Wall clock time and date at job start Mon Mar 30 2020 04:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 O 1.42101 * 110.54006 * 2 1 4 4 O 1.42094 * 110.54699 * 223.24529 * 2 1 3 5 5 C 1.76208 * 104.45062 * 111.62353 * 2 1 3 6 6 C 1.38283 * 119.97174 * 114.97908 * 5 2 1 7 7 C 1.38246 * 120.10912 * 180.02562 * 6 5 2 8 8 C 1.38163 * 120.05539 * 359.97328 * 7 6 5 9 9 C 1.38708 * 119.94777 * 359.77250 * 8 7 6 10 10 O 1.35904 * 120.06144 * 180.25233 * 9 8 7 11 11 C 1.38124 * 119.97112 * 295.00216 * 5 2 1 12 12 C 1.50703 * 120.02663 * 359.97438 * 11 5 2 13 13 H 1.08996 * 109.47343 * 344.99823 * 12 11 5 14 14 N 1.46905 * 109.47075 * 224.99981 * 12 11 5 15 15 C 1.50697 * 109.47094 * 105.00022 * 12 11 5 16 16 H 1.08003 * 119.99947 * 0.02562 * 15 12 11 17 17 C 1.37881 * 120.00105 * 179.97438 * 15 12 11 18 18 N 1.31513 * 119.99734 * 0.02562 * 17 15 12 19 19 Si 1.86804 * 119.99920 * 180.02562 * 17 15 12 20 20 H 1.48491 * 109.47212 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47100 * 120.00498 * 19 17 15 22 22 H 1.48497 * 109.46797 * 239.99920 * 19 17 15 23 23 H 1.08996 * 109.47223 * 308.37287 * 1 2 3 24 24 H 1.08997 * 109.47535 * 68.37715 * 1 2 3 25 25 H 1.09005 * 109.46811 * 188.37802 * 1 2 3 26 26 H 1.08001 * 119.94759 * 0.04399 * 6 5 2 27 27 H 1.08000 * 119.97248 * 180.02562 * 7 6 5 28 28 H 1.08004 * 120.02657 * 180.02562 * 8 7 6 29 29 H 0.96701 * 113.99616 * 270.25345 * 10 9 8 30 30 H 1.00901 * 110.99869 * 176.04968 * 14 12 11 31 31 H 1.00896 * 110.99543 * 300.00090 * 14 12 11 32 32 H 0.97005 * 119.99709 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3125 1.3307 0.0000 4 8 2.3127 -0.9692 -0.9116 5 6 2.2537 -0.6288 1.5862 6 6 2.9159 -1.8382 1.6906 7 6 3.2618 -2.3345 2.9337 8 6 2.9469 -1.6225 4.0751 9 6 2.2873 -0.4066 3.9728 10 8 1.9810 0.2982 5.0938 11 6 1.9361 0.0866 2.7243 12 6 1.2145 1.4046 2.6098 13 1 1.2628 1.7569 1.5795 14 7 1.8507 2.3898 3.4945 15 6 -0.2266 1.2248 3.0121 16 1 -0.5841 0.2534 3.3204 17 6 -1.0886 2.3007 2.9877 18 7 -0.6532 3.4837 2.6128 19 14 -2.8748 2.0780 3.4872 20 1 -3.1105 0.6611 3.8637 21 1 -3.1778 2.9557 4.6461 22 1 -3.7560 2.4402 2.3482 23 1 -0.3633 0.6379 0.8056 24 1 -0.3634 0.3787 -0.9553 25 1 -0.3633 -1.0168 0.1497 26 1 3.1636 -2.3960 0.7996 27 1 3.7794 -3.2791 3.0127 28 1 3.2177 -2.0104 5.0460 29 1 1.1169 0.0820 5.4703 30 1 1.4258 3.2988 3.3882 31 1 1.8187 2.0859 4.4561 32 1 -1.2597 4.2405 2.5953 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260594770.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:11 Heat of formation + Delta-G solvation = -104.827186 kcal Electronic energy + Delta-G solvation = -19825.148677 eV Core-core repulsion = 16684.529980 eV Total energy + Delta-G solvation = -3140.618697 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.071 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.90565 -38.21038 -37.53094 -36.92548 -36.44693 -33.55381 -31.63679 -30.54889 -30.13386 -27.83661 -24.80413 -24.06788 -22.02463 -20.15730 -19.23989 -18.53561 -17.77073 -17.35429 -17.01375 -16.93422 -16.30994 -16.17356 -15.78534 -15.15575 -14.87811 -14.35080 -14.00535 -13.86031 -13.59089 -13.37052 -13.22138 -13.09230 -12.96782 -12.88702 -12.76598 -12.49302 -12.21991 -12.04955 -11.82798 -11.69478 -10.95527 -10.49886 -10.15465 -9.47405 -9.02174 -8.08052 -6.38653 -0.74581 -0.06087 0.41107 1.39503 1.44910 1.53217 1.98795 2.35239 2.49908 2.94175 3.05299 3.35905 3.47139 3.99197 4.10711 4.14433 4.18836 4.31823 4.53711 4.76406 4.86082 5.04737 5.06001 5.19212 5.30747 5.37409 5.63241 5.71152 5.86320 6.05591 6.65354 6.92310 7.06075 7.27169 7.47593 8.84857 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.017662 B = 0.009961 C = 0.007688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.917382 B = 2810.420401 C = 3641.335249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.646 4.646 2 S 2.501 3.499 3 O -0.977 6.977 4 O -0.971 6.971 5 C -0.663 4.663 6 C -0.046 4.046 7 C -0.135 4.135 8 C -0.095 4.095 9 C 0.077 3.923 10 O -0.491 6.491 11 C 0.007 3.993 12 C 0.203 3.797 13 H 0.051 0.949 14 N -0.852 5.852 15 C -0.557 4.557 16 H 0.065 0.935 17 C 0.030 3.970 18 N -0.908 5.908 19 Si 0.954 3.046 20 H -0.261 1.261 21 H -0.285 1.285 22 H -0.282 1.282 23 H 0.145 0.855 24 H 0.149 0.851 25 H 0.157 0.843 26 H 0.157 0.843 27 H 0.171 0.829 28 H 0.160 0.840 29 H 0.397 0.603 30 H 0.342 0.658 31 H 0.334 0.666 32 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.365 -11.859 0.894 11.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.799 4.799 2 S 2.687 3.313 3 O -0.974 6.974 4 O -0.968 6.968 5 C -0.752 4.752 6 C -0.065 4.065 7 C -0.154 4.154 8 C -0.113 4.113 9 C 0.032 3.968 10 O -0.302 6.302 11 C 0.005 3.995 12 C 0.093 3.907 13 H 0.068 0.932 14 N -0.388 5.388 15 C -0.597 4.597 16 H 0.083 0.917 17 C -0.173 4.173 18 N -0.546 5.546 19 Si 0.780 3.220 20 H -0.185 1.185 21 H -0.211 1.211 22 H -0.208 1.208 23 H 0.164 0.836 24 H 0.167 0.833 25 H 0.175 0.825 26 H 0.175 0.825 27 H 0.189 0.811 28 H 0.178 0.822 29 H 0.255 0.745 30 H 0.156 0.844 31 H 0.151 0.849 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.129 -11.309 -0.269 11.510 hybrid contribution -2.753 0.240 1.450 3.121 sum -0.624 -11.068 1.181 11.148 Atomic orbital electron populations 1.30283 1.21226 1.14396 1.13978 1.04715 0.79481 0.73380 0.73771 1.93553 1.79297 1.38202 1.86383 1.93454 1.79507 1.61925 1.61947 1.30166 1.17271 1.08043 1.19718 1.21215 0.92937 0.92066 1.00313 1.21448 1.01481 1.01660 0.90783 1.21994 0.96059 0.92063 1.01194 1.18530 1.00547 0.91981 0.85745 1.84665 1.41435 1.64328 1.39737 1.20573 0.90753 0.95582 0.92612 1.18595 0.90021 0.85639 0.96491 0.93191 1.59405 1.61086 1.06905 1.11417 1.21904 0.94698 0.95934 1.47120 0.91679 1.25735 1.02431 0.94817 0.94272 1.69918 1.37148 1.00843 1.46670 0.85564 0.80006 0.78634 0.77802 1.18466 1.21139 1.20777 0.83649 0.83269 0.82477 0.82518 0.81119 0.82245 0.74500 0.84396 0.84947 0.92178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -20.19 10.47 113.37 1.19 -19.01 16 2 S 2.50 93.63 5.15 -56.49 -0.29 93.34 16 3 O -0.98 -46.41 15.54 -127.65 -1.98 -48.39 16 4 O -0.97 -36.02 16.73 -127.65 -2.14 -38.16 16 5 C -0.66 -25.11 5.58 22.25 0.12 -24.98 16 6 C -0.05 -1.43 9.50 22.28 0.21 -1.22 16 7 C -0.14 -3.45 10.04 22.25 0.22 -3.23 16 8 C -0.09 -2.67 9.99 22.36 0.22 -2.44 16 9 C 0.08 2.83 6.48 22.51 0.15 2.98 16 10 O -0.49 -17.17 10.21 -92.47 -0.94 -18.11 16 11 C 0.01 0.29 4.88 -19.77 -0.10 0.19 16 12 C 0.20 9.86 1.96 43.42 0.08 9.94 16 13 H 0.05 2.68 4.06 -2.39 -0.01 2.67 16 14 N -0.85 -43.07 9.06 -174.95 -1.59 -44.65 16 15 C -0.56 -26.36 6.42 25.60 0.16 -26.20 16 16 H 0.07 2.92 7.74 -2.91 -0.02 2.90 16 17 C 0.03 1.44 5.38 84.66 0.46 1.90 16 18 N -0.91 -47.89 11.54 21.45 0.25 -47.65 16 19 Si 0.95 38.50 29.54 68.60 2.03 40.53 16 20 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 21 H -0.29 -11.65 7.11 99.48 0.71 -10.94 16 22 H -0.28 -11.38 7.11 99.48 0.71 -10.68 16 23 H 0.15 5.60 4.64 -2.39 -0.01 5.59 16 24 H 0.15 3.79 8.14 -2.39 -0.02 3.77 16 25 H 0.16 3.75 8.14 -2.39 -0.02 3.73 16 26 H 0.16 4.14 7.21 -2.91 -0.02 4.12 16 27 H 0.17 2.81 8.06 -2.91 -0.02 2.79 16 28 H 0.16 3.35 8.06 -2.91 -0.02 3.33 16 29 H 0.40 11.21 9.06 -74.06 -0.67 10.54 16 30 H 0.34 18.41 7.08 -89.69 -0.63 17.78 16 31 H 0.33 15.71 5.91 -89.70 -0.53 15.18 16 32 H 0.27 13.51 8.31 -92.70 -0.77 12.74 16 Total: -1.00 -68.30 276.20 -2.58 -70.88 By element: Atomic # 1 Polarization: 54.91 SS G_CDS: -0.64 Total: 54.27 kcal Atomic # 6 Polarization: -64.79 SS G_CDS: 2.72 Total: -62.07 kcal Atomic # 7 Polarization: -90.96 SS G_CDS: -1.34 Total: -92.30 kcal Atomic # 8 Polarization: -99.60 SS G_CDS: -5.06 Total: -104.66 kcal Atomic # 14 Polarization: 38.50 SS G_CDS: 2.03 Total: 40.53 kcal Atomic # 16 Polarization: 93.63 SS G_CDS: -0.29 Total: 93.34 kcal Total: -68.30 -2.58 -70.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260594770.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.944 kcal (2) G-P(sol) polarization free energy of solvation -68.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds