Wall clock time and date at job start Mon Mar 30 2020 05:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00105 * 2 1 4 4 C 1.38595 * 120.00111 * 180.02562 * 2 1 3 5 5 C 1.39475 * 120.46748 * 4.99559 * 4 2 1 6 6 C 1.40511 * 118.07419 * 179.97438 * 5 4 2 7 7 C 1.41597 * 120.62479 * 180.02562 * 6 5 4 8 8 H 1.08001 * 120.00424 * 359.97438 * 7 6 5 9 9 C 1.40080 * 120.00235 * 179.97438 * 7 6 5 10 10 N 1.30694 * 119.99372 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00188 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.46966 * 59.99971 * 11 9 7 13 13 H 1.48501 * 109.47031 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.47111 * 299.99932 * 11 9 7 15 15 N 1.34235 * 118.75224 * 359.97438 * 6 5 4 16 16 C 1.31356 * 120.78037 * 0.02562 * 15 6 5 17 17 S 1.76201 * 118.92162 * 179.97438 * 16 15 6 18 18 C 1.81399 * 104.44737 * 89.99981 * 17 16 15 19 19 O 1.42103 * 104.27677 * 333.93249 * 17 16 15 20 20 O 1.42097 * 104.28070 * 206.07106 * 17 16 15 21 21 N 1.31998 * 122.15588 * 0.27736 * 16 15 6 22 22 H 1.08996 * 109.46767 * 269.99712 * 1 2 3 23 23 H 1.09004 * 109.47048 * 29.99794 * 1 2 3 24 24 H 1.09001 * 109.47087 * 150.00179 * 1 2 3 25 25 H 1.09002 * 109.46918 * 270.00412 * 3 2 1 26 26 H 1.09002 * 109.47257 * 29.99900 * 3 2 1 27 27 H 1.08999 * 109.47047 * 150.00094 * 3 2 1 28 28 H 1.08000 * 120.96203 * 0.02562 * 5 4 2 29 29 H 0.97008 * 119.99275 * 180.02562 * 10 9 7 30 30 H 1.09001 * 109.47190 * 59.99818 * 18 17 16 31 31 H 1.09004 * 109.47089 * 179.97438 * 18 17 16 32 32 H 1.09004 * 109.47568 * 299.99962 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1580 -1.2003 -0.0005 5 6 1.4745 -2.4115 -0.1058 6 6 2.2271 -3.5980 -0.1017 7 6 1.5886 -4.8575 -0.2063 8 1 0.5133 -4.9127 -0.2897 9 6 2.3517 -6.0322 -0.2015 10 7 3.6531 -5.9655 -0.1010 11 14 1.5095 -7.6938 -0.3401 12 1 0.7551 -7.7613 -1.6174 13 1 2.5316 -8.7707 -0.3119 14 1 0.5723 -7.8702 0.7983 15 7 3.5629 -3.5150 0.0020 16 6 4.1584 -2.3482 0.0986 17 16 5.9145 -2.2964 0.2332 18 6 6.4973 -2.2054 -1.4822 19 8 6.2588 -3.5481 0.8110 20 8 6.1780 -1.0776 0.9146 21 7 3.4840 -1.2135 0.1041 22 1 -0.3633 -0.0001 1.0276 23 1 -0.3633 0.8900 -0.5138 24 1 -0.3633 -0.8900 -0.5138 25 1 2.3791 1.5834 -1.0277 26 1 1.6085 2.0284 0.5138 27 1 3.1499 1.1384 0.5138 28 1 0.3980 -2.4366 -0.1888 29 1 4.1816 -6.7790 -0.0980 30 1 6.0986 -1.3074 -1.9543 31 1 7.5867 -2.1687 -1.4944 32 1 6.1569 -3.0849 -2.0288 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260633199.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:31 Heat of formation + Delta-G solvation = -7.712173 kcal Electronic energy + Delta-G solvation = -19090.511244 eV Core-core repulsion = 15986.396521 eV Total energy + Delta-G solvation = -3104.114723 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.18642 -36.30566 -36.09945 -35.16046 -33.98781 -31.30310 -30.28691 -29.03585 -27.92280 -26.42927 -24.43748 -22.97764 -20.89433 -18.42881 -17.76511 -16.85705 -16.01575 -15.58208 -15.18853 -14.98083 -14.73528 -14.63498 -13.77311 -13.59377 -13.08467 -12.97811 -12.75504 -12.69445 -12.19951 -11.84179 -11.59985 -11.39479 -11.32385 -11.24961 -11.19138 -11.07081 -10.68749 -10.38741 -10.31950 -10.02916 -9.46052 -8.95785 -8.46789 -7.76095 -7.01104 -6.61463 -4.86604 0.76848 2.16912 2.84993 3.00801 3.02769 3.18133 3.51391 3.69001 3.82441 4.36455 4.71590 4.80799 5.18279 5.32736 5.51215 5.60457 5.61656 5.71201 5.96601 6.03203 6.06416 6.19120 6.28078 6.43471 6.59150 6.88001 7.00589 7.14580 7.57114 7.91086 8.15750 8.37985 8.61448 8.89674 9.67283 10.10558 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.014531 B = 0.009153 C = 0.005881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.421345 B = 3058.428217 C = 4759.930439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.626 5.626 3 C 0.105 3.895 4 C 0.415 3.585 5 C -0.355 4.355 6 C 0.271 3.729 7 C -0.410 4.410 8 H 0.090 0.910 9 C 0.063 3.937 10 N -0.694 5.694 11 Si 0.914 3.086 12 H -0.264 1.264 13 H -0.274 1.274 14 H -0.263 1.263 15 N -0.448 5.448 16 C -0.178 4.178 17 S 2.530 3.470 18 C -0.647 4.647 19 O -0.913 6.913 20 O -0.938 6.938 21 N -0.596 5.596 22 H 0.041 0.959 23 H 0.059 0.941 24 H 0.070 0.930 25 H 0.035 0.965 26 H 0.050 0.950 27 H 0.081 0.919 28 H 0.111 0.889 29 H 0.284 0.716 30 H 0.126 0.874 31 H 0.124 0.876 32 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.317 5.363 -3.730 6.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.344 5.344 3 C -0.039 4.039 4 C 0.180 3.820 5 C -0.386 4.386 6 C 0.144 3.856 7 C -0.443 4.443 8 H 0.108 0.892 9 C -0.166 4.166 10 N -0.314 5.314 11 Si 0.737 3.263 12 H -0.188 1.188 13 H -0.198 1.198 14 H -0.188 1.188 15 N -0.172 5.172 16 C -0.536 4.536 17 S 2.704 3.296 18 C -0.797 4.797 19 O -0.910 6.910 20 O -0.934 6.934 21 N -0.330 5.330 22 H 0.059 0.941 23 H 0.077 0.923 24 H 0.088 0.912 25 H 0.054 0.946 26 H 0.069 0.931 27 H 0.099 0.901 28 H 0.129 0.871 29 H 0.095 0.905 30 H 0.145 0.855 31 H 0.143 0.857 32 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.192 5.335 -2.887 6.182 hybrid contribution -2.121 -0.649 -0.843 2.372 sum -0.929 4.686 -3.729 6.060 Atomic orbital electron populations 1.21487 0.79673 1.02082 1.00584 1.45807 1.04286 1.03026 1.81301 1.21411 0.97896 0.84361 1.00204 1.18188 0.88902 0.85097 0.89815 1.21824 0.99753 0.92398 1.24625 1.18615 0.87362 0.92266 0.87381 1.19638 0.94807 0.88820 1.40986 0.89229 1.26196 0.94967 1.01602 0.93800 1.70042 1.05510 1.30802 1.25070 0.86278 0.79889 0.80136 0.79994 1.18807 1.19842 1.18751 1.69397 1.11416 1.21698 1.14720 1.35159 1.22887 0.89945 1.05593 1.04662 0.73512 0.74289 0.77142 1.30155 1.11609 1.11945 1.26033 1.93600 1.81406 1.42606 1.73339 1.93525 1.83537 1.46579 1.69770 1.67632 1.06986 1.29281 1.29113 0.94079 0.92263 0.91182 0.94623 0.93087 0.90078 0.87064 0.90481 0.85516 0.85704 0.84878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.57 10.31 59.85 0.62 2.19 16 2 N -0.63 -11.94 3.38 -189.51 -0.64 -12.58 16 3 C 0.10 1.69 10.51 59.85 0.63 2.32 16 4 C 0.42 9.77 7.39 -154.76 -1.14 8.63 16 5 C -0.35 -8.69 9.10 -38.26 -0.35 -9.04 16 6 C 0.27 7.31 6.58 -84.68 -0.56 6.75 16 7 C -0.41 -10.53 9.19 -37.61 -0.35 -10.88 16 8 H 0.09 2.11 7.85 -52.49 -0.41 1.70 16 9 C 0.06 1.54 5.50 -17.35 -0.10 1.45 16 10 N -0.69 -17.98 11.52 55.55 0.64 -17.34 16 11 Si 0.91 17.77 29.56 -169.99 -5.02 12.75 16 12 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 13 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 14 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 15 N -0.45 -12.20 7.67 -11.77 -0.09 -12.29 16 16 C -0.18 -4.40 7.37 -92.35 -0.68 -5.08 16 17 S 2.53 51.26 5.92 -107.50 -0.64 50.62 16 18 C -0.65 -9.37 10.80 101.05 1.09 -8.27 16 19 O -0.91 -21.29 17.70 -57.54 -1.02 -22.31 16 20 O -0.94 -20.38 17.70 -57.54 -1.02 -21.40 16 21 N -0.60 -14.55 8.84 -13.06 -0.12 -14.67 16 22 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.06 0.70 8.07 -51.93 -0.42 0.28 16 24 H 0.07 1.06 6.04 -51.93 -0.31 0.75 16 25 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.66 8.07 -51.93 -0.42 0.24 16 27 H 0.08 1.47 7.33 -51.93 -0.38 1.09 16 28 H 0.11 2.45 6.16 -52.49 -0.32 2.13 16 29 H 0.28 6.66 8.29 -40.82 -0.34 6.33 16 30 H 0.13 1.66 8.14 -51.92 -0.42 1.24 16 31 H 0.12 1.37 8.14 -51.92 -0.42 0.95 16 32 H 0.13 1.92 8.14 -51.92 -0.42 1.50 16 LS Contribution 292.88 15.07 4.41 4.41 Total: -1.00 -34.50 292.88 -7.84 -42.34 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -3.52 Total: 2.39 kcal Atomic # 6 Polarization: -11.10 SS G_CDS: -0.83 Total: -11.93 kcal Atomic # 7 Polarization: -56.67 SS G_CDS: -0.21 Total: -56.87 kcal Atomic # 8 Polarization: -41.67 SS G_CDS: -2.04 Total: -43.71 kcal Atomic # 14 Polarization: 17.77 SS G_CDS: -5.02 Total: 12.75 kcal Atomic # 16 Polarization: 51.26 SS G_CDS: -0.64 Total: 50.62 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -34.50 -7.84 -42.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260633199.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.627 kcal (2) G-P(sol) polarization free energy of solvation -34.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds