Wall clock time and date at job start Mon Mar 30 2020 04:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 O 1.42101 * 110.54006 * 2 1 4 4 O 1.42094 * 110.54699 * 223.24529 * 2 1 3 5 5 C 1.76208 * 104.45062 * 111.62353 * 2 1 3 6 6 C 1.38283 * 119.97174 * 114.97908 * 5 2 1 7 7 C 1.38246 * 120.10912 * 180.02562 * 6 5 2 8 8 C 1.38163 * 120.05539 * 359.97328 * 7 6 5 9 9 C 1.38708 * 119.94777 * 359.77250 * 8 7 6 10 10 O 1.35904 * 120.06144 * 180.25233 * 9 8 7 11 11 C 1.38124 * 119.97112 * 295.00216 * 5 2 1 12 12 C 1.50703 * 120.02663 * 359.97438 * 11 5 2 13 13 H 1.08996 * 109.47343 * 344.99823 * 12 11 5 14 14 N 1.46905 * 109.47075 * 224.99981 * 12 11 5 15 15 C 1.50697 * 109.47094 * 105.00022 * 12 11 5 16 16 H 1.08003 * 119.99947 * 0.02562 * 15 12 11 17 17 C 1.37881 * 120.00105 * 179.97438 * 15 12 11 18 18 N 1.31513 * 119.99734 * 0.02562 * 17 15 12 19 19 Si 1.86804 * 119.99920 * 180.02562 * 17 15 12 20 20 H 1.48491 * 109.47212 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47100 * 120.00498 * 19 17 15 22 22 H 1.48497 * 109.46797 * 239.99920 * 19 17 15 23 23 H 1.08996 * 109.47223 * 308.37287 * 1 2 3 24 24 H 1.08997 * 109.47535 * 68.37715 * 1 2 3 25 25 H 1.09005 * 109.46811 * 188.37802 * 1 2 3 26 26 H 1.08001 * 119.94759 * 0.04399 * 6 5 2 27 27 H 1.08000 * 119.97248 * 180.02562 * 7 6 5 28 28 H 1.08004 * 120.02657 * 180.02562 * 8 7 6 29 29 H 0.96701 * 113.99616 * 270.25345 * 10 9 8 30 30 H 1.00901 * 110.99869 * 176.04968 * 14 12 11 31 31 H 1.00896 * 110.99543 * 300.00090 * 14 12 11 32 32 H 0.97005 * 119.99709 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3125 1.3307 0.0000 4 8 2.3127 -0.9692 -0.9116 5 6 2.2537 -0.6288 1.5862 6 6 2.9159 -1.8382 1.6906 7 6 3.2618 -2.3345 2.9337 8 6 2.9469 -1.6225 4.0751 9 6 2.2873 -0.4066 3.9728 10 8 1.9810 0.2982 5.0938 11 6 1.9361 0.0866 2.7243 12 6 1.2145 1.4046 2.6098 13 1 1.2628 1.7569 1.5795 14 7 1.8507 2.3898 3.4945 15 6 -0.2266 1.2248 3.0121 16 1 -0.5841 0.2534 3.3204 17 6 -1.0886 2.3007 2.9877 18 7 -0.6532 3.4837 2.6128 19 14 -2.8748 2.0780 3.4872 20 1 -3.1105 0.6611 3.8637 21 1 -3.1778 2.9557 4.6461 22 1 -3.7560 2.4402 2.3482 23 1 -0.3633 0.6379 0.8056 24 1 -0.3634 0.3787 -0.9553 25 1 -0.3633 -1.0168 0.1497 26 1 3.1636 -2.3960 0.7996 27 1 3.7794 -3.2791 3.0127 28 1 3.2177 -2.0104 5.0460 29 1 1.1169 0.0820 5.4703 30 1 1.4258 3.2988 3.3882 31 1 1.8187 2.0859 4.4561 32 1 -1.2597 4.2405 2.5953 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260594770.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:11 Heat of formation + Delta-G solvation = -78.560386 kcal Electronic energy + Delta-G solvation = -19824.009663 eV Core-core repulsion = 16684.529980 eV Total energy + Delta-G solvation = -3139.479683 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.071 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.51961 -36.67887 -36.16781 -35.38079 -34.73220 -31.84217 -30.15843 -29.11019 -28.76979 -26.02374 -23.24597 -22.70336 -20.47479 -18.73956 -17.75961 -16.80670 -16.27011 -15.92916 -15.53020 -15.40606 -14.75682 -14.70352 -14.35381 -13.57530 -13.15985 -12.83132 -12.69925 -12.46367 -12.17103 -11.86785 -11.75681 -11.52517 -11.43674 -11.26238 -11.10706 -10.91519 -10.73076 -10.44207 -10.21761 -10.08430 -9.35731 -8.86008 -8.71614 -8.07031 -7.14595 -6.25001 -4.51103 0.66857 1.29182 1.76279 3.06008 3.16837 3.17488 3.41113 3.80615 4.12088 4.35393 4.68584 4.83004 4.94348 5.20157 5.35601 5.37746 5.51135 5.64084 5.83283 6.08206 6.29025 6.42103 6.51202 6.59214 6.73518 6.83515 7.13233 7.43224 7.52037 7.85075 8.19573 8.48143 8.96227 9.12530 9.36727 10.67252 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.017662 B = 0.009961 C = 0.007688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.917382 B = 2810.420401 C = 3641.335249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.658 4.658 2 S 2.498 3.502 3 O -0.925 6.925 4 O -0.964 6.964 5 C -0.651 4.651 6 C -0.039 4.039 7 C -0.151 4.151 8 C -0.103 4.103 9 C 0.095 3.905 10 O -0.481 6.481 11 C 0.045 3.955 12 C 0.206 3.794 13 H 0.075 0.925 14 N -0.844 5.844 15 C -0.567 4.567 16 H 0.059 0.941 17 C 0.074 3.926 18 N -0.872 5.872 19 Si 0.893 3.107 20 H -0.271 1.271 21 H -0.281 1.281 22 H -0.280 1.280 23 H 0.171 0.829 24 H 0.122 0.878 25 H 0.123 0.877 26 H 0.138 0.862 27 H 0.125 0.875 28 H 0.125 0.875 29 H 0.386 0.614 30 H 0.354 0.646 31 H 0.329 0.671 32 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.674 -8.991 0.221 9.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.809 4.809 2 S 2.679 3.321 3 O -0.922 6.922 4 O -0.961 6.961 5 C -0.739 4.739 6 C -0.058 4.058 7 C -0.170 4.170 8 C -0.121 4.121 9 C 0.049 3.951 10 O -0.290 6.290 11 C 0.043 3.957 12 C 0.095 3.905 13 H 0.093 0.907 14 N -0.381 5.381 15 C -0.607 4.607 16 H 0.077 0.923 17 C -0.132 4.132 18 N -0.509 5.509 19 Si 0.720 3.280 20 H -0.196 1.196 21 H -0.206 1.206 22 H -0.205 1.205 23 H 0.189 0.811 24 H 0.141 0.859 25 H 0.141 0.859 26 H 0.156 0.844 27 H 0.143 0.857 28 H 0.143 0.857 29 H 0.242 0.758 30 H 0.170 0.830 31 H 0.145 0.855 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.417 -8.415 -0.943 8.806 hybrid contribution -2.904 -0.556 1.660 3.391 sum -0.488 -8.971 0.716 9.013 Atomic orbital electron populations 1.30424 1.24329 1.12639 1.13475 1.05061 0.78415 0.74666 0.73943 1.93616 1.77442 1.35556 1.85610 1.93479 1.78594 1.62390 1.61674 1.30200 1.16210 1.06964 1.20515 1.20840 0.93599 0.92890 0.98464 1.20903 1.03405 1.00595 0.92121 1.21630 0.97825 0.93575 0.99099 1.18285 0.99711 0.90673 0.86400 1.84717 1.40523 1.63774 1.40025 1.20730 0.88205 0.95986 0.90786 1.18705 0.89291 0.84415 0.98086 0.90726 1.59385 1.60859 1.07085 1.10752 1.21780 0.94551 0.95978 1.48345 0.92286 1.25043 0.98982 0.95073 0.94102 1.69795 1.36008 1.00085 1.44995 0.86517 0.84314 0.78488 0.78654 1.19598 1.20630 1.20548 0.81077 0.85936 0.85853 0.84403 0.85696 0.85693 0.75841 0.82976 0.85536 0.91949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -10.65 10.47 101.05 1.06 -9.59 16 2 S 2.50 46.77 5.15 -107.50 -0.55 46.22 16 3 O -0.93 -21.08 15.54 -57.54 -0.89 -21.98 16 4 O -0.96 -18.34 16.73 -57.54 -0.96 -19.30 16 5 C -0.65 -12.61 5.58 -39.61 -0.22 -12.84 16 6 C -0.04 -0.65 9.50 -39.56 -0.38 -1.03 16 7 C -0.15 -2.27 10.04 -39.61 -0.40 -2.66 16 8 C -0.10 -1.63 9.99 -39.44 -0.39 -2.03 16 9 C 0.09 1.81 6.48 -39.22 -0.25 1.55 16 10 O -0.48 -8.64 10.21 -19.44 -0.20 -8.84 16 11 C 0.05 0.96 4.88 -104.47 -0.51 0.45 16 12 C 0.21 4.89 1.96 -70.01 -0.14 4.76 16 13 H 0.08 1.91 4.06 -51.93 -0.21 1.70 16 14 N -0.84 -20.69 9.06 -6.65 -0.06 -20.75 16 15 C -0.57 -13.37 6.42 -34.44 -0.22 -13.59 16 16 H 0.06 1.35 7.74 -52.48 -0.41 0.94 16 17 C 0.07 1.79 5.38 -17.82 -0.10 1.69 16 18 N -0.87 -22.38 11.54 55.43 0.64 -21.74 16 19 Si 0.89 18.79 29.54 -169.99 -5.02 13.77 16 20 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 21 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 22 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 23 H 0.17 3.30 4.64 -51.93 -0.24 3.06 16 24 H 0.12 1.65 8.14 -51.93 -0.42 1.23 16 25 H 0.12 1.63 8.14 -51.92 -0.42 1.21 16 26 H 0.14 2.04 7.21 -52.49 -0.38 1.66 16 27 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 28 H 0.13 1.62 8.06 -52.48 -0.42 1.20 16 29 H 0.39 5.63 9.06 45.56 0.41 6.04 16 30 H 0.35 9.14 7.08 -39.29 -0.28 8.86 16 31 H 0.33 7.57 5.91 -39.29 -0.23 7.34 16 32 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 LS Contribution 276.20 15.07 4.16 4.16 Total: -1.00 -30.98 276.20 -6.60 -37.58 By element: Atomic # 1 Polarization: 26.35 SS G_CDS: -2.16 Total: 24.19 kcal Atomic # 6 Polarization: -31.75 SS G_CDS: -1.55 Total: -33.30 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: 0.58 Total: -42.49 kcal Atomic # 8 Polarization: -48.07 SS G_CDS: -2.06 Total: -50.12 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.02 Total: 13.77 kcal Atomic # 16 Polarization: 46.77 SS G_CDS: -0.55 Total: 46.22 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -30.98 -6.60 -37.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260594770.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.983 kcal (2) G-P(sol) polarization free energy of solvation -30.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds