.02562 * 5 4 3 26 26 H 0.97002 * 120.00155 * 179.97438 * 10 9 7 27 27 H 1.08999 * 109.65128 * 270.50360 * 16 2 1 28 28 H 1.08998 * 109.65171 * 30.94596 * 16 2 1 29 29 H 1.09003 * 111.34242 * 200.25232 * 17 16 2 30 30 H 1.08999 * 111.07812 * 76.01923 * 17 16 2 31 31 H 1.09001 * 110.27102 * 117.92975 * 21 2 1 32 32 H 1.09010 * 110.27006 * 355.86903 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0154 1.4267 0.0000 4 7 1.7303 2.3192 -0.9127 5 6 2.3240 3.4716 -0.6012 6 6 3.0209 3.2650 0.5885 7 6 3.7892 4.2033 1.2849 8 1 4.2844 3.9216 2.2023 9 6 3.9164 5.5093 0.7921 10 7 3.3170 5.8502 -0.3193 11 14 4.9421 6.7629 1.7226 12 1 6.3457 6.7098 1.2406 13 1 4.3908 8.1224 1.4925 14 1 4.9053 6.4529 3.1744 15 8 2.7998 1.9748 0.9382 16 6 2.0263 -0.6932 1.2702 17 6 3.4052 -1.3549 0.9732 18 16 3.0985 -2.0652 -0.6945 19 8 2.3287 -3.2535 -0.5727 20 8 4.3086 -2.0739 -1.4392 21 6 2.0284 -0.6960 -1.2756 22 1 -0.3633 -1.0273 -0.0248 23 1 -0.3633 0.4923 0.9021 24 1 -0.3633 0.5352 -0.8773 25 1 2.2738 4.3920 -1.1640 26 1 3.4048 6.7541 -0.6602 27 1 2.1367 0.0404 2.0688 28 1 1.3125 -1.4594 1.5724 29 1 3.6337 -2.1376 1.6967 30 1 4.1993 -0.6089 0.9415 31 1 2.6039 0.0004 -1.8855 32 1 1.1861 -1.0902 -1.8443 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260533464.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:25 Heat of formation + Delta-G solvation = -93.293063 kcal Electronic energy + Delta-G solvation = -19160.106501 eV Core-core repulsion = 16019.987961 eV Total energy + Delta-G solvation = -3140.118540 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.071 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.12542 -38.70792 -38.00378 -37.08340 -35.97251 -34.81599 -31.88848 -30.83418 -28.81140 -27.14572 -25.19577 -23.08218 -22.65763 -20.41636 -19.88084 -19.62206 -18.00577 -17.42261 -17.29550 -16.87986 -16.66152 -16.27837 -15.34118 -15.25597 -14.89554 -14.55130 -14.21084 -14.02304 -13.49949 -13.36950 -13.26782 -13.15103 -13.04017 -12.86538 -12.68769 -12.55421 -12.25833 -12.09528 -11.98293 -11.70307 -11.56269 -11.42235 -11.15944 -10.76606 -9.38731 -8.81747 -6.61843 -0.91505 1.01781 1.36708 1.48872 1.54512 1.61904 2.08476 2.34762 2.54358 2.61751 3.02439 3.07245 3.36340 3.53230 3.58635 3.82053 4.03972 4.20195 4.49348 4.64691 4.69651 4.81740 4.88918 4.91606 4.96518 5.16615 5.20429 5.32214 5.40445 5.54751 6.16050 6.31962 6.46146 6.64540 7.67060 8.15859 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.033033 B = 0.005246 C = 0.005009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.438532 B = 5336.574380 C = 5588.465282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.069 3.931 3 C 0.037 3.963 4 N -0.470 5.470 5 C -0.213 4.213 6 C 0.114 3.886 7 C -0.452 4.452 8 H 0.092 0.908 9 C 0.027 3.973 10 N -0.813 5.813 11 Si 1.019 2.981 12 H -0.258 1.258 13 H -0.261 1.261 14 H -0.253 1.253 15 O -0.245 6.245 16 C -0.120 4.120 17 C -0.560 4.560 18 S 2.403 3.597 19 O -0.949 6.949 20 O -0.983 6.983 21 C -0.570 4.570 22 H 0.107 0.893 23 H 0.060 0.940 24 H 0.057 0.943 25 H 0.177 0.823 26 H 0.297 0.703 27 H 0.095 0.905 28 H 0.135 0.865 29 H 0.174 0.826 30 H 0.127 0.873 31 H 0.123 0.877 32 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.730 -8.863 4.220 9.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.067 3.933 3 C -0.164 4.164 4 N -0.198 5.198 5 C -0.357 4.357 6 C 0.062 3.938 7 C -0.481 4.481 8 H 0.110 0.890 9 C -0.189 4.189 10 N -0.439 5.439 11 Si 0.837 3.163 12 H -0.182 1.182 13 H -0.185 1.185 14 H -0.176 1.176 15 O -0.137 6.137 16 C -0.159 4.159 17 C -0.692 4.692 18 S 2.589 3.411 19 O -0.946 6.946 20 O -0.980 6.980 21 C -0.700 4.700 22 H 0.126 0.874 23 H 0.079 0.921 24 H 0.076 0.924 25 H 0.194 0.806 26 H 0.109 0.891 27 H 0.113 0.887 28 H 0.153 0.847 29 H 0.192 0.808 30 H 0.146 0.854 31 H 0.141 0.859 32 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -1.852 -9.741 3.073 10.381 hybrid contribution 0.578 1.991 0.736 2.200 sum -1.274 -7.750 3.809 8.729 Atomic orbital electron populations 1.22042 0.90060 1.04370 1.02965 1.18834 0.98253 0.83487 0.92768 1.25507 1.03429 0.98315 0.89175 1.69462 1.21784 1.01376 1.27191 1.23995 1.11584 0.97728 1.02381 1.21132 0.96861 0.80627 0.95210 1.18849 1.26623 0.93826 1.08844 0.88961 1.27018 0.96005 1.00283 0.95554 1.69640 1.33970 1.21790 1.18516 0.84644 0.77597 0.75320 0.78755 1.18239 1.18491 1.17595 1.84292 1.58072 1.24309 1.47020 1.22408 0.94350 1.02019 0.97103 1.30581 1.05086 1.12653 1.20875 1.08642 0.75587 0.77046 0.79785 1.93575 1.71453 1.43086 1.86458 1.93541 1.45499 1.87952 1.70987 1.30580 1.16665 1.16857 1.05889 0.87416 0.92070 0.92432 0.80649 0.89119 0.88689 0.84688 0.80791 0.85432 0.85881 0.81404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.57 7.86 71.98 0.57 -3.00 16 2 C 0.07 2.12 0.85 -52.73 -0.04 2.08 16 3 C 0.04 1.68 6.06 88.26 0.54 2.21 16 4 N -0.47 -24.33 11.13 -300.13 -3.34 -27.67 16 5 C -0.21 -12.16 10.89 84.75 0.92 -11.24 16 6 C 0.11 6.40 7.08 22.94 0.16 6.56 16 7 C -0.45 -23.86 9.45 23.13 0.22 -23.64 16 8 H 0.09 4.54 7.85 -2.91 -0.02 4.52 16 9 C 0.03 1.30 5.50 85.31 0.47 1.77 16 10 N -0.81 -41.06 10.32 21.87 0.23 -40.84 16 11 Si 1.02 35.51 29.56 68.60 2.03 37.54 16 12 H -0.26 -8.65 7.11 99.48 0.71 -7.94 16 13 H -0.26 -8.52 7.11 99.48 0.71 -7.82 16 14 H -0.25 -8.44 7.11 99.48 0.71 -7.73 16 15 O -0.24 -12.25 9.57 -11.86 -0.11 -12.37 16 16 C -0.12 -2.89 5.15 31.56 0.16 -2.72 16 17 C -0.56 -12.34 7.51 72.95 0.55 -11.79 16 18 S 2.40 60.93 6.03 -56.49 -0.34 60.59 16 19 O -0.95 -25.85 18.16 -127.50 -2.32 -28.16 16 20 O -0.98 -33.32 18.16 -127.50 -2.32 -35.63 16 21 C -0.57 -15.71 6.54 72.19 0.47 -15.24 16 22 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 23 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.06 1.69 8.14 -2.39 -0.02 1.68 16 25 H 0.18 10.43 5.76 -2.91 -0.02 10.41 16 26 H 0.30 13.28 8.30 -92.71 -0.77 12.51 16 27 H 0.09 2.61 7.07 -2.39 -0.02 2.60 16 28 H 0.14 2.12 7.84 -2.39 -0.02 2.11 16 29 H 0.17 2.47 8.14 -2.39 -0.02 2.46 16 30 H 0.13 3.24 8.14 -2.39 -0.02 3.23 16 31 H 0.12 4.07 7.57 -2.39 -0.02 4.05 16 32 H 0.17 3.53 7.63 -2.38 -0.02 3.52 16 Total: -1.00 -73.50 283.85 -1.02 -74.52 By element: Atomic # 1 Polarization: 25.89 SS G_CDS: 1.14 Total: 27.04 kcal Atomic # 6 Polarization: -59.03 SS G_CDS: 4.01 Total: -55.02 kcal Atomic # 7 Polarization: -65.39 SS G_CDS: -3.12 Total: -68.51 kcal Atomic # 8 Polarization: -71.42 SS G_CDS: -4.74 Total: -76.16 kcal Atomic # 14 Polarization: 35.51 SS G_CDS: 2.03 Total: 37.54 kcal Atomic # 16 Polarization: 60.93 SS G_CDS: -0.34 Total: 60.59 kcal Total: -73.50 -1.02 -74.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260533464.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.773 kcal (2) G-P(sol) polarization free energy of solvation -73.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds